Wall clock time and date at job start Mon Mar 30 2020 01:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46898 * 111.00203 * 2 1 4 4 C 1.53000 * 109.47261 * 66.04094 * 3 2 1 5 5 C 1.53002 * 109.47049 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47335 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00027 * 236.04440 * 2 1 3 8 8 C 1.53045 * 109.45692 * 298.95360 * 7 2 1 9 9 C 1.53195 * 109.31159 * 181.38501 * 8 7 2 10 10 N 1.46926 * 108.89290 * 305.29768 * 9 8 7 11 11 C 1.34780 * 120.62785 * 233.68042 * 10 9 8 12 12 O 1.21687 * 119.99972 * 354.72668 * 11 10 9 13 13 C 1.46370 * 120.00021 * 174.72542 * 11 10 9 14 14 H 1.08000 * 119.99819 * 5.77651 * 13 11 10 15 15 C 1.40044 * 120.00272 * 185.76858 * 13 11 10 16 16 N 1.30676 * 119.99928 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00455 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46751 * 90.00162 * 17 15 13 19 19 H 1.48498 * 109.47416 * 210.00405 * 17 15 13 20 20 H 1.48497 * 109.46775 * 330.00339 * 17 15 13 21 21 C 1.47205 * 118.55609 * 53.53450 * 10 9 8 22 22 C 1.53038 * 109.46165 * 59.02024 * 7 2 1 23 23 H 1.08991 * 109.46962 * 183.95804 * 1 2 3 24 24 H 1.09002 * 109.46646 * 303.95938 * 1 2 3 25 25 H 1.09003 * 109.46778 * 63.95502 * 1 2 3 26 26 H 1.08992 * 109.47265 * 186.04668 * 3 2 1 27 27 H 1.08999 * 109.46845 * 306.04447 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00413 * 4 3 2 29 29 H 1.08999 * 109.46903 * 60.00389 * 4 3 2 30 30 H 1.09001 * 109.47260 * 300.00350 * 5 4 3 31 31 H 1.08999 * 109.47060 * 60.00351 * 5 4 3 32 32 H 0.96698 * 114.00757 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.44937 * 178.98969 * 7 2 1 34 34 H 1.09000 * 109.49916 * 61.43478 * 8 7 2 35 35 H 1.08996 * 109.52616 * 301.35389 * 8 7 2 36 36 H 1.09004 * 109.58409 * 65.15166 * 9 8 7 37 37 H 1.08998 * 109.58330 * 185.43566 * 9 8 7 38 38 H 0.97000 * 120.00154 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.53145 * 186.67196 * 21 10 9 40 40 H 1.08998 * 109.67177 * 66.37480 * 21 10 9 41 41 H 1.09002 * 109.49574 * 298.56752 * 22 7 2 42 42 H 1.09000 * 109.49638 * 58.63152 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4861 1.3179 6 8 1.8399 4.1267 2.5493 7 6 1.9955 -0.7660 -1.1375 8 6 1.5260 -2.2190 -1.0347 9 6 2.1051 -3.0225 -2.2034 10 7 1.7393 -2.3607 -3.4632 11 6 1.1178 -3.0459 -4.4435 12 8 0.9403 -4.2443 -4.3299 13 6 0.6564 -2.3483 -5.6447 14 1 0.8952 -1.3049 -5.7885 15 6 -0.0948 -3.0339 -6.6075 16 7 -0.3841 -4.2962 -6.4333 17 14 -0.6831 -2.1439 -8.1409 18 1 0.3402 -2.2698 -9.2096 19 1 -1.9591 -2.7460 -8.6039 20 1 -0.8981 -0.7082 -7.8281 21 6 2.0635 -0.9344 -3.6288 22 6 1.4848 -0.1544 -2.4441 23 1 -0.3633 -1.0251 0.0709 24 1 -0.3633 0.5741 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0797 1.3444 -0.1082 27 1 1.5612 1.9273 -0.8309 28 1 0.5472 2.0845 1.4264 29 1 2.0658 1.5016 2.1491 30 1 3.2636 3.4594 1.2094 31 1 1.7446 4.0417 0.4870 32 1 2.1557 5.0380 2.6188 33 1 3.0849 -0.7345 -1.1232 34 1 0.4373 -2.2532 -1.0738 35 1 1.8698 -2.6472 -0.0931 36 1 3.1907 -3.0653 -2.1150 37 1 1.6972 -4.0332 -2.1896 38 1 -0.9047 -4.7710 -7.1000 39 1 1.6262 -0.5667 -4.5570 40 1 3.1453 -0.8050 -3.6581 41 1 0.3964 -0.2081 -2.4700 42 1 1.7993 0.8875 -2.5055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342894551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:16 Heat of formation + Delta-G solvation = -83.792079 kcal Electronic energy + Delta-G solvation = -21475.288999 eV Core-core repulsion = 18262.214433 eV Total energy + Delta-G solvation = -3213.074566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.44168 -37.66444 -36.92717 -34.89861 -32.59661 -32.28103 -30.66105 -29.80563 -26.88833 -26.44459 -24.78845 -22.71026 -22.54120 -21.06962 -19.85981 -18.63127 -17.57864 -16.65667 -16.13514 -15.94895 -15.51672 -14.71191 -14.55149 -14.18938 -14.09276 -13.88995 -13.77394 -13.24685 -13.15716 -12.56468 -12.38029 -12.02975 -11.69393 -11.57510 -11.51166 -11.36675 -11.17380 -11.09475 -10.97005 -10.78061 -10.69107 -10.51835 -10.25633 -10.22347 -9.96883 -9.88548 -8.87387 -8.17021 -7.58208 -7.22294 -6.21251 -4.66000 3.11707 3.18590 3.21325 3.66879 4.06859 4.26775 4.54715 4.57016 4.72803 4.95832 5.01760 5.06391 5.19194 5.21706 5.35626 5.44729 5.50412 5.56197 5.65384 5.69001 5.75519 5.84145 5.89457 5.96588 6.06102 6.11326 6.13708 6.25060 6.35358 6.47872 6.52493 6.59876 6.75473 7.14025 7.16946 7.32626 7.43973 7.62367 8.12882 8.35091 9.00672 9.43266 10.56572 10.75243 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028312 B = 0.003940 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.748836 B = 7104.082503 C = 7688.983492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.117 4.117 5 C 0.076 3.924 6 O -0.576 6.576 7 C 0.089 3.911 8 C -0.122 4.122 9 C 0.121 3.879 10 N -0.642 5.642 11 C 0.560 3.440 12 O -0.578 6.578 13 C -0.545 4.545 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.127 3.873 22 C -0.166 4.166 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.378 0.622 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.268 0.732 39 H 0.092 0.908 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 14.783 11.560 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.258 5.258 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.002 4.002 6 O -0.381 6.381 7 C -0.019 4.019 8 C -0.161 4.161 9 C -0.003 4.003 10 N -0.381 5.381 11 C 0.366 3.634 12 O -0.461 6.461 13 C -0.582 4.582 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 C 0.002 3.998 22 C -0.206 4.206 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.225 0.775 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.100 13.104 12.097 18.299 hybrid contribution -0.283 1.575 -1.630 2.284 sum 3.817 14.679 10.467 18.428 Atomic orbital electron populations 1.22510 0.87787 1.02667 1.00373 1.62257 1.08063 1.12528 1.42969 1.21959 1.00192 0.89184 0.95842 1.21513 1.02001 0.93364 0.98640 1.22148 0.98411 0.93901 0.85722 1.86478 1.81593 1.31208 1.38825 1.21724 0.99087 0.93726 0.87355 1.21988 1.01372 0.93881 0.98840 1.21113 0.97489 0.97690 0.84057 1.48253 1.64544 1.09127 1.16166 1.18225 0.76508 0.86338 0.82310 1.90590 1.60164 1.15054 1.80261 1.20968 1.35886 0.97451 1.03869 0.91020 1.25726 0.94425 0.94439 0.98615 1.70014 1.28447 1.08693 1.32552 0.86406 0.78512 0.80237 0.81820 1.19696 1.20439 1.18950 1.21352 0.97736 0.82712 0.98018 1.22611 1.02115 0.98954 0.96928 0.90919 0.91732 0.94978 0.90838 0.94470 0.91206 0.90491 0.93604 0.93775 0.77512 0.90339 0.91749 0.91283 0.94110 0.89714 0.92087 0.89005 0.94127 0.91263 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.62 60.07 0.52 0.70 16 2 N -0.54 -6.79 4.75 -234.84 -1.12 -7.91 16 3 C 0.06 0.60 4.40 -3.83 -0.02 0.58 16 4 C -0.12 -1.17 5.51 -26.73 -0.15 -1.32 16 5 C 0.08 0.64 7.05 37.16 0.26 0.90 16 6 O -0.58 -5.20 13.66 -35.23 -0.48 -5.68 16 7 C 0.09 1.27 2.19 -67.67 -0.15 1.12 16 8 C -0.12 -1.96 5.11 -26.61 -0.14 -2.10 16 9 C 0.12 2.38 6.41 -3.71 -0.02 2.36 16 10 N -0.64 -14.55 2.98 -174.21 -0.52 -15.07 16 11 C 0.56 15.95 7.62 -12.99 -0.10 15.85 16 12 O -0.58 -18.76 14.48 5.20 0.08 -18.69 16 13 C -0.55 -15.21 8.88 -35.64 -0.32 -15.52 16 14 H 0.07 1.82 5.66 -52.49 -0.30 1.52 16 15 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 16 N -0.77 -23.00 11.84 55.55 0.66 -22.34 16 17 Si 0.91 19.96 29.56 -169.99 -5.02 14.94 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 C 0.13 2.33 6.36 -3.56 -0.02 2.31 16 22 C -0.17 -2.53 4.66 -26.62 -0.12 -2.65 16 23 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 24 H 0.06 0.72 6.30 -51.93 -0.33 0.39 16 25 H 0.03 0.42 6.31 -51.93 -0.33 0.09 16 26 H 0.07 0.74 8.00 -51.93 -0.42 0.32 16 27 H 0.04 0.40 6.90 -51.93 -0.36 0.04 16 28 H 0.07 0.74 6.47 -51.93 -0.34 0.41 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.38 1.60 9.12 45.56 0.42 2.01 16 33 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 34 H 0.06 1.12 6.50 -51.93 -0.34 0.79 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.88 7.03 -51.93 -0.37 1.52 16 38 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 39 H 0.09 1.79 5.33 -51.93 -0.28 1.52 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.17 6.47 -51.93 -0.34 0.83 16 42 H 0.06 0.78 6.68 -51.93 -0.35 0.44 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -34.51 323.21 -7.61 -42.13 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.73 Total: 3.18 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.35 Total: 4.57 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.98 Total: -45.32 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.41 Total: -24.37 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.51 -7.61 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342894551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.663 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds