Wall clock time and date at job start Mon Mar 30 2020 01:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47052 * 2 1 4 4 C 1.42904 * 113.99940 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46641 * 30.00094 * 4 3 2 6 6 C 1.52995 * 109.46923 * 270.00252 * 4 3 2 7 7 C 1.50698 * 109.46886 * 149.99871 * 4 3 2 8 8 O 1.21283 * 120.00472 * 5.00421 * 7 4 3 9 9 N 1.34777 * 119.99538 * 184.99758 * 7 4 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 H 1.09010 * 110.64370 * 323.58745 * 10 9 7 12 12 C 1.55160 * 110.72312 * 86.73245 * 10 9 7 13 13 C 1.54910 * 101.58117 * 153.86275 * 12 10 9 14 14 N 1.47418 * 104.83362 * 322.99252 * 13 12 10 15 15 C 1.36942 * 125.64561 * 204.09209 * 14 13 12 16 16 H 1.07998 * 119.99877 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00087 * 0.02807 * 15 14 13 18 18 N 1.31628 * 120.00103 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00164 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46925 * 89.99928 * 19 17 15 21 21 H 1.48498 * 109.47430 * 209.99727 * 19 17 15 22 22 H 1.48503 * 109.47331 * 329.99945 * 19 17 15 23 23 C 1.47023 * 108.70534 * 24.12862 * 14 13 12 24 24 H 1.09002 * 109.87850 * 239.52273 * 23 14 13 25 25 C 1.52998 * 109.88177 * 118.35864 * 23 14 13 26 26 H 1.08996 * 109.47419 * 300.00257 * 1 2 3 27 27 H 1.09005 * 109.47055 * 60.00316 * 1 2 3 28 28 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46891 * 240.00159 * 2 1 3 30 30 H 1.09000 * 109.47127 * 120.00160 * 2 1 3 31 31 H 1.08996 * 109.47333 * 299.99418 * 6 4 3 32 32 H 1.08995 * 109.47477 * 60.00306 * 6 4 3 33 33 H 1.09004 * 109.46593 * 180.02562 * 6 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 35 35 H 1.09002 * 111.00017 * 271.94108 * 12 10 9 36 36 H 1.08993 * 110.99869 * 35.75063 * 12 10 9 37 37 H 1.09002 * 110.36538 * 81.83755 * 13 12 10 38 38 H 1.08998 * 110.36029 * 204.03922 * 13 12 10 39 39 H 0.96993 * 120.00145 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46908 * 302.19519 * 25 23 14 41 41 H 1.09001 * 109.47094 * 62.19154 * 25 23 14 42 42 H 1.08992 * 109.47422 * 182.19301 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5129 6 6 3.9387 1.5005 1.4433 7 6 3.8348 2.7263 -0.7099 8 8 2.9865 3.5047 -1.0913 9 7 5.1387 2.9937 -0.9213 10 6 5.5311 4.2217 -1.6172 11 1 4.8178 4.4610 -2.4061 12 6 5.6608 5.4016 -0.6180 13 6 6.6778 6.3154 -1.3462 14 7 7.6273 5.3876 -1.9873 15 6 8.9175 5.6827 -2.3386 16 1 9.5354 4.9303 -2.8060 17 6 9.4312 6.9488 -2.0940 18 7 8.6780 7.8660 -1.5248 19 14 11.1914 7.3512 -2.5726 20 1 11.2186 7.8795 -3.9601 21 1 11.7359 8.3732 -1.6430 22 1 12.0191 6.1206 -2.4951 23 6 6.9592 4.0934 -2.1878 24 1 7.5013 3.3104 -1.6575 25 6 6.8956 3.7665 -3.6811 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.5061 2.3591 1.9568 32 1 3.6466 0.5847 1.9571 33 1 5.0253 1.5871 1.4436 34 1 5.8172 2.3711 -0.6165 35 1 4.7048 5.9084 -0.4858 36 1 6.0558 5.0612 0.3391 37 1 6.1727 6.9212 -2.0984 38 1 7.1942 6.9544 -0.6298 39 1 9.0368 8.7508 -1.3542 40 1 6.3692 4.5641 -4.2055 41 1 7.9073 3.6774 -4.0770 42 1 6.3651 2.8253 -3.8248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479698072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:23 Heat of formation + Delta-G solvation = -83.930683 kcal Electronic energy + Delta-G solvation = -21463.319608 eV Core-core repulsion = 18250.239031 eV Total energy + Delta-G solvation = -3213.080577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21143 -39.55611 -38.45892 -35.63237 -34.09463 -33.08034 -32.05831 -31.14030 -30.21464 -26.81302 -25.87718 -24.98644 -23.56000 -22.23298 -21.56059 -21.14384 -18.71484 -18.24245 -18.09850 -17.20077 -16.70548 -16.48973 -15.94381 -15.73867 -15.57089 -15.02349 -14.44136 -14.22860 -14.14005 -14.00540 -13.70179 -13.35930 -13.23632 -13.17331 -12.93024 -12.85132 -12.75509 -12.60612 -12.29752 -12.20798 -12.10845 -11.98525 -11.94672 -11.57028 -11.45854 -10.94580 -10.72880 -10.43000 -10.04247 -8.89763 -7.73957 -5.19331 1.49169 1.50866 1.58225 1.59288 1.83882 2.52015 2.94714 3.36732 3.53209 3.74458 3.84679 3.94112 3.94814 4.06550 4.20201 4.23143 4.35895 4.49799 4.51624 4.61990 4.63334 4.67357 4.79580 4.82623 4.91293 4.94508 5.04382 5.05109 5.12572 5.22892 5.29117 5.36114 5.50655 5.59690 5.61559 5.80324 6.16185 6.30708 6.59558 7.11556 7.25407 7.79440 8.43222 9.28158 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.045164 B = 0.003654 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.815598 B = 7660.911418 C = 7764.269253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.394 6.394 4 C 0.077 3.923 5 H 0.120 0.880 6 C -0.165 4.165 7 C 0.509 3.491 8 O -0.575 6.575 9 N -0.699 5.699 10 C 0.153 3.847 11 H 0.074 0.926 12 C -0.138 4.138 13 C 0.158 3.842 14 N -0.614 5.614 15 C -0.226 4.226 16 H 0.088 0.912 17 C -0.070 4.070 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.291 1.291 21 H -0.297 1.297 22 H -0.265 1.265 23 C 0.152 3.848 24 H 0.058 0.942 25 C -0.147 4.147 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.416 0.584 35 H 0.059 0.941 36 H 0.072 0.928 37 H -0.018 1.018 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.032 0.968 41 H 0.049 0.951 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.394 -19.637 4.884 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.313 6.313 4 C 0.016 3.984 5 H 0.137 0.863 6 C -0.223 4.223 7 C 0.296 3.704 8 O -0.454 6.454 9 N -0.352 5.352 10 C 0.047 3.953 11 H 0.092 0.908 12 C -0.178 4.178 13 C 0.033 3.967 14 N -0.339 5.339 15 C -0.354 4.354 16 H 0.105 0.895 17 C -0.263 4.263 18 N -0.602 5.602 19 Si 0.808 3.192 20 H -0.218 1.218 21 H -0.224 1.224 22 H -0.190 1.190 23 C 0.046 3.954 24 H 0.076 0.924 25 C -0.207 4.207 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.000 1.000 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.979 -18.790 4.623 21.772 hybrid contribution 1.154 0.649 -0.337 1.366 sum -8.825 -18.141 4.287 20.624 Atomic orbital electron populations 1.21775 0.93331 1.03445 1.02328 1.22845 0.96216 0.82229 1.01643 1.88040 1.19420 1.28711 1.95175 1.21971 0.83450 0.95219 0.97778 0.86256 1.22232 1.02682 1.03969 0.93403 1.21160 0.82171 0.88329 0.78787 1.90697 1.51614 1.50920 1.52135 1.45766 1.07229 1.23343 1.58888 1.21707 0.95383 0.84180 0.94042 0.90769 1.23188 0.98827 0.97108 0.98696 1.21647 0.88724 0.91658 0.94695 1.44733 1.09761 1.08762 1.70652 1.19411 0.87363 0.96629 1.32037 0.89464 1.25632 1.02280 0.96258 1.02086 1.70053 1.36373 1.04188 1.49628 0.85060 0.79680 0.77706 0.76771 1.21844 1.22367 1.18969 1.21194 0.90323 0.88906 0.95014 0.92439 1.22136 1.01261 1.00430 0.96843 0.92439 0.93256 0.88494 0.92106 0.90968 0.93130 0.88893 0.89124 0.74638 0.92189 0.90914 0.99992 0.90434 0.94486 0.94841 0.93164 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.05 0.71 6.47 71.98 0.47 1.18 16 3 O -0.39 -9.71 9.53 -129.99 -1.24 -10.95 16 4 C 0.08 1.55 3.13 29.85 0.09 1.65 16 5 H 0.12 1.55 7.79 -2.39 -0.02 1.53 16 6 C -0.17 -2.56 9.48 71.98 0.68 -1.88 16 7 C 0.51 15.02 7.18 87.66 0.63 15.65 16 8 O -0.58 -23.35 16.23 15.95 0.26 -23.09 16 9 N -0.70 -18.84 5.17 -436.90 -2.26 -21.10 16 10 C 0.15 5.47 2.76 46.18 0.13 5.60 16 11 H 0.07 2.97 7.40 -2.38 -0.02 2.95 16 12 C -0.14 -5.62 6.77 31.99 0.22 -5.40 16 13 C 0.16 8.04 5.89 86.86 0.51 8.55 16 14 N -0.61 -30.55 3.13 -668.27 -2.09 -32.64 16 15 C -0.23 -12.15 9.89 84.03 0.83 -11.32 16 16 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 17 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 18 N -0.95 -56.88 10.09 21.65 0.22 -56.66 16 19 Si 0.98 45.06 29.55 68.60 2.03 47.09 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 C 0.15 5.82 3.48 45.34 0.16 5.98 16 24 H 0.06 1.99 7.69 -2.39 -0.02 1.98 16 25 C -0.15 -5.18 9.14 71.98 0.66 -4.52 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.78 8.09 -2.39 -0.02 0.76 16 30 H 0.07 0.77 7.87 -2.39 -0.02 0.75 16 31 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.99 7.87 -2.39 -0.02 0.97 16 33 H 0.09 1.10 7.92 -2.38 -0.02 1.08 16 34 H 0.42 8.15 8.09 -92.71 -0.75 7.40 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 37 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.08 4.44 5.88 -2.39 -0.01 4.43 16 39 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.05 1.80 8.04 -2.39 -0.02 1.78 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -73.42 341.00 2.74 -70.68 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.24 Total: 16.10 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 5.58 Total: 10.56 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -4.13 Total: -110.40 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.98 Total: -34.04 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.42 2.74 -70.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479698072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.250 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds