Wall clock time and date at job start Mon Mar 30 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47263 * 2 1 4 4 C 1.42907 * 114.00063 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47395 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99712 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00233 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.63278 * 180.02562 * 7 5 4 9 9 C 1.53198 * 108.89199 * 233.68322 * 8 7 5 10 10 C 1.53043 * 109.31074 * 305.28844 * 9 8 7 11 11 N 1.46492 * 109.45765 * 181.38664 * 10 9 8 12 12 C 1.46500 * 120.00245 * 300.00026 * 11 10 9 13 13 C 1.36943 * 119.99879 * 120.00398 * 11 10 9 14 14 H 1.07999 * 119.99967 * 22.99172 * 13 11 10 15 15 C 1.38811 * 119.99906 * 202.99440 * 13 11 10 16 16 N 1.31621 * 120.00144 * 11.62787 * 15 13 11 17 17 Si 1.86796 * 119.99925 * 191.63607 * 15 13 11 18 18 H 1.48503 * 109.47348 * 89.99931 * 17 15 13 19 19 H 1.48502 * 109.47400 * 209.99625 * 17 15 13 20 20 H 1.48502 * 109.47393 * 329.99826 * 17 15 13 21 21 C 1.53047 * 109.53494 * 61.36702 * 10 9 8 22 22 C 1.47206 * 120.81359 * 0.14599 * 7 5 4 23 23 H 1.09000 * 109.46982 * 300.00461 * 1 2 3 24 24 H 1.09000 * 109.47118 * 59.99454 * 1 2 3 25 25 H 1.08996 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46991 * 240.00197 * 2 1 3 27 27 H 1.09000 * 109.47118 * 120.00546 * 2 1 3 28 28 H 1.09002 * 109.46819 * 59.99941 * 4 3 2 29 29 H 1.08999 * 109.47012 * 300.00133 * 4 3 2 30 30 H 1.08995 * 109.59179 * 113.82338 * 8 7 5 31 31 H 1.09000 * 109.58418 * 353.53506 * 8 7 5 32 32 H 1.08996 * 109.49715 * 65.24024 * 9 8 7 33 33 H 1.09001 * 109.49374 * 185.30588 * 9 8 7 34 34 H 1.08995 * 109.46080 * 301.35036 * 10 9 8 35 35 H 1.09005 * 109.46932 * 93.85217 * 12 11 10 36 36 H 1.09005 * 109.47429 * 213.85234 * 12 11 10 37 37 H 1.09002 * 109.47075 * 333.85226 * 12 11 10 38 38 H 0.97001 * 119.99971 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.49598 * 58.58809 * 21 10 9 40 40 H 1.09001 * 109.49599 * 178.68161 * 21 10 9 41 41 H 1.08996 * 109.53157 * 6.53222 * 22 7 5 42 42 H 1.09004 * 109.67457 * 246.22922 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8196 2.9160 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1211 3.2661 0.0002 8 6 5.5156 4.6814 0.0015 9 6 6.4755 4.9298 -1.1663 10 6 7.6499 3.9529 -1.0727 11 7 8.5868 4.2096 -2.1692 12 6 8.1381 4.0917 -3.5588 13 6 9.8821 4.5596 -1.8953 14 1 10.3227 4.2979 -0.9446 15 6 10.6287 5.2509 -2.8395 16 7 10.0374 5.7693 -3.8951 17 14 12.4726 5.4452 -2.6123 18 1 13.1736 4.3054 -3.2563 19 1 12.9172 6.7167 -3.2376 20 1 12.7930 5.4680 -1.1625 21 6 7.1301 2.5168 -1.1717 22 6 6.1776 2.2412 -0.0035 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.8333 0.9766 -0.8908 29 1 3.8341 0.9764 0.8891 30 1 6.0134 4.9213 0.9410 31 1 4.6307 5.3075 -0.1135 32 1 5.9494 4.7769 -2.1086 33 1 6.8482 5.9531 -1.1196 34 1 8.1606 4.0893 -0.1195 35 1 7.8219 5.0694 -3.9227 36 1 8.9577 3.7222 -4.1752 37 1 7.3008 3.3958 -3.6125 38 1 10.5591 6.2527 -4.5547 39 1 6.5979 2.3867 -2.1140 40 1 7.9693 1.8225 -1.1284 41 1 5.7285 1.2553 -0.1230 42 1 6.7298 2.2798 0.9356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330999293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:14 Heat of formation + Delta-G solvation = -57.656190 kcal Electronic energy + Delta-G solvation = -21436.985634 eV Core-core repulsion = 18225.044405 eV Total energy + Delta-G solvation = -3211.941229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.09049 -38.14942 -37.17158 -35.04766 -32.34117 -31.75590 -30.87041 -29.81199 -27.61995 -26.00695 -24.67415 -23.07711 -22.77510 -22.04757 -19.94738 -18.52316 -17.37286 -16.76695 -16.62625 -16.53501 -15.62317 -15.03105 -14.98665 -14.18047 -13.95631 -13.73939 -13.57108 -13.34535 -12.87085 -12.78167 -12.66431 -12.35421 -12.23365 -11.73191 -11.63363 -11.45515 -11.44849 -10.95088 -10.86616 -10.80809 -10.39382 -10.24211 -10.13957 -9.90272 -9.86505 -9.67497 -9.52980 -8.57853 -8.46641 -6.76020 -5.72787 -3.19592 2.66529 2.75497 3.36845 3.43049 3.44627 3.73185 4.46402 4.52292 4.77104 4.84369 4.97206 5.01808 5.07362 5.09494 5.22463 5.36056 5.39524 5.39925 5.49591 5.59382 5.65279 5.76921 5.87489 5.88088 6.00736 6.14689 6.24095 6.34980 6.52044 6.58257 6.78134 6.88351 6.97589 7.00864 7.39038 7.50175 7.73528 7.80158 8.26487 8.39620 9.23287 9.86653 10.36152 11.31942 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043691 B = 0.003560 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.711436 B = 7863.923397 C = 7961.191950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.046 3.954 5 C 0.515 3.485 6 O -0.529 6.529 7 N -0.606 5.606 8 C 0.115 3.885 9 C -0.145 4.145 10 C 0.179 3.821 11 N -0.596 5.596 12 C 0.164 3.836 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.001 3.999 16 N -0.907 5.907 17 Si 0.905 3.095 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.280 1.280 21 C -0.149 4.149 22 C 0.109 3.891 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.042 0.958 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 -12.081 8.119 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.034 4.034 5 C 0.302 3.698 6 O -0.405 6.405 7 N -0.341 5.341 8 C -0.007 4.007 9 C -0.185 4.185 10 C 0.071 3.929 11 N -0.318 5.318 12 C 0.020 3.980 13 C -0.385 4.385 14 H 0.086 0.914 15 C -0.197 4.197 16 N -0.552 5.552 17 Si 0.735 3.265 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.189 4.189 22 C -0.014 4.014 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.579 -11.353 7.956 18.719 hybrid contribution 1.354 -0.134 -0.095 1.364 sum -11.225 -11.488 7.860 17.881 Atomic orbital electron populations 1.21726 0.93466 1.02144 1.03463 1.22540 0.95942 0.83523 1.00165 1.88020 1.18757 1.26209 1.95412 1.22242 0.83586 0.95167 1.02364 1.20134 0.82398 0.90388 0.76916 1.90701 1.48948 1.51763 1.49038 1.48180 1.04815 1.08201 1.72936 1.21700 0.99333 0.80460 0.99250 1.22509 0.96923 1.01930 0.97130 1.20276 0.89442 0.90400 0.92800 1.43957 1.07391 1.80112 1.00322 1.20738 0.95256 0.97078 0.84942 1.19227 0.87283 1.29865 1.02114 0.91420 1.25042 0.98491 0.97896 0.98257 1.70071 1.33946 1.38406 1.12797 0.86250 0.85528 0.77125 0.77576 1.21566 1.21780 1.20527 1.22499 0.98338 1.00914 0.97133 1.21889 0.89219 0.90221 1.00098 0.91734 0.91667 0.91035 0.93172 0.93265 0.90248 0.90449 0.91632 0.89610 0.92220 0.90524 0.91863 0.95471 0.93927 0.98495 0.93763 0.91882 0.90649 0.90760 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.37 -4.84 9.88 -55.14 -0.54 -5.38 16 4 C 0.05 0.53 4.77 36.00 0.17 0.70 16 5 C 0.51 7.91 7.78 -10.99 -0.09 7.83 16 6 O -0.53 -10.32 15.91 -14.36 -0.23 -10.55 16 7 N -0.61 -8.69 2.98 -172.52 -0.51 -9.20 16 8 C 0.11 1.78 6.42 -3.71 -0.02 1.76 16 9 C -0.14 -2.62 5.34 -26.61 -0.14 -2.76 16 10 C 0.18 3.43 2.55 -67.89 -0.17 3.25 16 11 N -0.60 -14.38 2.81 -173.43 -0.49 -14.87 16 12 C 0.16 3.99 8.03 59.85 0.48 4.47 16 13 C -0.26 -6.81 9.59 -15.06 -0.14 -6.96 16 14 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 15 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 16 N -0.91 -26.24 10.64 55.49 0.59 -25.65 16 17 Si 0.90 21.55 29.57 -169.99 -5.03 16.52 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.15 -2.29 5.32 -26.59 -0.14 -2.43 16 22 C 0.11 1.30 6.35 -3.54 -0.02 1.28 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 29 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 32 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 35 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 36 H 0.04 1.12 7.22 -51.93 -0.37 0.74 16 37 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.68 5.97 -51.93 -0.31 0.37 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -32.60 332.77 -7.83 -40.43 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.09 Total: -3.34 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 0.46 Total: 7.03 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.41 Total: -49.73 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.77 Total: -15.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.60 -7.83 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330999293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.228 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds