Wall clock time and date at job start Mon Mar 30 2020 00:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47262 * 2 1 4 4 C 1.37097 * 120.00132 * 277.77250 * 3 2 1 5 5 H 1.07998 * 119.99988 * 137.89751 * 4 3 2 6 6 C 1.38950 * 119.99838 * 318.16942 * 4 3 2 7 7 N 1.31406 * 120.00358 * 173.12364 * 6 4 3 8 8 Si 1.86805 * 119.99926 * 353.11575 * 6 4 3 9 9 H 1.48506 * 109.46681 * 92.18635 * 8 6 4 10 10 H 1.48500 * 109.47222 * 212.18620 * 8 6 4 11 11 H 1.48500 * 109.47051 * 332.18795 * 8 6 4 12 12 C 1.34783 * 119.99973 * 97.76538 * 3 2 1 13 13 O 1.21294 * 119.99706 * 185.56914 * 12 3 2 14 14 C 1.50700 * 120.00123 * 5.57127 * 12 3 2 15 15 H 1.09000 * 109.46880 * 57.67723 * 14 12 3 16 16 C 1.53004 * 109.46854 * 297.68039 * 14 12 3 17 17 C 1.52997 * 109.46993 * 177.67892 * 14 12 3 18 18 N 1.46908 * 109.46641 * 183.70281 * 17 14 12 19 19 C 1.47013 * 110.99619 * 199.66327 * 18 17 14 20 20 C 1.53101 * 109.25468 * 177.61098 * 19 18 17 21 21 O 1.43007 * 109.26128 * 56.84575 * 20 19 18 22 22 C 1.43014 * 113.73980 * 301.33362 * 21 20 19 23 23 C 1.47013 * 111.00100 * 76.02684 * 18 17 14 24 24 H 1.09002 * 109.47261 * 68.01102 * 1 2 3 25 25 H 1.09008 * 109.47069 * 188.00775 * 1 2 3 26 26 H 1.09004 * 109.47481 * 308.00326 * 1 2 3 27 27 H 1.08999 * 109.47292 * 240.00098 * 2 1 3 28 28 H 1.09004 * 109.47224 * 120.00272 * 2 1 3 29 29 H 0.97000 * 120.00296 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.46861 * 312.77557 * 16 14 12 31 31 H 1.08997 * 109.46910 * 72.77718 * 16 14 12 32 32 H 1.08997 * 109.47031 * 192.77693 * 16 14 12 33 33 H 1.08989 * 109.47507 * 303.70046 * 17 14 12 34 34 H 1.09004 * 109.47060 * 63.70847 * 17 14 12 35 35 H 1.09005 * 109.50626 * 297.53715 * 19 18 17 36 36 H 1.08996 * 109.51043 * 57.67178 * 19 18 17 37 37 H 1.08999 * 109.50696 * 296.90960 * 20 19 18 38 38 H 1.09003 * 109.53935 * 176.80567 * 20 19 18 39 39 H 1.09003 * 109.50123 * 298.72877 * 22 21 20 40 40 H 1.08998 * 109.54385 * 178.63004 * 22 21 20 41 41 H 1.08997 * 109.50572 * 302.32938 * 23 18 17 42 42 H 1.09005 * 109.50325 * 62.45244 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0954 2.0810 -1.1764 5 1 1.7846 3.1147 -1.2111 6 6 2.5682 1.4586 -2.3252 7 7 2.5164 2.0838 -3.4799 8 14 3.2777 -0.2667 -2.2283 9 1 2.2036 -1.2588 -2.4881 10 1 4.3490 -0.4193 -3.2452 11 1 3.8442 -0.4936 -0.8745 12 6 2.3916 1.9639 1.1565 13 8 2.6996 3.1370 1.1727 14 6 2.4265 1.1581 2.4295 15 1 3.0928 0.3051 2.3014 16 6 1.0172 0.6598 2.7563 17 6 2.9356 2.0356 3.5748 18 7 3.0537 1.2271 4.7957 19 6 3.0803 2.0809 5.9923 20 6 3.1437 1.1977 7.2413 21 8 4.2891 0.3454 7.1587 22 6 4.2955 -0.5003 6.0055 23 6 4.2437 0.3655 4.7440 24 1 -0.3634 0.3848 -0.9529 25 1 -0.3634 -1.0177 0.1432 26 1 -0.3634 0.6327 0.8098 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.8461 1.6492 -4.2820 30 1 0.3096 1.4834 2.6614 31 1 0.7436 -0.1361 2.0637 32 1 0.9947 0.2772 3.7767 33 1 3.9118 2.4437 3.3135 34 1 2.2343 2.8522 3.7462 35 1 3.9573 2.7273 5.9587 36 1 2.1781 2.6917 6.0237 37 1 2.2413 0.5896 7.3033 38 1 3.2208 1.8262 8.1286 39 1 3.4265 -1.1578 6.0316 40 1 5.2056 -1.1001 5.9982 41 1 4.1908 -0.2758 3.8642 42 1 5.1393 0.9846 4.6904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442113840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:39 Heat of formation + Delta-G solvation = -51.867936 kcal Electronic energy + Delta-G solvation = -22229.807900 eV Core-core repulsion = 19018.117668 eV Total energy + Delta-G solvation = -3211.690232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.86427 -39.02845 -36.16963 -35.26713 -33.07091 -31.83865 -31.27155 -29.83835 -27.85925 -25.36153 -24.67862 -24.11743 -22.96702 -21.71825 -20.35492 -18.40903 -16.95712 -16.85221 -16.24044 -16.11362 -15.80273 -15.21225 -15.13154 -14.94483 -14.24203 -13.93299 -13.67270 -13.35441 -13.08129 -12.60093 -12.47372 -12.23796 -12.15096 -11.95670 -11.86729 -11.52730 -11.43039 -11.28706 -11.00009 -10.80408 -10.69310 -10.57606 -10.41605 -10.05694 -9.77138 -9.67588 -9.00513 -8.46772 -8.37755 -7.70641 -6.31661 -4.01182 3.03249 3.16784 3.21869 3.61733 3.73309 3.78268 4.14274 4.48496 4.76662 4.89390 4.91759 5.00093 5.03068 5.15750 5.29076 5.32702 5.41383 5.47551 5.48311 5.52602 5.68753 5.69712 5.79941 5.81822 5.88695 5.93780 5.95379 6.08471 6.20641 6.27094 6.37250 6.41680 6.53943 6.83199 6.92866 6.98074 7.02750 7.62456 8.32413 8.53681 8.97348 9.33733 9.78081 10.80305 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029457 B = 0.004939 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.307955 B = 5667.620646 C = 5772.629486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 N -0.470 5.470 4 C -0.310 4.310 5 H 0.103 0.897 6 C 0.056 3.944 7 N -0.877 5.877 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.270 1.270 12 C 0.478 3.522 13 O -0.565 6.565 14 C -0.102 4.102 15 H 0.081 0.919 16 C -0.150 4.150 17 C 0.079 3.921 18 N -0.536 5.536 19 C 0.018 3.982 20 C 0.065 3.935 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.014 3.986 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.273 0.727 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 -8.003 17.174 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.037 4.037 3 N -0.192 5.192 4 C -0.437 4.437 5 H 0.121 0.879 6 C -0.149 4.149 7 N -0.515 5.515 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.195 1.195 12 C 0.265 3.735 13 O -0.446 6.446 14 C -0.125 4.125 15 H 0.099 0.901 16 C -0.207 4.207 17 C -0.049 4.049 18 N -0.261 5.261 19 C -0.110 4.110 20 C -0.012 4.012 21 O -0.307 6.307 22 C -0.012 4.012 23 C -0.115 4.115 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.692 -7.694 17.117 18.779 hybrid contribution 0.851 -0.463 -0.634 1.158 sum 0.158 -8.157 16.483 18.392 Atomic orbital electron populations 1.22259 0.96062 1.00745 1.03401 1.21930 0.94915 0.86239 1.00569 1.43687 1.57088 1.11376 1.07024 1.19046 1.42316 0.98274 0.84089 0.87901 1.25398 0.95642 0.98563 0.95264 1.69641 1.45008 1.38189 0.98634 0.86668 0.78783 0.84182 0.77699 1.20290 1.22061 1.19517 1.20240 0.80156 0.88323 0.84772 1.90554 1.51444 1.16631 1.86005 1.21170 0.99100 0.98682 0.93516 0.90080 1.22143 0.94564 1.01400 1.02567 1.21836 1.01028 0.94478 0.87529 1.62159 1.38673 1.22660 1.02598 1.22771 1.01988 0.95460 0.90812 1.22657 0.88945 0.92516 0.97079 1.87960 1.44139 1.54397 1.44244 1.22657 1.02336 0.92057 0.84121 1.22844 0.91986 0.97182 0.99466 0.91597 0.92857 0.91846 0.92930 0.90982 0.91684 0.92805 0.91183 0.91214 0.93615 0.90120 0.93973 0.89541 0.92319 0.88691 0.92276 0.88658 0.89448 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.92 37.15 0.33 -2.52 16 2 C 0.09 1.71 4.30 -4.05 -0.02 1.70 16 3 N -0.47 -11.31 2.22 -114.82 -0.26 -11.56 16 4 C -0.31 -8.83 9.37 -14.93 -0.14 -8.97 16 5 H 0.10 3.32 7.95 -52.49 -0.42 2.90 16 6 C 0.06 1.56 5.47 -17.47 -0.10 1.47 16 7 N -0.88 -25.89 13.96 55.50 0.77 -25.11 16 8 Si 0.90 21.04 24.60 -169.99 -4.18 16.86 16 9 H -0.28 -6.05 6.92 56.52 0.39 -5.66 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.10 6.73 56.52 0.38 -5.72 16 12 C 0.48 11.02 6.98 -10.98 -0.08 10.95 16 13 O -0.56 -15.25 15.87 5.55 0.09 -15.16 16 14 C -0.10 -1.76 1.97 -91.77 -0.18 -1.94 16 15 H 0.08 1.32 6.20 -51.93 -0.32 1.00 16 16 C -0.15 -2.18 7.60 37.16 0.28 -1.89 16 17 C 0.08 1.25 3.71 -3.82 -0.01 1.24 16 18 N -0.54 -6.87 3.87 -234.31 -0.91 -7.78 16 19 C 0.02 0.20 5.60 -3.71 -0.02 0.18 16 20 C 0.07 0.64 7.01 37.21 0.26 0.90 16 21 O -0.39 -4.56 10.83 -35.23 -0.38 -4.94 16 22 C 0.07 0.67 7.01 37.20 0.26 0.93 16 23 C 0.01 0.16 5.47 -3.72 -0.02 0.14 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.06 1.04 6.07 -51.93 -0.32 0.72 16 27 H 0.05 1.12 2.29 -51.93 -0.12 1.00 16 28 H 0.07 1.21 4.94 -51.93 -0.26 0.96 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.05 0.83 7.76 -51.93 -0.40 0.43 16 31 H 0.07 0.97 3.81 -51.93 -0.20 0.78 16 32 H 0.07 0.90 7.39 -51.93 -0.38 0.52 16 33 H 0.05 0.80 7.87 -51.93 -0.41 0.40 16 34 H 0.08 1.33 7.86 -51.93 -0.41 0.92 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.88 8.02 -51.93 -0.42 0.47 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.02 6.77 -51.93 -0.35 0.67 16 42 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -32.39 315.87 -6.08 -38.47 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.55 Total: 2.27 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 0.57 Total: 2.19 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.39 Total: -44.45 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.29 Total: -20.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.18 Total: 16.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.39 -6.08 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442113840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.396 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds