Wall clock time and date at job start Mon Mar 30 2020 00:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47262 * 2 1 4 4 C 1.37097 * 120.00132 * 277.77250 * 3 2 1 5 5 H 1.07998 * 119.99988 * 137.89751 * 4 3 2 6 6 C 1.38950 * 119.99838 * 318.16942 * 4 3 2 7 7 N 1.31406 * 120.00358 * 173.12364 * 6 4 3 8 8 Si 1.86805 * 119.99926 * 353.11575 * 6 4 3 9 9 H 1.48506 * 109.46681 * 92.18635 * 8 6 4 10 10 H 1.48500 * 109.47222 * 212.18620 * 8 6 4 11 11 H 1.48500 * 109.47051 * 332.18795 * 8 6 4 12 12 C 1.34783 * 119.99973 * 97.76538 * 3 2 1 13 13 O 1.21294 * 119.99706 * 185.56914 * 12 3 2 14 14 C 1.50700 * 120.00123 * 5.57127 * 12 3 2 15 15 H 1.09000 * 109.46880 * 57.67723 * 14 12 3 16 16 C 1.53004 * 109.46854 * 297.68039 * 14 12 3 17 17 C 1.52997 * 109.46993 * 177.67892 * 14 12 3 18 18 N 1.46908 * 109.46641 * 183.70281 * 17 14 12 19 19 C 1.47013 * 110.99619 * 199.66327 * 18 17 14 20 20 C 1.53101 * 109.25468 * 177.61098 * 19 18 17 21 21 O 1.43007 * 109.26128 * 56.84575 * 20 19 18 22 22 C 1.43014 * 113.73980 * 301.33362 * 21 20 19 23 23 C 1.47013 * 111.00100 * 76.02684 * 18 17 14 24 24 H 1.09002 * 109.47261 * 68.01102 * 1 2 3 25 25 H 1.09008 * 109.47069 * 188.00775 * 1 2 3 26 26 H 1.09004 * 109.47481 * 308.00326 * 1 2 3 27 27 H 1.08999 * 109.47292 * 240.00098 * 2 1 3 28 28 H 1.09004 * 109.47224 * 120.00272 * 2 1 3 29 29 H 0.97000 * 120.00296 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.46861 * 312.77557 * 16 14 12 31 31 H 1.08997 * 109.46910 * 72.77718 * 16 14 12 32 32 H 1.08997 * 109.47031 * 192.77693 * 16 14 12 33 33 H 1.08989 * 109.47507 * 303.70046 * 17 14 12 34 34 H 1.09004 * 109.47060 * 63.70847 * 17 14 12 35 35 H 1.09005 * 109.50626 * 297.53715 * 19 18 17 36 36 H 1.08996 * 109.51043 * 57.67178 * 19 18 17 37 37 H 1.08999 * 109.50696 * 296.90960 * 20 19 18 38 38 H 1.09003 * 109.53935 * 176.80567 * 20 19 18 39 39 H 1.09003 * 109.50123 * 298.72877 * 22 21 20 40 40 H 1.08998 * 109.54385 * 178.63004 * 22 21 20 41 41 H 1.08997 * 109.50572 * 302.32938 * 23 18 17 42 42 H 1.09005 * 109.50325 * 62.45244 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0954 2.0810 -1.1764 5 1 1.7846 3.1147 -1.2111 6 6 2.5682 1.4586 -2.3252 7 7 2.5164 2.0838 -3.4799 8 14 3.2777 -0.2667 -2.2283 9 1 2.2036 -1.2588 -2.4881 10 1 4.3490 -0.4193 -3.2452 11 1 3.8442 -0.4936 -0.8745 12 6 2.3916 1.9639 1.1565 13 8 2.6996 3.1370 1.1727 14 6 2.4265 1.1581 2.4295 15 1 3.0928 0.3051 2.3014 16 6 1.0172 0.6598 2.7563 17 6 2.9356 2.0356 3.5748 18 7 3.0537 1.2271 4.7957 19 6 3.0803 2.0809 5.9923 20 6 3.1437 1.1977 7.2413 21 8 4.2891 0.3454 7.1587 22 6 4.2955 -0.5003 6.0055 23 6 4.2437 0.3655 4.7440 24 1 -0.3634 0.3848 -0.9529 25 1 -0.3634 -1.0177 0.1432 26 1 -0.3634 0.6327 0.8098 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.8461 1.6492 -4.2820 30 1 0.3096 1.4834 2.6614 31 1 0.7436 -0.1361 2.0637 32 1 0.9947 0.2772 3.7767 33 1 3.9118 2.4437 3.3135 34 1 2.2343 2.8522 3.7462 35 1 3.9573 2.7273 5.9587 36 1 2.1781 2.6917 6.0237 37 1 2.2413 0.5896 7.3033 38 1 3.2208 1.8262 8.1286 39 1 3.4265 -1.1578 6.0316 40 1 5.2056 -1.1001 5.9982 41 1 4.1908 -0.2758 3.8642 42 1 5.1393 0.9846 4.6904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442113840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:39 Heat of formation + Delta-G solvation = -76.352243 kcal Electronic energy + Delta-G solvation = -22230.869619 eV Core-core repulsion = 19018.117668 eV Total energy + Delta-G solvation = -3212.751951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24991 -40.30037 -37.43734 -36.99355 -34.72358 -33.56448 -32.11047 -31.47393 -28.94213 -27.23423 -25.91446 -24.97488 -24.52802 -23.17117 -21.31670 -20.11172 -18.83937 -18.29180 -17.87775 -17.12448 -16.98619 -16.52177 -16.14623 -15.95191 -15.74546 -15.29119 -15.27270 -14.75191 -14.68202 -14.05983 -13.92388 -13.74097 -13.58814 -13.33037 -13.03690 -12.89904 -12.61388 -12.53398 -12.46979 -12.27616 -11.97704 -11.84361 -11.72676 -11.45240 -11.43115 -10.98786 -10.63805 -10.32584 -9.70074 -9.45050 -8.47195 -6.23068 1.18055 1.28859 1.40455 1.92037 2.16462 2.45642 2.87416 2.95199 3.03695 3.74007 3.81180 3.94952 3.96798 4.05848 4.11377 4.22178 4.27894 4.32247 4.37125 4.43678 4.47446 4.62988 4.70005 4.75258 4.77035 4.85614 4.91801 4.93362 4.95685 5.04808 5.11725 5.13989 5.31181 5.52485 5.58673 5.85824 5.95593 6.02809 6.21518 6.56778 6.91947 7.27965 7.84211 8.69618 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029457 B = 0.004939 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.307955 B = 5667.620646 C = 5772.629486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 N -0.480 5.480 4 C -0.324 4.324 5 H 0.038 0.962 6 C 0.003 3.997 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.242 1.242 10 H -0.297 1.297 11 H -0.251 1.251 12 C 0.468 3.532 13 O -0.618 6.618 14 C -0.089 4.089 15 H 0.102 0.898 16 C -0.140 4.140 17 C 0.089 3.911 18 N -0.526 5.526 19 C 0.014 3.986 20 C 0.068 3.932 21 O -0.406 6.406 22 C 0.068 3.932 23 C 0.009 3.991 24 H 0.036 0.964 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.113 0.887 29 H 0.278 0.722 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.018 0.982 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -12.022 19.591 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.044 4.044 3 N -0.202 5.202 4 C -0.453 4.453 5 H 0.056 0.944 6 C -0.198 4.198 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.167 1.167 10 H -0.225 1.225 11 H -0.175 1.175 12 C 0.258 3.742 13 O -0.503 6.503 14 C -0.111 4.111 15 H 0.120 0.880 16 C -0.197 4.197 17 C -0.040 4.040 18 N -0.251 5.251 19 C -0.114 4.114 20 C -0.009 4.009 21 O -0.325 6.325 22 C -0.008 4.008 23 C -0.119 4.119 24 H 0.055 0.945 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.112 0.888 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.003 -11.737 19.562 22.835 hybrid contribution 0.919 0.941 -1.361 1.893 sum -0.084 -10.796 18.201 21.162 Atomic orbital electron populations 1.22248 0.94069 1.03615 1.02107 1.22266 0.96714 0.83411 1.01995 1.43833 1.57586 1.12988 1.05754 1.18630 1.43365 0.96532 0.86722 0.94380 1.26292 0.95389 1.03953 0.94124 1.69798 1.46219 1.40841 0.99703 0.85561 0.78521 0.78349 0.78416 1.16693 1.22499 1.17496 1.21383 0.78322 0.88138 0.86382 1.90521 1.53324 1.19398 1.87075 1.21112 1.01609 0.98195 0.90216 0.88017 1.22108 0.91941 1.01208 1.04424 1.21615 0.99191 0.94398 0.88785 1.62185 1.39196 1.22119 1.01623 1.22894 1.01902 0.95716 0.90869 1.22765 0.88921 0.92433 0.96742 1.87947 1.45028 1.54799 1.44731 1.22753 1.03878 0.91625 0.82585 1.22962 0.90852 0.97081 1.00994 0.94456 0.88142 0.91372 0.93747 0.86935 0.91237 0.94077 0.89793 0.88618 0.96334 0.91320 0.95255 0.88661 0.91174 0.86784 0.91001 0.86924 0.88769 0.95367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 8.92 71.98 0.64 -4.42 16 2 C 0.08 2.83 4.30 86.38 0.37 3.20 16 3 N -0.48 -23.16 2.22 -635.55 -1.41 -24.58 16 4 C -0.32 -19.39 9.37 84.04 0.79 -18.60 16 5 H 0.04 2.70 7.95 -2.91 -0.02 2.68 16 6 C 0.00 0.15 5.47 84.93 0.46 0.62 16 7 N -0.93 -56.98 13.96 21.66 0.30 -56.67 16 8 Si 0.97 42.50 24.60 68.60 1.69 44.19 16 9 H -0.24 -9.31 6.92 99.48 0.69 -8.63 16 10 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.25 -10.16 6.73 99.48 0.67 -9.49 16 12 C 0.47 21.85 6.98 87.66 0.61 22.47 16 13 O -0.62 -35.19 15.87 -3.07 -0.05 -35.24 16 14 C -0.09 -2.89 1.97 -11.54 -0.02 -2.91 16 15 H 0.10 2.91 6.20 -2.39 -0.01 2.90 16 16 C -0.14 -3.57 7.60 71.98 0.55 -3.02 16 17 C 0.09 2.75 3.71 86.30 0.32 3.07 16 18 N -0.53 -12.30 3.87 -895.22 -3.46 -15.77 16 19 C 0.01 0.29 5.60 86.32 0.48 0.78 16 20 C 0.07 1.13 7.01 72.02 0.50 1.64 16 21 O -0.41 -8.33 10.83 -148.98 -1.61 -9.94 16 22 C 0.07 1.16 7.01 72.01 0.50 1.67 16 23 C 0.01 0.20 5.47 86.31 0.47 0.67 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.07 2.05 6.07 -2.39 -0.01 2.03 16 27 H 0.04 1.72 2.29 -2.39 -0.01 1.71 16 28 H 0.11 3.18 4.94 -2.39 -0.01 3.17 16 29 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.04 1.17 7.76 -2.39 -0.02 1.15 16 31 H 0.08 1.91 3.81 -2.39 -0.01 1.90 16 32 H 0.10 2.01 7.39 -2.39 -0.02 1.99 16 33 H 0.02 0.66 7.87 -2.39 -0.02 0.65 16 34 H 0.07 2.27 7.86 -2.39 -0.02 2.26 16 35 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.10 1.78 8.02 -2.39 -0.02 1.76 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.86 6.77 -2.39 -0.02 1.85 16 42 H 0.03 0.68 8.13 -2.38 -0.02 0.67 16 Total: -1.00 -76.75 315.87 2.09 -74.65 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.95 Total: 18.21 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.69 Total: 5.15 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -4.57 Total: -97.02 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.66 Total: -45.18 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.69 Total: 44.19 kcal Total: -76.75 2.09 -74.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442113840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.698 kcal (2) G-P(sol) polarization free energy of solvation -76.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds