Wall clock time and date at job start Mon Mar 30 2020 01:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47052 * 2 1 4 4 C 1.42904 * 113.99940 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46641 * 30.00094 * 4 3 2 6 6 C 1.52995 * 109.46923 * 270.00252 * 4 3 2 7 7 C 1.50698 * 109.46886 * 149.99871 * 4 3 2 8 8 O 1.21283 * 120.00472 * 5.00421 * 7 4 3 9 9 N 1.34777 * 119.99538 * 184.99758 * 7 4 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 H 1.09010 * 110.64370 * 323.58745 * 10 9 7 12 12 C 1.55160 * 110.72312 * 86.73245 * 10 9 7 13 13 C 1.54910 * 101.58117 * 153.86275 * 12 10 9 14 14 N 1.47418 * 104.83362 * 322.99252 * 13 12 10 15 15 C 1.36942 * 125.64561 * 204.09209 * 14 13 12 16 16 H 1.07998 * 119.99877 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00087 * 0.02807 * 15 14 13 18 18 N 1.31628 * 120.00103 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00164 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46925 * 89.99928 * 19 17 15 21 21 H 1.48498 * 109.47430 * 209.99727 * 19 17 15 22 22 H 1.48503 * 109.47331 * 329.99945 * 19 17 15 23 23 C 1.47023 * 108.70534 * 24.12862 * 14 13 12 24 24 H 1.09002 * 109.87850 * 239.52273 * 23 14 13 25 25 C 1.52998 * 109.88177 * 118.35864 * 23 14 13 26 26 H 1.08996 * 109.47419 * 300.00257 * 1 2 3 27 27 H 1.09005 * 109.47055 * 60.00316 * 1 2 3 28 28 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46891 * 240.00159 * 2 1 3 30 30 H 1.09000 * 109.47127 * 120.00160 * 2 1 3 31 31 H 1.08996 * 109.47333 * 299.99418 * 6 4 3 32 32 H 1.08995 * 109.47477 * 60.00306 * 6 4 3 33 33 H 1.09004 * 109.46593 * 180.02562 * 6 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 35 35 H 1.09002 * 111.00017 * 271.94108 * 12 10 9 36 36 H 1.08993 * 110.99869 * 35.75063 * 12 10 9 37 37 H 1.09002 * 110.36538 * 81.83755 * 13 12 10 38 38 H 1.08998 * 110.36029 * 204.03922 * 13 12 10 39 39 H 0.96993 * 120.00145 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46908 * 302.19519 * 25 23 14 41 41 H 1.09001 * 109.47094 * 62.19154 * 25 23 14 42 42 H 1.08992 * 109.47422 * 182.19301 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5129 6 6 3.9387 1.5005 1.4433 7 6 3.8348 2.7263 -0.7099 8 8 2.9865 3.5047 -1.0913 9 7 5.1387 2.9937 -0.9213 10 6 5.5311 4.2217 -1.6172 11 1 4.8178 4.4610 -2.4061 12 6 5.6608 5.4016 -0.6180 13 6 6.6778 6.3154 -1.3462 14 7 7.6273 5.3876 -1.9873 15 6 8.9175 5.6827 -2.3386 16 1 9.5354 4.9303 -2.8060 17 6 9.4312 6.9488 -2.0940 18 7 8.6780 7.8660 -1.5248 19 14 11.1914 7.3512 -2.5726 20 1 11.2186 7.8795 -3.9601 21 1 11.7359 8.3732 -1.6430 22 1 12.0191 6.1206 -2.4951 23 6 6.9592 4.0934 -2.1878 24 1 7.5013 3.3104 -1.6575 25 6 6.8956 3.7665 -3.6811 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.5061 2.3591 1.9568 32 1 3.6466 0.5847 1.9571 33 1 5.0253 1.5871 1.4436 34 1 5.8172 2.3711 -0.6165 35 1 4.7048 5.9084 -0.4858 36 1 6.0558 5.0612 0.3391 37 1 6.1727 6.9212 -2.0984 38 1 7.1942 6.9544 -0.6298 39 1 9.0368 8.7508 -1.3542 40 1 6.3692 4.5641 -4.2055 41 1 7.9073 3.6774 -4.0770 42 1 6.3651 2.8253 -3.8248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479698072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:23 Heat of formation + Delta-G solvation = -62.266426 kcal Electronic energy + Delta-G solvation = -21462.380175 eV Core-core repulsion = 18250.239031 eV Total energy + Delta-G solvation = -3212.141144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95918 -38.24399 -37.16159 -34.05734 -32.72375 -31.82299 -30.41642 -30.18822 -28.51496 -25.35244 -24.03239 -23.83398 -22.82938 -20.61256 -20.09091 -19.58685 -17.20211 -17.06815 -16.73652 -15.91031 -15.66782 -14.86686 -14.70401 -14.18746 -13.93653 -13.50831 -13.35937 -13.29757 -12.79328 -12.69354 -12.41802 -12.18556 -12.10928 -11.95922 -11.57881 -11.56160 -11.24481 -11.13265 -10.87003 -10.82994 -10.51082 -10.38887 -10.09701 -10.00503 -9.76435 -9.59411 -9.31982 -8.68463 -8.59610 -6.88171 -5.65926 -3.09084 2.78288 2.92216 3.39031 3.43789 3.45949 3.84676 4.47163 4.61716 4.74903 4.80985 4.90469 5.01554 5.10539 5.25232 5.30570 5.41793 5.50255 5.52606 5.54912 5.64423 5.67307 5.82624 5.90064 5.93026 6.11866 6.25620 6.31209 6.35680 6.54790 6.60396 6.73721 6.86020 6.92244 7.13446 7.52511 7.61876 7.74100 7.85347 8.34178 8.44232 9.19959 9.80845 10.44810 11.37332 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.045164 B = 0.003654 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.815598 B = 7660.911418 C = 7764.269253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.083 0.917 6 C -0.170 4.170 7 C 0.512 3.488 8 O -0.522 6.522 9 N -0.714 5.714 10 C 0.137 3.863 11 H 0.091 0.909 12 C -0.153 4.153 13 C 0.153 3.847 14 N -0.595 5.595 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.156 3.844 24 H 0.036 0.964 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.014 0.986 38 H 0.109 0.891 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 -16.281 4.464 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.010 3.990 5 H 0.101 0.899 6 C -0.228 4.228 7 C 0.296 3.704 8 O -0.396 6.396 9 N -0.367 5.367 10 C 0.032 3.968 11 H 0.109 0.891 12 C -0.192 4.192 13 C 0.028 3.972 14 N -0.320 5.320 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.048 3.952 24 H 0.053 0.947 25 C -0.215 4.215 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.574 -15.354 4.197 19.110 hybrid contribution 1.406 -0.342 -0.194 1.460 sum -9.167 -15.696 4.003 18.613 Atomic orbital electron populations 1.21726 0.93511 1.02080 1.03474 1.22578 0.95933 0.83766 0.99966 1.88071 1.18556 1.26035 1.94936 1.21897 0.83558 0.96784 0.96779 0.89871 1.22224 1.01890 1.03578 0.95064 1.20271 0.82872 0.87450 0.79784 1.90715 1.50200 1.48812 1.49914 1.46011 1.06603 1.24454 1.59585 1.22155 0.96482 0.83207 0.94931 0.89084 1.23395 1.00369 0.97131 0.98333 1.21945 0.88166 0.91152 0.95948 1.44494 1.09998 1.07007 1.70543 1.19017 0.86332 0.96458 1.33086 0.90468 1.24794 0.98448 0.96053 1.01299 1.69801 1.34832 1.04186 1.48058 0.86081 0.83921 0.77770 0.77746 1.21648 1.21676 1.20733 1.20982 0.89952 0.90620 0.93679 0.94655 1.22245 1.01332 0.99414 0.98510 0.91751 0.91630 0.91134 0.93316 0.93307 0.90970 0.91466 0.90749 0.76907 0.91948 0.91992 0.96774 0.87342 0.93678 0.92888 0.92703 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.49 6.47 37.16 0.24 0.73 16 3 O -0.36 -4.74 9.53 -55.09 -0.52 -5.27 16 4 C 0.07 0.83 3.13 -27.89 -0.09 0.74 16 5 H 0.08 0.74 7.79 -51.93 -0.40 0.33 16 6 C -0.17 -1.60 9.48 37.15 0.35 -1.25 16 7 C 0.51 7.99 7.18 -10.99 -0.08 7.91 16 8 O -0.52 -10.59 16.23 -14.30 -0.23 -10.82 16 9 N -0.71 -10.49 5.17 -52.03 -0.27 -10.76 16 10 C 0.14 2.51 2.76 -66.09 -0.18 2.33 16 11 H 0.09 1.82 7.40 -51.92 -0.38 1.43 16 12 C -0.15 -3.08 6.77 -24.58 -0.17 -3.24 16 13 C 0.15 3.74 5.89 -2.53 -0.01 3.73 16 14 N -0.60 -14.77 3.13 -162.58 -0.51 -15.28 16 15 C -0.22 -5.96 9.89 -15.06 -0.15 -6.11 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 19 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C 0.16 3.10 3.48 -66.95 -0.23 2.87 16 24 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 25 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.05 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 33 H 0.07 0.61 7.92 -51.93 -0.41 0.19 16 34 H 0.40 4.66 8.09 -40.82 -0.33 4.33 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 2.97 5.88 -51.93 -0.31 2.66 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -32.55 341.00 -7.79 -40.35 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.24 Total: 1.96 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 0.31 Total: 3.96 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.22 Total: -52.10 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.76 Total: -16.09 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.55 -7.79 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479698072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.919 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds