Wall clock time and date at job start Mon Mar 30 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47489 * 2 1 4 4 C 1.42895 * 114.00615 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47318 * 180.02562 * 4 3 2 6 6 O 1.21272 * 120.00243 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99830 * 180.02562 * 5 4 3 8 8 C 1.47023 * 125.64895 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.27213 * 178.90571 * 8 7 5 10 10 H 1.08991 * 110.72110 * 219.26564 * 9 8 7 11 11 N 1.46506 * 110.71805 * 96.16860 * 9 8 7 12 12 C 1.36938 * 119.99589 * 88.84691 * 11 9 8 13 13 H 1.07999 * 120.00325 * 359.97438 * 12 11 9 14 14 C 1.38815 * 119.99408 * 179.97438 * 12 11 9 15 15 N 1.31617 * 120.00325 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99550 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47397 * 90.00455 * 16 14 12 18 18 H 1.48510 * 109.46813 * 210.00284 * 16 14 12 19 19 H 1.48495 * 109.47179 * 329.99902 * 16 14 12 20 20 C 1.55158 * 103.10078 * 337.72128 * 9 8 7 21 21 C 1.53000 * 111.00385 * 153.66718 * 20 9 8 22 22 C 1.53003 * 111.00032 * 277.51554 * 20 9 8 23 23 C 1.47423 * 125.64671 * 179.97438 * 7 5 4 24 24 H 1.09002 * 109.47183 * 59.99928 * 1 2 3 25 25 H 1.09007 * 109.47470 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47441 * 299.99955 * 1 2 3 27 27 H 1.09009 * 109.47106 * 240.00246 * 2 1 3 28 28 H 1.08994 * 109.47127 * 120.00384 * 2 1 3 29 29 H 1.09004 * 109.47016 * 59.99597 * 4 3 2 30 30 H 1.09001 * 109.47244 * 300.00391 * 4 3 2 31 31 H 1.09000 * 109.88432 * 59.49258 * 8 7 5 32 32 H 1.09006 * 110.01266 * 298.39551 * 8 7 5 33 33 H 0.96995 * 120.00050 * 268.56899 * 11 9 8 34 34 H 0.97000 * 119.99693 * 180.02562 * 15 14 12 35 35 H 1.08991 * 109.47487 * 59.99786 * 21 20 9 36 36 H 1.09005 * 109.47109 * 180.02562 * 21 20 9 37 37 H 1.09004 * 109.47004 * 299.99463 * 21 20 9 38 38 H 1.08996 * 109.47043 * 60.00277 * 22 20 9 39 39 H 1.09000 * 109.46961 * 180.02562 * 22 20 9 40 40 H 1.09000 * 109.47230 * 299.99885 * 22 20 9 41 41 H 1.08994 * 110.36922 * 322.99658 * 23 7 5 42 42 H 1.08997 * 110.36891 * 85.21839 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 8 2.9610 3.7728 0.0005 7 7 5.1209 3.2663 -0.0008 8 6 6.2587 2.3351 -0.0030 9 6 7.5464 3.1853 -0.0315 10 1 8.2946 2.7303 -0.6804 11 7 8.0778 3.3665 1.3217 12 6 8.9560 2.4527 1.8404 13 1 9.2566 1.5983 1.2521 14 6 9.4600 2.6247 3.1223 15 7 9.0933 3.6657 3.8394 16 14 10.6574 1.3779 3.8302 17 1 12.0471 1.7821 3.4978 18 1 10.4980 1.3208 5.3056 19 1 10.3790 0.0396 3.2501 20 6 7.0618 4.5381 -0.6166 21 6 7.9556 5.6890 -0.1501 22 6 6.9956 4.4826 -2.1442 23 6 5.6393 4.6463 -0.0008 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8932 -0.5139 0.8899 29 1 3.8332 0.9767 -0.8908 30 1 3.8340 0.9764 0.8891 31 1 6.2152 1.6987 -0.8868 32 1 6.2398 1.7209 0.8973 33 1 7.8108 4.1358 1.8487 34 1 9.4458 3.7860 4.7351 35 1 8.9788 5.5116 -0.4811 36 1 7.5933 6.6254 -0.5744 37 1 7.9310 5.7500 0.9379 38 1 6.3003 3.7007 -2.4495 39 1 6.6536 5.4436 -2.5282 40 1 7.9861 4.2640 -2.5431 41 1 5.0084 5.2886 -0.6151 42 1 5.6938 5.0311 1.0175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332346086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:00 Heat of formation + Delta-G solvation = -90.713249 kcal Electronic energy + Delta-G solvation = -21657.584424 eV Core-core repulsion = 18444.209733 eV Total energy + Delta-G solvation = -3213.374691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38725 -39.63659 -38.39843 -35.72042 -34.63543 -32.60190 -32.42046 -29.50344 -29.38358 -28.00106 -26.54580 -25.58157 -23.68866 -23.09622 -20.51349 -20.09410 -19.09176 -18.24621 -17.65016 -17.36892 -16.95601 -16.38248 -16.31626 -15.74480 -15.47422 -15.01267 -14.72266 -14.47709 -14.06428 -13.88243 -13.72364 -13.37678 -13.23198 -13.22251 -13.03206 -12.80322 -12.76762 -12.66699 -12.34273 -12.20122 -12.14446 -12.05479 -11.81399 -11.44397 -11.27651 -10.99534 -10.83050 -10.69896 -9.66376 -8.99716 -7.90555 -5.18999 1.50292 1.51666 1.51864 1.59922 1.71350 2.58989 2.89080 3.38368 3.41141 3.72438 3.82181 3.89483 4.06310 4.10792 4.13284 4.23991 4.32848 4.33746 4.48256 4.48847 4.61024 4.66987 4.80233 4.81138 4.90495 4.91816 5.01742 5.02767 5.10487 5.10737 5.24226 5.26857 5.34577 5.40999 5.56110 5.61759 6.08866 6.30368 6.50995 7.08227 7.38157 8.12422 8.35142 9.32794 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.005186 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.671396 B = 5398.058000 C = 6586.470639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.400 6.400 4 C 0.056 3.944 5 C 0.519 3.481 6 O -0.581 6.581 7 N -0.603 5.603 8 C 0.077 3.923 9 C 0.169 3.831 10 H 0.084 0.916 11 N -0.724 5.724 12 C -0.235 4.235 13 H 0.085 0.915 14 C -0.072 4.072 15 N -0.970 5.970 16 Si 0.967 3.033 17 H -0.290 1.290 18 H -0.305 1.305 19 H -0.266 1.266 20 C -0.077 4.077 21 C -0.119 4.119 22 C -0.122 4.122 23 C 0.120 3.880 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.374 0.626 34 H 0.248 0.752 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.411 -6.522 -12.889 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.320 6.320 4 C -0.023 4.023 5 C 0.308 3.692 6 O -0.461 6.461 7 N -0.337 5.337 8 C -0.048 4.048 9 C 0.059 3.941 10 H 0.102 0.898 11 N -0.364 5.364 12 C -0.366 4.366 13 H 0.103 0.897 14 C -0.265 4.265 15 N -0.621 5.621 16 Si 0.797 3.203 17 H -0.217 1.217 18 H -0.232 1.232 19 H -0.190 1.190 20 C -0.078 4.078 21 C -0.177 4.177 22 C -0.180 4.180 23 C -0.002 4.002 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.207 0.793 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.951 -6.123 -12.862 16.825 hybrid contribution 0.725 -0.254 1.377 1.577 sum -8.227 -6.378 -11.485 15.500 Atomic orbital electron populations 1.21770 0.92810 1.03599 1.02483 1.22820 0.96515 0.81928 1.01687 1.87963 1.19298 1.28941 1.95748 1.22167 0.83411 0.92208 1.04498 1.20538 0.80862 0.91738 0.76017 1.90658 1.49859 1.53527 1.52051 1.48393 1.04783 1.08911 1.71569 1.23185 0.86488 0.93217 1.01935 1.21494 0.92413 0.93394 0.86771 0.89782 1.42633 1.52313 1.28255 1.13155 1.19665 1.16880 1.02997 0.97086 0.89699 1.25478 1.03072 0.99952 0.97976 1.69822 1.49551 1.31608 1.11103 0.85232 0.78962 0.79389 0.76707 1.21730 1.23194 1.19026 1.22065 0.92635 0.96047 0.97061 1.21494 0.99076 0.96770 1.00364 1.21640 1.02709 1.02484 0.91148 1.22322 0.94833 0.83387 0.99686 0.92369 0.88314 0.92938 0.91182 0.92174 0.87253 0.89156 0.88713 0.92220 0.79272 0.94326 0.92226 0.91289 0.94474 0.92383 0.91466 0.90900 0.90799 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.05 0.89 6.66 71.98 0.48 1.37 16 3 O -0.40 -11.64 9.88 -129.94 -1.28 -12.93 16 4 C 0.06 1.49 5.61 71.24 0.40 1.89 16 5 C 0.52 18.09 7.93 87.66 0.69 18.79 16 6 O -0.58 -25.18 16.75 16.03 0.27 -24.91 16 7 N -0.60 -19.75 3.32 -810.85 -2.69 -22.44 16 8 C 0.08 2.32 5.91 86.73 0.51 2.83 16 9 C 0.17 5.73 2.86 46.18 0.13 5.86 16 10 H 0.08 2.67 8.01 -2.39 -0.02 2.65 16 11 N -0.72 -32.82 4.56 -317.32 -1.45 -34.26 16 12 C -0.23 -11.81 9.97 84.03 0.84 -10.97 16 13 H 0.09 3.98 7.83 -2.91 -0.02 3.96 16 14 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 15 N -0.97 -57.47 13.06 21.65 0.28 -57.18 16 16 Si 0.97 43.94 29.55 68.60 2.03 45.97 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 C -0.08 -2.24 0.84 -50.62 -0.04 -2.28 16 21 C -0.12 -3.67 8.23 71.98 0.59 -3.07 16 22 C -0.12 -2.72 8.58 71.98 0.62 -2.10 16 23 C 0.12 4.01 5.83 87.02 0.51 4.52 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.05 8.04 -2.38 -0.02 2.03 16 33 H 0.37 18.95 6.20 -92.71 -0.57 18.38 16 34 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.75 16 37 H 0.04 1.38 6.44 -2.38 -0.02 1.37 16 38 H 0.06 1.25 7.91 -2.39 -0.02 1.23 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 2.40 7.95 -2.39 -0.02 2.38 16 42 H 0.04 1.64 8.00 -2.39 -0.02 1.63 16 Total: -1.00 -69.04 343.05 3.51 -65.53 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.41 Total: 28.64 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.94 Total: 11.59 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -3.85 Total: -113.89 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.01 Total: -37.84 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.04 3.51 -65.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332346086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.182 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds