Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46785 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00221 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99728 * 179.97438 * 5 4 3 8 8 C 1.47421 * 125.64959 * 359.69501 * 7 5 4 9 9 C 1.55124 * 104.72558 * 155.81588 * 8 7 5 10 10 H 1.08996 * 110.90802 * 155.27032 * 9 8 7 11 11 N 1.46496 * 111.19388 * 279.19072 * 9 8 7 12 12 C 1.36939 * 120.00000 * 267.18791 * 11 9 8 13 13 H 1.07995 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.38811 * 119.99803 * 179.97438 * 12 11 9 15 15 N 1.31622 * 119.99623 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00490 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47280 * 89.99544 * 16 14 12 18 18 H 1.48495 * 109.47385 * 209.99997 * 16 14 12 19 19 H 1.48510 * 109.46992 * 330.00123 * 16 14 12 20 20 C 1.55155 * 101.48475 * 37.29310 * 9 8 7 21 21 C 1.53003 * 110.72228 * 205.96957 * 20 9 8 22 22 C 1.53003 * 110.87265 * 82.76953 * 20 9 8 23 23 C 1.47025 * 125.64806 * 179.97438 * 7 5 4 24 24 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 30 30 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 31 31 H 1.09001 * 110.36692 * 274.74300 * 8 7 5 32 32 H 1.09000 * 110.36886 * 37.06543 * 8 7 5 33 33 H 0.97008 * 120.00061 * 87.18203 * 11 9 8 34 34 H 0.97006 * 119.99881 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47293 * 174.97085 * 21 20 9 36 36 H 1.08997 * 109.47275 * 294.97748 * 21 20 9 37 37 H 1.08998 * 109.46896 * 54.97686 * 21 20 9 38 38 H 1.08994 * 109.46946 * 304.93426 * 22 20 9 39 39 H 1.08993 * 109.47168 * 64.93666 * 22 20 9 40 40 H 1.09004 * 109.46961 * 184.93686 * 22 20 9 41 41 H 1.09004 * 109.88117 * 300.43959 * 23 7 5 42 42 H 1.09001 * 109.87847 * 61.44864 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8192 2.9163 -0.0001 6 8 2.9608 3.7729 -0.0015 7 7 5.1208 3.2665 0.0008 8 6 6.2617 2.3330 0.0089 9 6 7.4350 3.1389 -0.6078 10 1 8.3950 2.7465 -0.2726 11 7 7.3573 3.1520 -2.0707 12 6 8.0240 2.2041 -2.8002 13 1 8.6073 1.4471 -2.2972 14 6 7.9500 2.2162 -4.1863 15 7 8.5912 1.3054 -4.8875 16 14 6.9404 3.5250 -5.0564 17 1 7.7974 4.7043 -5.3397 18 1 6.4144 2.9774 -6.3325 19 1 5.8068 3.9341 -4.1886 20 6 7.1782 4.5536 -0.0246 21 6 7.7681 5.6306 -0.9373 22 6 7.7502 4.6723 1.3894 23 6 5.6378 4.6429 -0.0002 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8332 0.9769 0.8908 30 1 3.8340 0.9766 -0.8891 31 1 6.4995 2.0333 1.0295 32 1 6.0404 1.4581 -0.6024 33 1 6.8336 3.8321 -2.5225 34 1 8.5398 1.3141 -5.8562 35 1 7.4999 6.6162 -0.5567 36 1 8.8535 5.5330 -0.9601 37 1 7.3712 5.5101 -1.9452 38 1 7.3407 3.8791 2.0148 39 1 8.8357 4.5810 1.3511 40 1 7.4818 5.6416 1.8098 41 1 5.2828 5.1715 -0.8850 42 1 5.3086 5.1631 0.8992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332346087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = -66.904986 kcal Electronic energy + Delta-G solvation = -21894.041405 eV Core-core repulsion = 18681.699118 eV Total energy + Delta-G solvation = -3212.342287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12484 -38.45694 -37.20775 -34.03588 -33.37350 -31.56401 -31.12717 -28.39328 -28.29488 -26.88721 -25.31189 -23.65176 -22.85121 -21.49462 -19.24826 -19.00759 -17.65917 -17.04932 -16.51451 -16.21178 -15.68998 -15.17362 -14.68247 -14.42945 -13.90532 -13.87507 -13.46596 -13.14148 -12.75220 -12.71989 -12.57626 -12.44135 -12.25492 -12.11642 -11.75204 -11.63784 -11.41596 -11.33522 -11.30337 -11.02769 -10.65074 -10.59169 -10.30115 -10.00856 -9.71446 -9.66280 -9.53618 -9.09373 -8.35813 -7.38764 -5.88552 -3.25237 2.83140 2.90164 3.31340 3.36202 3.40665 3.95466 4.49952 4.55793 4.88654 4.92988 4.94826 4.97773 5.10442 5.20413 5.24199 5.26655 5.31890 5.44385 5.52443 5.54911 5.62914 5.76061 5.79820 5.82107 5.89619 5.99857 6.00435 6.04929 6.10218 6.18990 6.21474 6.40181 6.49099 6.61187 6.66701 7.06135 7.77384 7.86065 8.30463 8.41800 9.07630 9.80534 9.99184 11.29028 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014024 B = 0.006494 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.113319 B = 4310.842592 C = 5505.269716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.367 6.367 4 C 0.050 3.950 5 C 0.530 3.470 6 O -0.535 6.535 7 N -0.606 5.606 8 C 0.065 3.935 9 C 0.185 3.815 10 H 0.084 0.916 11 N -0.734 5.734 12 C -0.251 4.251 13 H 0.093 0.907 14 C 0.013 3.987 15 N -0.929 5.929 16 Si 0.876 3.124 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.277 1.277 20 C -0.093 4.093 21 C -0.127 4.127 22 C -0.131 4.131 23 C 0.122 3.878 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.364 0.636 34 H 0.261 0.739 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 0.796 13.049 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.286 6.286 4 C -0.030 4.030 5 C 0.317 3.683 6 O -0.411 6.411 7 N -0.341 5.341 8 C -0.061 4.061 9 C 0.073 3.927 10 H 0.102 0.898 11 N -0.375 5.375 12 C -0.380 4.380 13 H 0.111 0.889 14 C -0.184 4.184 15 N -0.575 5.575 16 Si 0.706 3.294 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.203 1.203 20 C -0.095 4.095 21 C -0.185 4.185 22 C -0.188 4.188 23 C 0.000 4.000 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.198 0.802 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.192 1.182 12.920 14.834 hybrid contribution -0.533 0.472 -0.839 1.100 sum -7.726 1.654 12.081 14.435 Atomic orbital electron populations 1.21721 0.93567 1.02079 1.03321 1.22536 0.95794 0.83567 1.00304 1.87984 1.18884 1.26220 1.95474 1.22149 0.83332 0.94727 1.02742 1.19799 0.81150 0.90428 0.76910 1.90685 1.48748 1.51974 1.49734 1.48279 1.04777 1.08435 1.72581 1.23500 0.88057 0.94489 1.00075 1.21340 0.95564 0.90969 0.84839 0.89772 1.42744 1.59267 1.35338 1.00137 1.19047 1.23484 1.06541 0.88973 0.88912 1.24628 0.99629 0.98031 0.96099 1.69690 1.46147 1.35719 1.05981 0.86687 0.80593 0.82378 0.79738 1.20793 1.21582 1.20292 1.21972 0.93181 0.97902 0.96395 1.21650 1.01458 0.96211 0.99200 1.21744 1.01010 1.01470 0.94592 1.21990 0.93214 0.83341 1.01460 0.91855 0.91712 0.91064 0.93012 0.93297 0.90534 0.89820 0.91960 0.89954 0.80156 0.92907 0.93284 0.91707 0.92096 0.92584 0.91997 0.92668 0.91812 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.09 16 2 C 0.05 0.63 6.66 37.16 0.25 0.87 16 3 O -0.37 -5.82 9.88 -55.14 -0.54 -6.36 16 4 C 0.05 0.74 5.42 36.01 0.20 0.94 16 5 C 0.53 9.59 7.93 -10.98 -0.09 9.50 16 6 O -0.53 -11.62 16.83 -14.35 -0.24 -11.86 16 7 N -0.61 -10.08 3.33 -170.38 -0.57 -10.64 16 8 C 0.06 0.99 6.09 -2.41 -0.01 0.98 16 9 C 0.19 3.13 2.96 -65.67 -0.19 2.94 16 10 H 0.08 1.40 7.99 -51.93 -0.42 0.99 16 11 N -0.73 -15.91 4.37 -51.24 -0.22 -16.13 16 12 C -0.25 -6.53 10.44 -15.06 -0.16 -6.69 16 13 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 14 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 15 N -0.93 -27.98 13.97 55.49 0.78 -27.20 16 16 Si 0.88 21.71 27.73 -169.99 -4.71 16.99 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 20 C -0.09 -1.33 0.80 -152.67 -0.12 -1.45 16 21 C -0.13 -1.85 8.15 37.16 0.30 -1.55 16 22 C -0.13 -1.47 8.44 37.16 0.31 -1.16 16 23 C 0.12 1.93 6.03 -3.06 -0.02 1.91 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 31 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 32 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 33 H 0.36 8.16 4.19 -40.82 -0.17 7.99 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.02 6.34 -51.93 -0.33 0.69 16 38 H 0.06 0.60 7.44 -51.93 -0.39 0.22 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 42 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -32.71 338.01 -6.80 -39.51 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.13 Total: 5.14 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 0.75 Total: 5.47 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.02 Total: -53.97 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.79 Total: -18.22 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.71 -6.80 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332346087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.398 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds