Wall clock time and date at job start Mon Mar 30 2020 01:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46785 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00221 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99728 * 179.97438 * 5 4 3 8 8 C 1.47421 * 125.64959 * 359.69501 * 7 5 4 9 9 C 1.55124 * 104.72558 * 155.81588 * 8 7 5 10 10 H 1.08996 * 110.90802 * 155.27032 * 9 8 7 11 11 N 1.46496 * 111.19388 * 279.19072 * 9 8 7 12 12 C 1.36939 * 120.00000 * 267.18791 * 11 9 8 13 13 H 1.07995 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.38811 * 119.99803 * 179.97438 * 12 11 9 15 15 N 1.31622 * 119.99623 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00490 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47280 * 89.99544 * 16 14 12 18 18 H 1.48495 * 109.47385 * 209.99997 * 16 14 12 19 19 H 1.48510 * 109.46992 * 330.00123 * 16 14 12 20 20 C 1.55155 * 101.48475 * 37.29310 * 9 8 7 21 21 C 1.53003 * 110.72228 * 205.96957 * 20 9 8 22 22 C 1.53003 * 110.87265 * 82.76953 * 20 9 8 23 23 C 1.47025 * 125.64806 * 179.97438 * 7 5 4 24 24 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 30 30 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 31 31 H 1.09001 * 110.36692 * 274.74300 * 8 7 5 32 32 H 1.09000 * 110.36886 * 37.06543 * 8 7 5 33 33 H 0.97008 * 120.00061 * 87.18203 * 11 9 8 34 34 H 0.97006 * 119.99881 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47293 * 174.97085 * 21 20 9 36 36 H 1.08997 * 109.47275 * 294.97748 * 21 20 9 37 37 H 1.08998 * 109.46896 * 54.97686 * 21 20 9 38 38 H 1.08994 * 109.46946 * 304.93426 * 22 20 9 39 39 H 1.08993 * 109.47168 * 64.93666 * 22 20 9 40 40 H 1.09004 * 109.46961 * 184.93686 * 22 20 9 41 41 H 1.09004 * 109.88117 * 300.43959 * 23 7 5 42 42 H 1.09001 * 109.87847 * 61.44864 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8192 2.9163 -0.0001 6 8 2.9608 3.7729 -0.0015 7 7 5.1208 3.2665 0.0008 8 6 6.2617 2.3330 0.0089 9 6 7.4350 3.1389 -0.6078 10 1 8.3950 2.7465 -0.2726 11 7 7.3573 3.1520 -2.0707 12 6 8.0240 2.2041 -2.8002 13 1 8.6073 1.4471 -2.2972 14 6 7.9500 2.2162 -4.1863 15 7 8.5912 1.3054 -4.8875 16 14 6.9404 3.5250 -5.0564 17 1 7.7974 4.7043 -5.3397 18 1 6.4144 2.9774 -6.3325 19 1 5.8068 3.9341 -4.1886 20 6 7.1782 4.5536 -0.0246 21 6 7.7681 5.6306 -0.9373 22 6 7.7502 4.6723 1.3894 23 6 5.6378 4.6429 -0.0002 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8332 0.9769 0.8908 30 1 3.8340 0.9766 -0.8891 31 1 6.4995 2.0333 1.0295 32 1 6.0404 1.4581 -0.6024 33 1 6.8336 3.8321 -2.5225 34 1 8.5398 1.3141 -5.8562 35 1 7.4999 6.6162 -0.5567 36 1 8.8535 5.5330 -0.9601 37 1 7.3712 5.5101 -1.9452 38 1 7.3407 3.8791 2.0148 39 1 8.8357 4.5810 1.3511 40 1 7.4818 5.6416 1.8098 41 1 5.2828 5.1715 -0.8850 42 1 5.3086 5.1631 0.8992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332346087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:01 Heat of formation + Delta-G solvation = -88.566775 kcal Electronic energy + Delta-G solvation = -21894.980730 eV Core-core repulsion = 18681.699118 eV Total energy + Delta-G solvation = -3213.281613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44707 -39.70735 -38.43545 -35.81765 -34.71538 -33.03548 -32.45249 -29.80674 -29.45633 -28.04099 -26.51646 -25.38646 -23.71464 -23.01046 -20.63411 -20.38951 -19.39652 -18.29601 -17.68191 -17.40650 -17.01060 -16.50631 -16.32309 -15.96733 -15.28158 -14.99283 -14.77228 -14.56928 -14.20379 -14.03515 -13.78289 -13.59212 -13.40568 -13.25218 -13.13574 -12.93346 -12.81882 -12.65502 -12.36685 -12.28793 -12.22937 -11.94286 -11.84509 -11.58911 -11.34207 -11.05292 -10.88020 -10.72954 -9.78819 -9.24429 -8.03417 -5.34350 1.32443 1.35411 1.39477 1.47365 1.69363 2.44206 2.86697 3.26691 3.34714 3.54141 3.71398 3.79243 3.98744 4.08412 4.11030 4.21776 4.27135 4.31491 4.42350 4.46500 4.57224 4.67401 4.74300 4.79117 4.87142 4.88721 4.97054 4.99658 5.05429 5.11400 5.22771 5.27457 5.29342 5.40854 5.52998 5.79775 6.05983 6.21898 6.45363 7.05744 7.06889 7.83789 8.00462 9.17683 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014024 B = 0.006494 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.113319 B = 4310.842592 C = 5505.269716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.400 6.400 4 C 0.055 3.945 5 C 0.519 3.481 6 O -0.580 6.580 7 N -0.605 5.605 8 C 0.072 3.928 9 C 0.171 3.829 10 H 0.093 0.907 11 N -0.739 5.739 12 C -0.217 4.217 13 H 0.075 0.925 14 C -0.051 4.051 15 N -0.977 5.977 16 Si 0.932 3.068 17 H -0.276 1.276 18 H -0.300 1.300 19 H -0.272 1.272 20 C -0.079 4.079 21 C -0.128 4.128 22 C -0.125 4.125 23 C 0.118 3.882 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.361 0.639 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 0.961 15.401 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.319 6.319 4 C -0.025 4.025 5 C 0.309 3.691 6 O -0.461 6.461 7 N -0.339 5.339 8 C -0.053 4.053 9 C 0.061 3.939 10 H 0.111 0.889 11 N -0.381 5.381 12 C -0.348 4.348 13 H 0.093 0.907 14 C -0.243 4.243 15 N -0.628 5.628 16 Si 0.761 3.239 17 H -0.203 1.203 18 H -0.227 1.227 19 H -0.198 1.198 20 C -0.080 4.080 21 C -0.186 4.186 22 C -0.182 4.182 23 C -0.004 4.004 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.194 0.806 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.286 1.360 15.336 17.033 hybrid contribution -0.486 0.408 -1.451 1.584 sum -7.772 1.768 13.885 16.010 Atomic orbital electron populations 1.21766 0.92664 1.03641 1.02501 1.22827 0.96624 0.81936 1.01623 1.87955 1.19307 1.28923 1.95741 1.22179 0.83413 0.92535 1.04329 1.20470 0.81051 0.91563 0.76051 1.90654 1.49964 1.53449 1.52006 1.48396 1.04806 1.09054 1.71635 1.23464 0.86480 0.93311 1.02022 1.21677 0.96631 0.93438 0.82173 0.88938 1.42796 1.58769 1.34276 1.02238 1.19078 1.21146 1.05632 0.88907 0.90690 1.25198 1.01727 1.00172 0.97171 1.69823 1.48970 1.38162 1.05836 0.85775 0.79473 0.80372 0.78234 1.20259 1.22723 1.19774 1.21932 0.92119 0.95790 0.98198 1.21655 1.01365 0.97720 0.97848 1.21724 1.01479 1.02874 0.92130 1.22098 0.94177 0.83068 1.01090 0.92180 0.93025 0.88288 0.92501 0.91045 0.87148 0.89650 0.87857 0.91071 0.80557 0.93506 0.90906 0.91538 0.94895 0.91554 0.91007 0.91051 0.94095 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.05 0.96 6.66 71.98 0.48 1.44 16 3 O -0.40 -12.27 9.88 -129.94 -1.28 -13.55 16 4 C 0.05 1.53 5.42 71.24 0.39 1.92 16 5 C 0.52 18.25 7.93 87.66 0.69 18.95 16 6 O -0.58 -25.24 16.83 16.02 0.27 -24.97 16 7 N -0.61 -18.97 3.33 -811.36 -2.70 -21.67 16 8 C 0.07 2.00 6.09 86.93 0.53 2.53 16 9 C 0.17 5.38 2.96 46.46 0.14 5.52 16 10 H 0.09 2.82 7.99 -2.39 -0.02 2.80 16 11 N -0.74 -31.33 4.37 -316.04 -1.38 -32.71 16 12 C -0.22 -11.25 10.44 84.03 0.88 -10.37 16 13 H 0.08 4.13 8.06 -2.91 -0.02 4.11 16 14 C -0.05 -2.85 5.50 84.86 0.47 -2.39 16 15 N -0.98 -60.14 13.97 21.65 0.30 -59.84 16 16 Si 0.93 45.62 27.73 68.60 1.90 47.52 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 19 H -0.27 -12.87 6.52 99.48 0.65 -12.22 16 20 C -0.08 -2.04 0.80 -50.99 -0.04 -2.08 16 21 C -0.13 -3.45 8.15 71.98 0.59 -2.87 16 22 C -0.12 -2.28 8.44 71.98 0.61 -1.67 16 23 C 0.12 3.50 6.03 86.73 0.52 4.02 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.09 2.34 7.85 -2.39 -0.02 2.32 16 31 H 0.10 2.11 7.71 -2.39 -0.02 2.09 16 32 H 0.07 2.18 7.48 -2.39 -0.02 2.16 16 33 H 0.36 15.91 4.19 -92.70 -0.39 15.53 16 34 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.03 1.06 6.34 -2.39 -0.02 1.05 16 38 H 0.07 1.10 7.44 -2.39 -0.02 1.09 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.04 1.40 7.82 -2.38 -0.02 1.38 16 42 H 0.08 2.09 7.85 -2.39 -0.02 2.07 16 Total: -1.00 -72.33 338.01 3.64 -68.69 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.54 Total: 23.48 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.99 Total: 13.04 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -3.78 Total: -114.22 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.01 Total: -38.52 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -72.33 3.64 -68.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332346087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.875 kcal (2) G-P(sol) polarization free energy of solvation -72.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds