Wall clock time and date at job start Mon Mar 30 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 120.00682 * 2 1 4 4 C 1.50706 * 119.99620 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.46788 * 274.99688 * 4 2 1 6 6 O 1.42901 * 109.47029 * 34.99576 * 4 2 1 7 7 C 1.53004 * 109.47146 * 154.99553 * 4 2 1 8 8 N 1.46903 * 109.46944 * 173.85516 * 7 4 2 9 9 C 1.46951 * 110.99751 * 199.01300 * 8 7 4 10 10 C 1.53055 * 109.36358 * 176.81640 * 9 8 7 11 11 N 1.46954 * 109.36526 * 58.40101 * 10 9 8 12 12 C 1.46899 * 111.00007 * 176.81259 * 11 10 9 13 13 C 1.50706 * 109.47077 * 59.36570 * 12 11 10 14 14 H 1.07995 * 119.99620 * 0.93224 * 13 12 11 15 15 C 1.37872 * 119.99799 * 180.92340 * 13 12 11 16 16 N 1.31510 * 120.00400 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99887 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46790 * 60.00665 * 17 15 13 19 19 H 1.48496 * 109.47439 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47181 * 300.00824 * 17 15 13 21 21 C 1.46960 * 110.87732 * 300.68137 * 11 10 9 22 22 C 1.46958 * 110.99556 * 75.21360 * 8 7 4 23 23 H 1.08989 * 109.47403 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46525 * 299.99894 * 1 2 3 25 25 H 1.08999 * 109.47272 * 59.99251 * 1 2 3 26 26 H 1.09000 * 109.47455 * 294.89425 * 5 4 2 27 27 H 1.08992 * 109.47385 * 54.89818 * 5 4 2 28 28 H 1.09002 * 109.46924 * 174.89713 * 5 4 2 29 29 H 0.96698 * 114.00190 * 60.00521 * 6 4 2 30 30 H 1.08991 * 109.47193 * 293.86193 * 7 4 2 31 31 H 1.09005 * 109.46498 * 53.85810 * 7 4 2 32 32 H 1.09001 * 109.49036 * 296.77990 * 9 8 7 33 33 H 1.09000 * 109.49407 * 56.84362 * 9 8 7 34 34 H 1.08997 * 109.48642 * 298.43426 * 10 9 8 35 35 H 1.08995 * 109.48708 * 178.37032 * 10 9 8 36 36 H 1.08997 * 109.46919 * 179.36512 * 12 11 10 37 37 H 1.08995 * 109.47041 * 299.36807 * 12 11 10 38 38 H 0.97001 * 120.00691 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.49019 * 299.34870 * 21 11 10 40 40 H 1.09000 * 109.48448 * 179.28859 * 21 11 10 41 41 H 1.08995 * 109.49000 * 303.15440 * 22 8 7 42 42 H 1.09007 * 109.48831 * 63.22061 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3052 -0.0006 5 6 2.4066 -1.8103 1.4362 6 8 1.5427 -2.2692 -0.7737 7 6 3.6477 -1.0930 -0.6102 8 7 4.4346 -2.3264 -0.4775 9 6 5.8710 -2.0527 -0.6235 10 6 6.6592 -3.3456 -0.4004 11 7 6.2179 -4.3586 -1.3691 12 6 7.0049 -5.5919 -1.2365 13 6 6.8495 -6.1394 0.1590 14 1 6.2164 -5.6310 0.8710 15 6 7.5156 -7.2892 0.5265 16 7 8.2869 -7.9081 -0.3405 17 14 7.3236 -7.9674 2.2564 18 1 5.8948 -8.2846 2.5079 19 1 8.1372 -9.2016 2.3975 20 1 7.7863 -6.9549 3.2392 21 6 4.7814 -4.6322 -1.2231 22 6 3.9933 -3.3394 -1.4463 23 1 -0.3633 -1.0275 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.0307 -1.1191 2.0027 27 1 1.4226 -1.8751 1.9004 28 1 2.8706 -2.7965 1.4292 29 1 1.4126 -2.0145 -1.6974 30 1 3.5459 -0.8386 -1.6651 31 1 4.1537 -0.2811 -0.0879 32 1 6.0691 -1.6746 -1.6264 33 1 6.1763 -1.3090 0.1126 34 1 6.4824 -3.7091 0.6119 35 1 7.7230 -3.1511 -0.5367 36 1 6.6502 -6.3285 -1.9574 37 1 8.0559 -5.3744 -1.4265 38 1 8.7558 -8.7169 -0.0819 39 1 4.5833 -5.0104 -0.2202 40 1 4.4763 -5.3759 -1.9593 41 1 2.9295 -3.5339 -1.3100 42 1 4.1700 -2.9759 -2.4586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331143422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:38 Heat of formation + Delta-G solvation = -95.785086 kcal Electronic energy + Delta-G solvation = -21973.331513 eV Core-core repulsion = 18759.736891 eV Total energy + Delta-G solvation = -3213.594622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35928 -39.97548 -38.17041 -36.27002 -34.43080 -32.61578 -31.72080 -30.93959 -29.60496 -27.61596 -25.94235 -24.36221 -23.83319 -22.85584 -20.72157 -20.52313 -18.48993 -18.22796 -17.05492 -16.99472 -16.67115 -16.27067 -15.90155 -15.76458 -15.68591 -15.40550 -14.86574 -14.69397 -14.37940 -13.68073 -13.58009 -13.38641 -13.27840 -13.25477 -13.04797 -12.88799 -12.83933 -12.69864 -12.53891 -12.34081 -12.14965 -12.03224 -11.88027 -11.79198 -11.48678 -11.24480 -10.60159 -10.17824 -9.26455 -8.99840 -8.14956 -6.34654 0.79845 1.37215 1.38802 1.47090 2.37907 2.62663 3.09683 3.16538 3.26381 3.41848 3.73314 3.92277 4.08075 4.15769 4.28608 4.34409 4.50870 4.55351 4.60793 4.67443 4.68063 4.72506 4.76147 4.89897 4.91691 4.97102 5.13245 5.16221 5.20463 5.26210 5.26807 5.33795 5.39542 5.73355 6.01948 6.07956 6.11259 6.28279 6.35827 6.54185 6.75063 6.85919 7.36795 8.87404 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.004383 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.447683 B = 6386.245303 C = 6710.246660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.344 3.656 3 O -0.486 6.486 4 C 0.103 3.897 5 C -0.123 4.123 6 O -0.538 6.538 7 C 0.040 3.960 8 N -0.534 5.534 9 C 0.068 3.932 10 C 0.068 3.932 11 N -0.544 5.544 12 C 0.201 3.799 13 C -0.554 4.554 14 H 0.056 0.944 15 C 0.012 3.988 16 N -0.928 5.928 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.271 1.271 21 C 0.066 3.934 22 C 0.060 3.940 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.391 0.609 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.025 0.975 35 H 0.060 0.940 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.021 0.979 40 H 0.061 0.939 41 H 0.119 0.881 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.631 15.243 0.175 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.221 3.779 3 O -0.361 6.361 4 C 0.061 3.939 5 C -0.180 4.180 6 O -0.346 6.346 7 C -0.089 4.089 8 N -0.258 5.258 9 C -0.060 4.060 10 C -0.060 4.060 11 N -0.268 5.268 12 C 0.074 3.926 13 C -0.593 4.593 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.062 4.062 22 C -0.067 4.067 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.241 0.759 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.137 0.863 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.191 15.328 0.695 22.307 hybrid contribution 0.649 -0.590 0.167 0.893 sum -15.542 14.739 0.862 21.437 Atomic orbital electron populations 1.22228 0.91045 1.06661 1.05611 1.25854 0.94153 0.89416 0.68493 1.90417 1.73022 1.35938 1.36748 1.21690 0.89594 0.87694 0.94942 1.21502 1.02654 1.02833 0.90999 1.86616 1.76613 1.44714 1.26684 1.22573 0.94531 0.92116 0.99648 1.62016 1.02960 1.09290 1.51571 1.22133 0.87558 0.96207 1.00113 1.21897 0.98099 0.91759 0.94290 1.62635 1.04063 1.10822 1.49312 1.19377 0.92184 0.86634 0.94429 1.21926 1.28266 1.09938 0.99193 0.92629 1.25810 0.94600 0.97019 1.01296 1.70056 1.30669 1.19369 1.36650 0.85622 0.78412 0.77781 0.79972 1.19468 1.20596 1.19577 1.21953 0.88065 0.97042 0.99190 1.22515 1.01095 0.90488 0.92625 0.87785 0.88082 0.87599 0.91410 0.90628 0.91190 0.75905 0.93724 0.89902 0.94520 0.89502 0.95709 0.92165 0.97816 0.97887 0.92589 0.96072 0.92095 0.86317 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 10.12 71.24 0.72 -1.24 16 2 C 0.34 5.88 6.19 29.10 0.18 6.06 16 3 O -0.49 -11.71 16.70 -1.44 -0.02 -11.74 16 4 C 0.10 1.93 1.03 -11.54 -0.01 1.92 16 5 C -0.12 -2.53 8.50 71.98 0.61 -1.92 16 6 O -0.54 -8.67 9.00 -148.98 -1.34 -10.01 16 7 C 0.04 0.90 3.98 86.30 0.34 1.25 16 8 N -0.53 -15.31 3.72 -895.71 -3.33 -18.65 16 9 C 0.07 2.13 5.57 86.31 0.48 2.61 16 10 C 0.07 2.76 5.24 86.31 0.45 3.21 16 11 N -0.54 -24.27 4.92 -900.29 -4.43 -28.70 16 12 C 0.20 10.90 5.14 85.56 0.44 11.34 16 13 C -0.55 -31.47 7.67 25.60 0.20 -31.27 16 14 H 0.06 3.14 5.80 -2.91 -0.02 3.13 16 15 C 0.01 0.69 5.46 84.65 0.46 1.15 16 16 N -0.93 -56.10 13.29 21.44 0.28 -55.82 16 17 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 C 0.07 2.63 5.31 86.31 0.46 3.09 16 22 C 0.06 1.79 5.30 86.31 0.46 2.25 16 23 H 0.10 0.83 7.27 -2.39 -0.02 0.82 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.82 7.63 -2.39 -0.02 1.80 16 29 H 0.39 3.57 9.04 -74.06 -0.67 2.90 16 30 H 0.04 0.95 8.00 -2.39 -0.02 0.93 16 31 H 0.08 2.00 7.35 -2.38 -0.02 1.99 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 2.40 8.00 -2.39 -0.02 2.38 16 34 H 0.02 1.12 6.56 -2.39 -0.02 1.10 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.00 0.22 8.12 -2.39 -0.02 0.20 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.02 0.94 6.83 -2.39 -0.02 0.93 16 40 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 41 H 0.12 3.07 5.27 -2.39 -0.01 3.05 16 42 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -68.32 329.44 -1.69 -70.00 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.33 Total: 9.78 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 4.79 Total: -1.55 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -7.48 Total: -103.16 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.36 Total: -21.74 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -68.32 -1.69 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331143422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.782 kcal (2) G-P(sol) polarization free energy of solvation -68.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds