Wall clock time and date at job start Mon Mar 30 2020 01:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47898 * 111.00675 * 2 1 4 4 C 1.53988 * 107.06464 * 145.84499 * 3 2 1 5 5 C 1.54602 * 105.13655 * 358.77849 * 4 3 2 6 6 O 1.42900 * 110.72762 * 96.57810 * 5 4 3 7 7 C 1.53002 * 110.72056 * 219.68625 * 5 4 3 8 8 N 1.46496 * 109.47045 * 180.02562 * 7 5 4 9 9 C 1.34784 * 120.00155 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99673 * 359.97438 * 9 8 7 11 11 C 1.50696 * 120.00109 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47055 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99933 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99912 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47017 * 89.99937 * 18 16 14 20 20 H 1.48507 * 109.47241 * 209.99826 * 18 16 14 21 21 H 1.48500 * 109.47209 * 329.99791 * 18 16 14 22 22 C 1.48535 * 111.00024 * 117.39565 * 2 1 3 23 23 H 1.08995 * 109.47070 * 59.86905 * 1 2 3 24 24 H 1.08997 * 109.47268 * 179.87901 * 1 2 3 25 25 H 1.09010 * 109.46887 * 299.88001 * 1 2 3 26 26 H 1.09002 * 109.91515 * 26.48755 * 3 2 1 27 27 H 1.09000 * 110.07862 * 265.29406 * 3 2 1 28 28 H 1.09000 * 110.31061 * 239.85955 * 4 3 2 29 29 H 1.08997 * 110.31015 * 117.68548 * 4 3 2 30 30 H 0.96701 * 113.99764 * 182.44702 * 6 5 4 31 31 H 1.09001 * 109.47600 * 59.99469 * 7 5 4 32 32 H 1.09004 * 109.47006 * 299.99690 * 7 5 4 33 33 H 0.97002 * 120.00100 * 359.97438 * 8 7 5 34 34 H 1.09001 * 109.47324 * 59.99162 * 11 9 8 35 35 H 1.09004 * 109.47043 * 299.99530 * 11 9 8 36 36 H 1.09001 * 109.46832 * 59.99966 * 12 11 9 37 37 H 1.08993 * 109.47194 * 299.99487 * 12 11 9 38 38 H 1.09001 * 109.46801 * 300.00272 * 13 12 11 39 39 H 1.09001 * 109.46998 * 59.99868 * 13 12 11 40 40 H 0.97007 * 120.00011 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.66510 * 81.83988 * 22 2 1 42 42 H 1.08994 * 110.67097 * 318.71049 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2984 1.3658 0.8265 5 6 3.4492 -0.0931 1.3153 6 8 4.3208 -0.8277 0.4534 7 6 3.9589 -0.1309 2.7574 8 7 4.0922 -1.5235 3.1919 9 6 4.5279 -1.8025 4.4365 10 8 4.8101 -0.9005 5.1965 11 6 4.6645 -3.2351 4.8836 12 6 5.1743 -3.2729 6.3257 13 6 5.3123 -4.7274 6.7799 14 6 5.8151 -4.7646 8.2000 15 1 6.0156 -3.8430 8.7262 16 6 6.0180 -5.9752 8.8280 17 7 6.4562 -6.0077 10.0675 18 14 5.6704 -7.5692 7.9182 19 1 6.8979 -8.0127 7.2099 20 1 5.2547 -8.6130 8.8893 21 1 4.5821 -7.3491 6.9320 22 6 2.0013 -0.6381 1.2312 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3633 -1.0276 -0.0022 25 1 -0.3633 0.5120 0.8911 26 1 1.2760 2.0561 0.4571 27 1 2.2117 1.6999 -1.0203 28 1 3.2138 2.0429 1.6765 29 1 4.1471 1.6452 0.2022 30 1 4.4195 -1.7589 0.6949 31 1 3.2523 0.3866 3.4063 32 1 4.9301 0.3611 2.8125 33 1 3.8662 -2.2450 2.5841 34 1 5.3714 -3.7524 4.2349 35 1 3.6934 -3.7271 4.8282 36 1 4.4675 -2.7555 6.9745 37 1 6.1454 -2.7810 6.3807 38 1 4.3410 -5.2189 6.7248 39 1 6.0188 -5.2452 6.1310 40 1 6.5993 -6.8594 10.5092 41 1 2.0040 -1.7235 1.1316 42 1 1.4238 -0.3322 2.1035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332915909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:07 Heat of formation + Delta-G solvation = -93.644092 kcal Electronic energy + Delta-G solvation = -20662.138804 eV Core-core repulsion = 17448.637022 eV Total energy + Delta-G solvation = -3213.501782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44616 -39.20984 -36.51879 -34.49807 -34.19225 -32.20948 -31.93129 -29.63118 -28.44368 -27.01609 -24.85840 -23.32603 -21.78478 -20.83182 -20.47802 -19.87177 -17.80656 -16.93382 -16.58492 -16.22000 -15.84506 -15.70257 -15.32977 -14.85309 -14.31976 -14.21018 -13.84196 -13.68215 -13.41795 -13.12760 -12.71710 -12.62602 -12.50416 -12.06734 -12.02024 -11.96319 -11.65811 -11.56762 -11.22363 -10.99478 -10.79484 -10.35832 -10.04222 -9.87160 -9.71618 -9.46824 -9.21459 -9.14235 -8.89139 -8.51504 -6.01085 -3.99001 2.78614 3.04681 3.31226 3.38339 3.40880 3.49183 3.66972 4.05842 4.12066 4.40571 4.46620 4.67737 4.84861 4.94407 4.94963 5.00491 5.15496 5.18736 5.32092 5.32550 5.36245 5.44190 5.45952 5.51632 5.56582 5.61915 5.66881 6.06489 6.24194 6.33821 6.51734 6.54262 6.67117 6.90761 7.22593 7.35070 7.40351 7.44560 7.82095 8.30010 8.58733 9.05591 9.60847 11.12618 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.002941 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.966321 B = 9517.399291 C = 9827.467437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.515 5.515 3 C 0.037 3.963 4 C -0.117 4.117 5 C 0.121 3.879 6 O -0.537 6.537 7 C 0.100 3.900 8 N -0.741 5.741 9 C 0.514 3.486 10 O -0.531 6.531 11 C -0.141 4.141 12 C -0.088 4.088 13 C -0.014 4.014 14 C -0.519 4.519 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.904 5.904 18 Si 0.882 3.118 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.009 3.991 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.375 0.625 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.395 0.605 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.087 0.913 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 12.112 -23.504 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.238 5.238 3 C -0.091 4.091 4 C -0.156 4.156 5 C 0.079 3.921 6 O -0.343 6.343 7 C -0.025 4.025 8 N -0.396 5.396 9 C 0.302 3.698 10 O -0.406 6.406 11 C -0.181 4.181 12 C -0.126 4.126 13 C -0.052 4.052 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.137 4.137 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.119 4.119 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.223 0.777 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.229 0.771 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.870 12.967 -23.560 29.006 hybrid contribution -0.685 -1.366 0.334 1.564 sum -11.554 11.601 -23.225 28.417 Atomic orbital electron populations 1.22561 0.87617 1.02439 1.00892 1.64710 1.08127 1.14921 1.36090 1.22881 0.95300 0.89900 1.01011 1.22407 0.98921 0.93629 1.00614 1.22265 0.88464 0.93254 0.88157 1.86615 1.67037 1.25790 1.54841 1.21944 1.02570 0.84321 0.93670 1.46061 1.70192 1.07673 1.15719 1.21199 0.75399 0.92709 0.80483 1.90706 1.48293 1.48594 1.53034 1.21880 1.03484 0.91447 1.01320 1.21271 1.01101 0.99525 0.90688 1.19606 0.96346 0.92022 0.97190 1.21164 1.43690 0.94449 0.96428 0.90947 1.25058 0.94697 0.99151 0.94770 1.69926 1.46518 1.25994 1.11919 0.86753 0.79095 0.83424 0.79812 1.20329 1.21460 1.19058 1.23953 0.95242 1.00668 0.92067 0.91123 0.91091 0.95256 0.93417 0.89862 0.89630 0.89163 0.77740 0.90686 0.90387 0.77094 0.89231 0.89324 0.92096 0.92060 0.96676 0.97070 0.92785 0.89483 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.40 60.06 0.56 0.65 16 2 N -0.51 -4.16 5.55 -238.72 -1.33 -5.48 16 3 C 0.04 0.26 6.70 -2.76 -0.02 0.24 16 4 C -0.12 -0.86 6.27 -25.37 -0.16 -1.02 16 5 C 0.12 0.97 1.03 -88.75 -0.09 0.87 16 6 O -0.54 -4.76 13.11 -35.23 -0.46 -5.23 16 7 C 0.10 0.96 4.74 -4.04 -0.02 0.94 16 8 N -0.74 -7.43 5.20 -60.29 -0.31 -7.74 16 9 C 0.51 7.53 7.83 -10.98 -0.09 7.44 16 10 O -0.53 -10.16 15.98 5.56 0.09 -10.08 16 11 C -0.14 -2.08 5.70 -27.89 -0.16 -2.24 16 12 C -0.09 -1.79 4.44 -26.73 -0.12 -1.91 16 13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 14 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 15 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -28.36 13.96 55.43 0.77 -27.58 16 18 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 22 C 0.01 0.07 5.43 -1.90 -0.01 0.06 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.18 8.00 -51.92 -0.42 -0.24 16 26 H 0.05 0.29 7.73 -51.93 -0.40 -0.11 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.53 7.85 -51.93 -0.41 0.12 16 29 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.37 2.24 7.78 45.56 0.35 2.60 16 31 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.39 2.71 7.27 -40.82 -0.30 2.41 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 37 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 38 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 39 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.45 7.84 -51.93 -0.41 0.04 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -35.32 339.63 -8.00 -43.31 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.57 Total: -0.24 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.64 Total: -9.09 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.87 Total: -40.80 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.37 Total: -15.30 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.32 -8.00 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332915909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.332 kcal (2) G-P(sol) polarization free energy of solvation -35.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds