Wall clock time and date at job start Mon Mar 30 2020 01:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47898 * 111.00675 * 2 1 4 4 C 1.53988 * 107.06464 * 145.84499 * 3 2 1 5 5 C 1.54602 * 105.13655 * 358.77849 * 4 3 2 6 6 O 1.42900 * 110.72762 * 96.57810 * 5 4 3 7 7 C 1.53002 * 110.72056 * 219.68625 * 5 4 3 8 8 N 1.46496 * 109.47045 * 180.02562 * 7 5 4 9 9 C 1.34784 * 120.00155 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99673 * 359.97438 * 9 8 7 11 11 C 1.50696 * 120.00109 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47055 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99933 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99912 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47017 * 89.99937 * 18 16 14 20 20 H 1.48507 * 109.47241 * 209.99826 * 18 16 14 21 21 H 1.48500 * 109.47209 * 329.99791 * 18 16 14 22 22 C 1.48535 * 111.00024 * 117.39565 * 2 1 3 23 23 H 1.08995 * 109.47070 * 59.86905 * 1 2 3 24 24 H 1.08997 * 109.47268 * 179.87901 * 1 2 3 25 25 H 1.09010 * 109.46887 * 299.88001 * 1 2 3 26 26 H 1.09002 * 109.91515 * 26.48755 * 3 2 1 27 27 H 1.09000 * 110.07862 * 265.29406 * 3 2 1 28 28 H 1.09000 * 110.31061 * 239.85955 * 4 3 2 29 29 H 1.08997 * 110.31015 * 117.68548 * 4 3 2 30 30 H 0.96701 * 113.99764 * 182.44702 * 6 5 4 31 31 H 1.09001 * 109.47600 * 59.99469 * 7 5 4 32 32 H 1.09004 * 109.47006 * 299.99690 * 7 5 4 33 33 H 0.97002 * 120.00100 * 359.97438 * 8 7 5 34 34 H 1.09001 * 109.47324 * 59.99162 * 11 9 8 35 35 H 1.09004 * 109.47043 * 299.99530 * 11 9 8 36 36 H 1.09001 * 109.46832 * 59.99966 * 12 11 9 37 37 H 1.08993 * 109.47194 * 299.99487 * 12 11 9 38 38 H 1.09001 * 109.46801 * 300.00272 * 13 12 11 39 39 H 1.09001 * 109.46998 * 59.99868 * 13 12 11 40 40 H 0.97007 * 120.00011 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.66510 * 81.83988 * 22 2 1 42 42 H 1.08994 * 110.67097 * 318.71049 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2984 1.3658 0.8265 5 6 3.4492 -0.0931 1.3153 6 8 4.3208 -0.8277 0.4534 7 6 3.9589 -0.1309 2.7574 8 7 4.0922 -1.5235 3.1919 9 6 4.5279 -1.8025 4.4365 10 8 4.8101 -0.9005 5.1965 11 6 4.6645 -3.2351 4.8836 12 6 5.1743 -3.2729 6.3257 13 6 5.3123 -4.7274 6.7799 14 6 5.8151 -4.7646 8.2000 15 1 6.0156 -3.8430 8.7262 16 6 6.0180 -5.9752 8.8280 17 7 6.4562 -6.0077 10.0675 18 14 5.6704 -7.5692 7.9182 19 1 6.8979 -8.0127 7.2099 20 1 5.2547 -8.6130 8.8893 21 1 4.5821 -7.3491 6.9320 22 6 2.0013 -0.6381 1.2312 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3633 -1.0276 -0.0022 25 1 -0.3633 0.5120 0.8911 26 1 1.2760 2.0561 0.4571 27 1 2.2117 1.6999 -1.0203 28 1 3.2138 2.0429 1.6765 29 1 4.1471 1.6452 0.2022 30 1 4.4195 -1.7589 0.6949 31 1 3.2523 0.3866 3.4063 32 1 4.9301 0.3611 2.8125 33 1 3.8662 -2.2450 2.5841 34 1 5.3714 -3.7524 4.2349 35 1 3.6934 -3.7271 4.8282 36 1 4.4675 -2.7555 6.9745 37 1 6.1454 -2.7810 6.3807 38 1 4.3410 -5.2189 6.7248 39 1 6.0188 -5.2452 6.1310 40 1 6.5993 -6.8594 10.5092 41 1 2.0040 -1.7235 1.1316 42 1 1.4238 -0.3322 2.1035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332915909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:07 Heat of formation + Delta-G solvation = -123.501653 kcal Electronic energy + Delta-G solvation = -20663.433525 eV Core-core repulsion = 17448.637022 eV Total energy + Delta-G solvation = -3214.796503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25388 -40.18625 -37.20558 -36.15169 -35.27333 -34.12535 -32.67539 -30.71162 -29.66049 -27.81934 -25.93665 -24.67836 -22.50821 -21.94562 -21.55762 -21.08690 -19.03930 -18.43053 -17.75303 -17.02727 -16.84485 -16.54856 -16.33040 -15.99163 -15.68058 -15.19887 -14.84227 -14.67221 -14.57680 -14.30718 -13.93105 -13.81616 -13.51116 -13.14961 -13.08130 -12.69474 -12.57960 -12.50526 -12.46602 -12.17931 -11.87311 -11.77984 -11.72079 -11.48261 -11.31624 -11.02791 -10.80427 -10.74117 -10.19203 -9.43657 -8.26873 -6.32606 1.39701 1.43267 1.55241 1.64648 2.10542 2.40128 2.93816 3.08408 3.09716 3.43003 3.52448 3.79570 3.88198 4.14112 4.16573 4.23634 4.28678 4.44363 4.45723 4.55380 4.62810 4.68324 4.74311 4.81068 4.81645 4.94041 4.98175 4.99264 5.00045 5.05585 5.12343 5.33301 5.58227 5.61947 5.69349 5.80023 5.99799 6.31638 6.47383 6.73113 6.76507 7.24849 7.31917 8.90871 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.002941 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.966321 B = 9517.399291 C = 9827.467437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.530 5.530 3 C 0.037 3.963 4 C -0.121 4.121 5 C 0.129 3.871 6 O -0.551 6.551 7 C 0.103 3.897 8 N -0.716 5.716 9 C 0.515 3.485 10 O -0.586 6.586 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.009 4.009 14 C -0.541 4.541 15 H 0.018 0.982 16 C -0.005 4.005 17 N -0.958 5.958 18 Si 0.963 3.037 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.234 1.234 22 C 0.011 3.989 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.387 0.613 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.415 0.585 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.097 0.903 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.808 10.448 -26.674 31.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.254 5.254 3 C -0.091 4.091 4 C -0.159 4.159 5 C 0.087 3.913 6 O -0.358 6.358 7 C -0.021 4.021 8 N -0.371 5.371 9 C 0.303 3.697 10 O -0.466 6.466 11 C -0.170 4.170 12 C -0.121 4.121 13 C -0.047 4.047 14 C -0.579 4.579 15 H 0.037 0.963 16 C -0.201 4.201 17 N -0.599 5.599 18 Si 0.785 3.215 19 H -0.189 1.189 20 H -0.214 1.214 21 H -0.156 1.156 22 C -0.117 4.117 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.236 0.764 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.385 11.301 -26.797 31.610 hybrid contribution -0.190 -0.744 1.371 1.571 sum -12.576 10.557 -25.426 30.267 Atomic orbital electron populations 1.22591 0.86784 1.02834 1.01311 1.64718 1.09053 1.15363 1.36294 1.22896 0.95271 0.89878 1.01058 1.22461 0.98999 0.93475 1.00957 1.22164 0.88667 0.93745 0.86703 1.86608 1.67247 1.26884 1.55064 1.21944 1.01777 0.83618 0.94800 1.45761 1.68161 1.08746 1.14444 1.21179 0.75055 0.92152 0.81270 1.90701 1.51064 1.49925 1.54907 1.21733 1.05633 0.92146 0.97517 1.21052 0.99520 0.97010 0.94479 1.19550 0.97006 0.94291 0.93809 1.21582 1.44188 0.92762 0.99328 0.96344 1.26223 0.94135 1.04019 0.95683 1.70113 1.48091 1.27407 1.14288 0.85478 0.80276 0.76951 0.78795 1.18936 1.21361 1.15646 1.23946 0.94508 1.01241 0.92008 0.90535 0.90729 0.95023 0.92511 0.89872 0.88798 0.89627 0.76365 0.91085 0.91898 0.74745 0.86174 0.86220 0.94582 0.94638 0.95007 0.95184 0.92534 0.88455 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.40 127.69 1.20 1.34 16 2 N -0.53 -7.41 5.55 -909.18 -5.05 -12.46 16 3 C 0.04 0.46 6.70 86.44 0.58 1.04 16 4 C -0.12 -1.59 6.27 31.47 0.20 -1.39 16 5 C 0.13 1.82 1.03 -9.58 -0.01 1.81 16 6 O -0.55 -8.47 13.11 -148.98 -1.95 -10.43 16 7 C 0.10 1.84 4.74 86.38 0.41 2.25 16 8 N -0.72 -12.58 5.20 -463.06 -2.41 -14.98 16 9 C 0.52 14.25 7.83 87.65 0.69 14.94 16 10 O -0.59 -22.70 15.98 -3.03 -0.05 -22.74 16 11 C -0.13 -3.46 5.70 29.85 0.17 -3.29 16 12 C -0.08 -3.35 4.44 30.60 0.14 -3.21 16 13 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 14 C -0.54 -32.36 9.66 25.60 0.25 -32.11 16 15 H 0.02 1.24 7.99 -2.91 -0.02 1.22 16 16 C 0.00 -0.29 5.47 84.65 0.46 0.17 16 17 N -0.96 -61.88 13.96 21.45 0.30 -61.58 16 18 Si 0.96 43.54 27.47 68.60 1.88 45.42 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.23 -9.30 6.54 99.48 0.65 -8.65 16 22 C 0.01 0.14 5.43 86.65 0.47 0.61 16 23 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 25 H 0.03 0.33 8.00 -2.38 -0.02 0.31 16 26 H 0.06 0.60 7.73 -2.39 -0.02 0.58 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.05 7.85 -2.39 -0.02 1.04 16 29 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.39 3.44 7.78 -74.06 -0.58 2.87 16 31 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.41 4.10 7.27 -92.71 -0.67 3.42 16 34 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 37 H 0.03 1.58 8.10 -2.39 -0.02 1.56 16 38 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 39 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 40 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.74 7.84 -2.39 -0.02 0.72 16 Total: -1.00 -80.23 339.63 -2.91 -83.13 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -0.30 Total: 11.79 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.67 Total: -18.15 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -7.16 Total: -89.02 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -2.00 Total: -33.17 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -80.23 -2.91 -83.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332915909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.368 kcal (2) G-P(sol) polarization free energy of solvation -80.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds