Wall clock time and date at job start Mon Mar 30 2020 01:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 120.00682 * 2 1 4 4 C 1.50706 * 119.99620 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.46788 * 274.99688 * 4 2 1 6 6 O 1.42901 * 109.47029 * 34.99576 * 4 2 1 7 7 C 1.53004 * 109.47146 * 154.99553 * 4 2 1 8 8 N 1.46903 * 109.46944 * 173.85516 * 7 4 2 9 9 C 1.46951 * 110.99751 * 199.01300 * 8 7 4 10 10 C 1.53055 * 109.36358 * 176.81640 * 9 8 7 11 11 N 1.46954 * 109.36526 * 58.40101 * 10 9 8 12 12 C 1.46899 * 111.00007 * 176.81259 * 11 10 9 13 13 C 1.50706 * 109.47077 * 59.36570 * 12 11 10 14 14 H 1.07995 * 119.99620 * 0.93224 * 13 12 11 15 15 C 1.37872 * 119.99799 * 180.92340 * 13 12 11 16 16 N 1.31510 * 120.00400 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99887 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46790 * 60.00665 * 17 15 13 19 19 H 1.48496 * 109.47439 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47181 * 300.00824 * 17 15 13 21 21 C 1.46960 * 110.87732 * 300.68137 * 11 10 9 22 22 C 1.46958 * 110.99556 * 75.21360 * 8 7 4 23 23 H 1.08989 * 109.47403 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46525 * 299.99894 * 1 2 3 25 25 H 1.08999 * 109.47272 * 59.99251 * 1 2 3 26 26 H 1.09000 * 109.47455 * 294.89425 * 5 4 2 27 27 H 1.08992 * 109.47385 * 54.89818 * 5 4 2 28 28 H 1.09002 * 109.46924 * 174.89713 * 5 4 2 29 29 H 0.96698 * 114.00190 * 60.00521 * 6 4 2 30 30 H 1.08991 * 109.47193 * 293.86193 * 7 4 2 31 31 H 1.09005 * 109.46498 * 53.85810 * 7 4 2 32 32 H 1.09001 * 109.49036 * 296.77990 * 9 8 7 33 33 H 1.09000 * 109.49407 * 56.84362 * 9 8 7 34 34 H 1.08997 * 109.48642 * 298.43426 * 10 9 8 35 35 H 1.08995 * 109.48708 * 178.37032 * 10 9 8 36 36 H 1.08997 * 109.46919 * 179.36512 * 12 11 10 37 37 H 1.08995 * 109.47041 * 299.36807 * 12 11 10 38 38 H 0.97001 * 120.00691 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.49019 * 299.34870 * 21 11 10 40 40 H 1.09000 * 109.48448 * 179.28859 * 21 11 10 41 41 H 1.08995 * 109.49000 * 303.15440 * 22 8 7 42 42 H 1.09007 * 109.48831 * 63.22061 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3052 -0.0006 5 6 2.4066 -1.8103 1.4362 6 8 1.5427 -2.2692 -0.7737 7 6 3.6477 -1.0930 -0.6102 8 7 4.4346 -2.3264 -0.4775 9 6 5.8710 -2.0527 -0.6235 10 6 6.6592 -3.3456 -0.4004 11 7 6.2179 -4.3586 -1.3691 12 6 7.0049 -5.5919 -1.2365 13 6 6.8495 -6.1394 0.1590 14 1 6.2164 -5.6310 0.8710 15 6 7.5156 -7.2892 0.5265 16 7 8.2869 -7.9081 -0.3405 17 14 7.3236 -7.9674 2.2564 18 1 5.8948 -8.2846 2.5079 19 1 8.1372 -9.2016 2.3975 20 1 7.7863 -6.9549 3.2392 21 6 4.7814 -4.6322 -1.2231 22 6 3.9933 -3.3394 -1.4463 23 1 -0.3633 -1.0275 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.0307 -1.1191 2.0027 27 1 1.4226 -1.8751 1.9004 28 1 2.8706 -2.7965 1.4292 29 1 1.4126 -2.0145 -1.6974 30 1 3.5459 -0.8386 -1.6651 31 1 4.1537 -0.2811 -0.0879 32 1 6.0691 -1.6746 -1.6264 33 1 6.1763 -1.3090 0.1126 34 1 6.4824 -3.7091 0.6119 35 1 7.7230 -3.1511 -0.5367 36 1 6.6502 -6.3285 -1.9574 37 1 8.0559 -5.3744 -1.4265 38 1 8.7558 -8.7169 -0.0819 39 1 4.5833 -5.0104 -0.2202 40 1 4.4763 -5.3759 -1.9593 41 1 2.9295 -3.5339 -1.3100 42 1 4.1700 -2.9759 -2.4586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331143422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:39 Heat of formation + Delta-G solvation = -71.522074 kcal Electronic energy + Delta-G solvation = -21972.279390 eV Core-core repulsion = 18759.736891 eV Total energy + Delta-G solvation = -3212.542499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46205 -38.64557 -37.11187 -34.79351 -32.47316 -31.59876 -30.28773 -30.14302 -28.07960 -26.07323 -24.45642 -22.87737 -22.51706 -21.33385 -19.81774 -19.02754 -17.44360 -16.38912 -16.04575 -15.82723 -15.41286 -14.99590 -14.68786 -14.44964 -14.12420 -13.86438 -13.80690 -13.13459 -12.92446 -12.58869 -12.50505 -12.42118 -12.33526 -12.11629 -11.78564 -11.70378 -11.44092 -11.08410 -10.97896 -10.79393 -10.56198 -10.45015 -10.28199 -9.99657 -9.83109 -9.57879 -9.22425 -8.39593 -8.04119 -7.12060 -5.99092 -4.08021 1.55798 3.31587 3.36147 3.39097 3.51305 3.93584 4.30952 4.43915 4.59602 4.82744 4.84085 5.08710 5.13731 5.19526 5.31066 5.42386 5.49963 5.61093 5.62988 5.70213 5.74308 5.79607 5.95890 6.00020 6.05726 6.24956 6.30179 6.41623 6.68403 6.83302 6.90774 7.01284 7.25450 7.33149 7.38561 7.44749 7.55562 7.93721 8.10322 8.33394 8.34213 9.02607 9.58723 11.05942 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.004383 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.447683 B = 6386.245303 C = 6710.246660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.335 3.665 3 O -0.451 6.451 4 C 0.098 3.902 5 C -0.123 4.123 6 O -0.534 6.534 7 C 0.038 3.962 8 N -0.526 5.526 9 C 0.058 3.942 10 C 0.066 3.934 11 N -0.545 5.545 12 C 0.187 3.813 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.065 3.935 22 C 0.045 3.955 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.375 0.625 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.262 0.738 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.484 14.059 -0.483 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.209 3.791 3 O -0.324 6.324 4 C 0.055 3.945 5 C -0.180 4.180 6 O -0.340 6.340 7 C -0.091 4.091 8 N -0.250 5.250 9 C -0.070 4.070 10 C -0.063 4.063 11 N -0.269 5.269 12 C 0.062 3.938 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.063 4.063 22 C -0.083 4.083 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.222 0.778 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.016 14.129 0.051 19.902 hybrid contribution -0.008 -0.229 0.417 0.475 sum -14.024 13.900 0.467 19.751 Atomic orbital electron populations 1.22219 0.93998 1.05549 1.04472 1.25638 0.92779 0.90671 0.70048 1.90410 1.72103 1.35042 1.34852 1.21844 0.90410 0.86847 0.95360 1.21542 1.01870 1.04382 0.90218 1.86651 1.77092 1.44870 1.25390 1.22540 0.93864 0.93825 0.98910 1.62050 1.03383 1.07971 1.51627 1.22274 0.87127 0.98352 0.99270 1.21898 0.97566 0.90566 0.96246 1.62691 1.03182 1.12428 1.48642 1.19716 0.93168 0.85336 0.95599 1.21737 1.28459 1.09743 0.98686 0.92337 1.24958 0.95017 0.96708 0.97104 1.69934 1.29819 1.18863 1.34563 0.86706 0.78149 0.78355 0.85106 1.20245 1.21283 1.20278 1.21913 0.89027 0.94557 1.00851 1.22649 1.00890 0.92493 0.92240 0.88860 0.89046 0.89132 0.91166 0.92440 0.88703 0.77791 0.94646 0.89461 0.94948 0.91431 0.93281 0.91486 0.95318 0.95188 0.92816 0.93529 0.91633 0.88425 0.95547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.38 10.12 36.01 0.36 -1.01 16 2 C 0.33 3.31 6.19 -29.03 -0.18 3.13 16 3 O -0.45 -5.89 16.70 6.00 0.10 -5.79 16 4 C 0.10 1.03 1.03 -91.77 -0.09 0.94 16 5 C -0.12 -1.38 8.50 37.16 0.32 -1.06 16 6 O -0.53 -5.14 9.00 -35.23 -0.32 -5.46 16 7 C 0.04 0.47 3.98 -3.82 -0.02 0.45 16 8 N -0.53 -7.92 3.72 -234.46 -0.87 -8.79 16 9 C 0.06 0.93 5.57 -3.77 -0.02 0.91 16 10 C 0.07 1.32 5.24 -3.77 -0.02 1.30 16 11 N -0.55 -11.87 4.92 -235.91 -1.16 -13.03 16 12 C 0.19 4.88 5.14 -4.97 -0.03 4.86 16 13 C -0.55 -15.13 7.67 -34.44 -0.26 -15.39 16 14 H 0.06 1.62 5.80 -52.49 -0.30 1.31 16 15 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.07 1.29 5.31 -3.77 -0.02 1.27 16 22 C 0.04 0.70 5.30 -3.77 -0.02 0.68 16 23 H 0.09 0.56 7.27 -51.94 -0.38 0.18 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 1.28 7.63 -51.93 -0.40 0.89 16 29 H 0.37 2.40 9.04 45.56 0.41 2.81 16 30 H 0.04 0.43 8.00 -51.93 -0.42 0.01 16 31 H 0.09 1.14 7.35 -51.93 -0.38 0.76 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 34 H 0.05 1.08 6.56 -51.93 -0.34 0.74 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.03 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.05 1.02 6.83 -51.93 -0.35 0.67 16 40 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 41 H 0.10 1.38 5.27 -51.93 -0.27 1.10 16 42 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -31.15 329.44 -7.85 -39.01 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.21 Total: 0.42 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.20 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -1.30 Total: -47.54 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.22 Total: -11.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.15 -7.85 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331143422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.512 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds