Wall clock time and date at job start Mon Mar 30 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47263 * 2 1 4 4 C 1.42907 * 114.00063 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47395 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99712 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00233 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.63278 * 180.02562 * 7 5 4 9 9 C 1.53198 * 108.89199 * 233.68322 * 8 7 5 10 10 C 1.53043 * 109.31074 * 305.28844 * 9 8 7 11 11 N 1.46492 * 109.45765 * 181.38664 * 10 9 8 12 12 C 1.46500 * 120.00245 * 300.00026 * 11 10 9 13 13 C 1.36943 * 119.99879 * 120.00398 * 11 10 9 14 14 H 1.07999 * 119.99967 * 22.99172 * 13 11 10 15 15 C 1.38811 * 119.99906 * 202.99440 * 13 11 10 16 16 N 1.31621 * 120.00144 * 11.62787 * 15 13 11 17 17 Si 1.86796 * 119.99925 * 191.63607 * 15 13 11 18 18 H 1.48503 * 109.47348 * 89.99931 * 17 15 13 19 19 H 1.48502 * 109.47400 * 209.99625 * 17 15 13 20 20 H 1.48502 * 109.47393 * 329.99826 * 17 15 13 21 21 C 1.53047 * 109.53494 * 61.36702 * 10 9 8 22 22 C 1.47206 * 120.81359 * 0.14599 * 7 5 4 23 23 H 1.09000 * 109.46982 * 300.00461 * 1 2 3 24 24 H 1.09000 * 109.47118 * 59.99454 * 1 2 3 25 25 H 1.08996 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46991 * 240.00197 * 2 1 3 27 27 H 1.09000 * 109.47118 * 120.00546 * 2 1 3 28 28 H 1.09002 * 109.46819 * 59.99941 * 4 3 2 29 29 H 1.08999 * 109.47012 * 300.00133 * 4 3 2 30 30 H 1.08995 * 109.59179 * 113.82338 * 8 7 5 31 31 H 1.09000 * 109.58418 * 353.53506 * 8 7 5 32 32 H 1.08996 * 109.49715 * 65.24024 * 9 8 7 33 33 H 1.09001 * 109.49374 * 185.30588 * 9 8 7 34 34 H 1.08995 * 109.46080 * 301.35036 * 10 9 8 35 35 H 1.09005 * 109.46932 * 93.85217 * 12 11 10 36 36 H 1.09005 * 109.47429 * 213.85234 * 12 11 10 37 37 H 1.09002 * 109.47075 * 333.85226 * 12 11 10 38 38 H 0.97001 * 119.99971 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.49598 * 58.58809 * 21 10 9 40 40 H 1.09001 * 109.49599 * 178.68161 * 21 10 9 41 41 H 1.08996 * 109.53157 * 6.53222 * 22 7 5 42 42 H 1.09004 * 109.67457 * 246.22922 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8196 2.9160 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1211 3.2661 0.0002 8 6 5.5156 4.6814 0.0015 9 6 6.4755 4.9298 -1.1663 10 6 7.6499 3.9529 -1.0727 11 7 8.5868 4.2096 -2.1692 12 6 8.1381 4.0917 -3.5588 13 6 9.8821 4.5596 -1.8953 14 1 10.3227 4.2979 -0.9446 15 6 10.6287 5.2509 -2.8395 16 7 10.0374 5.7693 -3.8951 17 14 12.4726 5.4452 -2.6123 18 1 13.1736 4.3054 -3.2563 19 1 12.9172 6.7167 -3.2376 20 1 12.7930 5.4680 -1.1625 21 6 7.1301 2.5168 -1.1717 22 6 6.1776 2.2412 -0.0035 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.8333 0.9766 -0.8908 29 1 3.8341 0.9764 0.8891 30 1 6.0134 4.9213 0.9410 31 1 4.6307 5.3075 -0.1135 32 1 5.9494 4.7769 -2.1086 33 1 6.8482 5.9531 -1.1196 34 1 8.1606 4.0893 -0.1195 35 1 7.8219 5.0694 -3.9227 36 1 8.9577 3.7222 -4.1752 37 1 7.3008 3.3958 -3.6125 38 1 10.5591 6.2527 -4.5547 39 1 6.5979 2.3867 -2.1140 40 1 7.9693 1.8225 -1.1284 41 1 5.7285 1.2553 -0.1230 42 1 6.7298 2.2798 0.9356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330999293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:14 Heat of formation + Delta-G solvation = -78.296214 kcal Electronic energy + Delta-G solvation = -21437.880653 eV Core-core repulsion = 18225.044405 eV Total energy + Delta-G solvation = -3212.836248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26540 -39.25969 -38.37801 -36.67959 -33.99043 -32.70144 -31.96957 -31.47255 -28.65748 -28.02637 -26.15268 -24.10844 -23.72206 -23.60518 -21.32619 -19.82456 -18.75974 -18.38429 -17.58211 -17.39056 -17.01937 -16.62662 -16.01874 -15.72154 -15.26910 -15.10526 -14.90317 -14.71855 -14.13970 -14.10616 -13.67547 -13.59368 -13.26864 -13.17871 -13.05123 -12.77159 -12.65370 -12.34644 -12.30481 -12.19407 -12.13792 -12.04803 -11.81588 -11.60416 -11.22963 -10.78311 -10.64113 -10.59580 -9.69648 -8.75335 -7.79997 -5.28639 1.48363 1.48820 1.53518 1.57749 1.74183 2.52280 2.88643 3.33546 3.53072 3.64710 3.88726 4.10751 4.15457 4.18317 4.19748 4.30048 4.33548 4.37620 4.40094 4.53534 4.57745 4.71429 4.80014 4.83563 4.86228 4.92785 5.00305 5.05336 5.10845 5.25860 5.28579 5.36087 5.50835 5.60180 5.67987 5.73096 6.13152 6.35601 6.42051 7.12749 7.17608 7.90639 8.35334 9.23364 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043691 B = 0.003560 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.711436 B = 7863.923397 C = 7961.191950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.050 3.950 5 C 0.508 3.492 6 O -0.581 6.581 7 N -0.605 5.605 8 C 0.124 3.876 9 C -0.132 4.132 10 C 0.172 3.828 11 N -0.612 5.612 12 C 0.184 3.816 13 C -0.257 4.257 14 H 0.077 0.923 15 C -0.058 4.058 16 N -0.943 5.943 17 Si 0.969 3.031 18 H -0.287 1.287 19 H -0.300 1.300 20 H -0.266 1.266 21 C -0.138 4.138 22 C 0.113 3.887 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.066 0.934 35 H -0.006 1.006 36 H 0.015 0.985 37 H 0.026 0.974 38 H 0.245 0.755 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 -14.878 10.026 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.324 6.324 4 C -0.029 4.029 5 C 0.297 3.703 6 O -0.461 6.461 7 N -0.339 5.339 8 C 0.001 3.999 9 C -0.173 4.173 10 C 0.065 3.935 11 N -0.334 5.334 12 C 0.038 3.962 13 C -0.388 4.388 14 H 0.094 0.906 15 C -0.253 4.253 16 N -0.590 5.590 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.227 1.227 20 H -0.190 1.190 21 C -0.178 4.178 22 C -0.008 4.008 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.012 0.988 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.134 0.866 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.461 -14.200 9.905 21.332 hybrid contribution 1.259 0.719 -0.661 1.594 sum -11.202 -13.481 9.244 19.816 Atomic orbital electron populations 1.21782 0.93353 1.03479 1.02336 1.22795 0.96167 0.81947 1.01856 1.87984 1.19714 1.28890 1.95782 1.22346 0.83388 0.92102 1.05097 1.20975 0.81884 0.91970 0.75498 1.90678 1.50368 1.53613 1.51428 1.48266 1.05427 1.07924 1.72278 1.21477 0.98025 0.81794 0.98644 1.22300 0.97051 1.00413 0.97503 1.20552 0.88750 0.92960 0.91188 1.44210 1.07773 1.80130 1.01259 1.20393 0.94947 0.95756 0.85068 1.19627 0.88548 1.28539 1.02055 0.90568 1.25829 1.02602 0.98422 0.98402 1.70255 1.35149 1.39840 1.13764 0.85230 0.80624 0.76363 0.78003 1.21369 1.22742 1.19010 1.22321 0.99206 0.97806 0.98436 1.22072 0.88152 0.91226 0.99387 0.92667 0.93015 0.88449 0.91706 0.91155 0.87857 0.86817 0.89695 0.91050 0.94187 0.92991 0.91582 0.98810 0.96613 0.95596 0.94530 0.92890 0.89960 0.86615 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.40 -9.78 9.88 -129.94 -1.28 -11.06 16 4 C 0.05 0.96 4.77 71.24 0.34 1.30 16 5 C 0.51 14.56 7.78 87.66 0.68 15.24 16 6 O -0.58 -22.64 15.91 15.98 0.25 -22.38 16 7 N -0.60 -15.78 2.98 -818.13 -2.44 -18.22 16 8 C 0.12 3.72 6.42 86.36 0.55 4.28 16 9 C -0.13 -4.82 5.34 30.67 0.16 -4.66 16 10 C 0.17 6.37 2.55 45.02 0.11 6.49 16 11 N -0.61 -29.52 2.81 -702.62 -1.97 -31.49 16 12 C 0.18 9.11 8.03 127.77 1.03 10.13 16 13 C -0.26 -13.69 9.59 84.03 0.81 -12.88 16 14 H 0.08 3.85 7.82 -2.91 -0.02 3.83 16 15 C -0.06 -3.22 5.12 84.86 0.43 -2.79 16 16 N -0.94 -56.21 10.64 21.65 0.23 -55.98 16 17 Si 0.97 44.58 29.57 68.60 2.03 46.61 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 C -0.14 -3.84 5.32 30.69 0.16 -3.68 16 22 C 0.11 2.20 6.35 86.32 0.55 2.75 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 1.50 7.70 -2.39 -0.02 1.48 16 29 H 0.11 1.36 7.95 -2.39 -0.02 1.35 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.38 7.00 -2.39 -0.02 2.37 16 32 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16 35 H -0.01 -0.36 7.42 -2.38 -0.02 -0.38 16 36 H 0.02 0.83 7.22 -2.38 -0.02 0.81 16 37 H 0.03 1.10 6.46 -2.39 -0.02 1.09 16 38 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.05 1.59 6.72 -2.39 -0.02 1.58 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.12 1.39 5.97 -2.39 -0.01 1.37 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -73.94 332.77 3.85 -70.09 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.98 Total: 6.45 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 6.05 Total: 15.99 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.19 Total: -105.69 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.03 Total: -33.45 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -73.94 3.85 -70.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330999293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.204 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds