Wall clock time and date at job start Mon Mar 30 2020 01:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99740 * 2 1 4 4 H 1.07995 * 120.00292 * 322.03513 * 3 2 1 5 5 C 1.38813 * 119.99546 * 142.03821 * 3 2 1 6 6 N 1.31625 * 119.99726 * 157.02147 * 5 3 2 7 7 Si 1.86796 * 120.00294 * 337.01589 * 5 3 2 8 8 H 1.48504 * 109.47230 * 95.68617 * 7 5 3 9 9 H 1.48502 * 109.47304 * 215.67964 * 7 5 3 10 10 H 1.48498 * 109.47250 * 335.68281 * 7 5 3 11 11 C 1.46499 * 120.00250 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47098 * 89.99978 * 11 2 1 13 13 C 1.53000 * 109.47043 * 180.02562 * 12 11 2 14 14 N 1.46495 * 109.47433 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00782 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99614 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00379 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.47030 * 179.97438 * 17 15 14 19 19 H 1.09006 * 110.43547 * 303.90772 * 18 17 15 20 20 C 1.54815 * 110.48818 * 181.22127 * 18 17 15 21 21 C 1.54996 * 102.09207 * 220.44094 * 20 18 17 22 22 O 1.44375 * 103.48871 * 37.02485 * 21 20 18 23 23 C 1.43749 * 106.97795 * 319.93589 * 22 21 20 24 24 H 1.08996 * 109.46839 * 265.64917 * 1 2 3 25 25 H 1.08994 * 109.46694 * 25.65039 * 1 2 3 26 26 H 1.08995 * 109.47014 * 145.65158 * 1 2 3 27 27 H 0.97004 * 119.99720 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46545 * 330.00269 * 11 2 1 29 29 H 1.08996 * 109.47656 * 210.00348 * 11 2 1 30 30 H 1.08993 * 109.47059 * 60.00290 * 12 11 2 31 31 H 1.09002 * 109.46806 * 299.99845 * 12 11 2 32 32 H 1.08996 * 109.47416 * 300.00189 * 13 12 11 33 33 H 1.09005 * 109.47437 * 59.99673 * 13 12 11 34 34 H 0.97006 * 119.99389 * 359.97438 * 14 13 12 35 35 H 1.09003 * 109.47406 * 299.99693 * 17 15 14 36 36 H 1.09000 * 109.47380 * 60.00038 * 17 15 14 37 37 H 1.08995 * 110.91034 * 338.64054 * 20 18 17 38 38 H 1.09000 * 110.90694 * 102.24384 * 20 18 17 39 39 H 1.09002 * 110.61898 * 278.52279 * 21 20 18 40 40 H 1.09005 * 110.61741 * 155.52459 * 21 20 18 41 41 H 1.08997 * 109.87312 * 267.09335 * 23 22 21 42 42 H 1.08994 * 110.00075 * 146.00754 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7811 2.0223 -0.5753 5 6 3.3175 1.3131 0.7395 6 7 4.2044 2.2305 0.4165 7 14 3.6304 0.1824 2.1931 8 1 4.4681 -0.9638 1.7574 9 1 4.3369 0.9337 3.2616 10 1 2.3351 -0.3216 2.7160 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2171 -3.0363 -1.4411 14 7 3.4608 -3.4602 -2.8221 15 6 4.1223 -4.6083 -3.0679 16 8 4.5156 -5.2909 -2.1458 17 6 4.3724 -5.0446 -4.4885 18 6 5.1371 -6.3698 -4.4879 19 1 6.0619 -6.2754 -3.9187 20 6 5.4337 -6.8249 -5.9376 21 6 5.1773 -8.3515 -5.8576 22 8 4.0518 -8.4573 -4.9596 23 6 4.2608 -7.4979 -3.9097 24 1 -0.3633 -0.0780 1.0247 25 1 -0.3632 0.9264 -0.4448 26 1 -0.3633 -0.8484 -0.5798 27 1 5.0207 2.3191 0.9331 28 1 1.6084 -2.0281 0.5147 29 1 3.1500 -1.1382 0.5144 30 1 3.0416 -0.9516 -1.9559 31 1 1.5001 -1.8416 -1.9555 32 1 4.1695 -2.9062 -0.9272 33 1 2.6277 -3.7956 -0.9270 34 1 3.1453 -2.9147 -3.5596 35 1 3.4197 -5.1747 -5.0018 36 1 4.9618 -4.2858 -5.0032 37 1 4.7491 -6.3519 -6.6416 38 1 6.4697 -6.6180 -6.2059 39 1 6.0461 -8.8656 -5.4464 40 1 4.9235 -8.7500 -6.8398 41 1 4.7716 -7.9714 -3.0713 42 1 3.3045 -7.0922 -3.5797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479764089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:54 Heat of formation + Delta-G solvation = -71.924855 kcal Electronic energy + Delta-G solvation = -20722.645040 eV Core-core repulsion = 17510.085075 eV Total energy + Delta-G solvation = -3212.559965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.25825 -38.97181 -36.53608 -34.80329 -33.69635 -31.86100 -30.95584 -30.04205 -27.46832 -26.26786 -25.03194 -23.00883 -21.86732 -21.10853 -20.75780 -19.95786 -17.16159 -16.91101 -16.69818 -16.22003 -15.74582 -15.57379 -15.18868 -15.03302 -14.31885 -14.07613 -13.54520 -13.27486 -13.16751 -13.06206 -12.77112 -12.48314 -12.15831 -11.90769 -11.73237 -11.51628 -11.36732 -11.21226 -11.18830 -10.97528 -10.92857 -10.54633 -10.42614 -9.91920 -9.82793 -9.73001 -9.55563 -8.95446 -8.53922 -6.85339 -6.03864 -3.45078 2.64636 3.21160 3.30312 3.45916 3.51639 3.73203 4.20054 4.40418 4.49974 4.60192 4.75129 4.91061 4.93335 5.00900 5.13288 5.29266 5.32252 5.40062 5.41869 5.46363 5.55612 5.59261 5.64218 5.79561 5.82254 5.89894 6.02672 6.14142 6.25538 6.31083 6.48641 6.61244 6.66728 6.68783 6.73727 6.89870 7.55545 8.02100 8.24662 8.34002 8.95166 9.67558 10.08955 11.11695 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.003245 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.640771 B = 8627.757738 C = 8809.293324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.613 5.613 3 C -0.272 4.272 4 H 0.078 0.922 5 C 0.036 3.964 6 N -0.899 5.899 7 Si 0.876 3.124 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.142 3.858 12 C -0.146 4.146 13 C 0.117 3.883 14 N -0.725 5.725 15 C 0.506 3.494 16 O -0.544 6.544 17 C -0.134 4.134 18 C -0.106 4.106 19 H 0.092 0.908 20 C -0.153 4.153 21 C 0.046 3.954 22 O -0.384 6.384 23 C 0.059 3.941 24 H 0.007 0.993 25 H 0.045 0.955 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.401 0.599 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 -17.051 -13.213 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.337 5.337 3 C -0.401 4.401 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.540 5.540 7 Si 0.706 3.294 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.016 3.984 12 C -0.186 4.186 13 C -0.007 4.007 14 N -0.376 5.376 15 C 0.292 3.708 16 O -0.422 6.422 17 C -0.174 4.174 18 C -0.125 4.125 19 H 0.110 0.890 20 C -0.190 4.190 21 C -0.031 4.031 22 O -0.303 6.303 23 C -0.017 4.017 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.843 -17.555 -12.488 21.560 hybrid contribution 0.379 0.024 0.555 0.673 sum 1.223 -17.531 -11.932 21.242 Atomic orbital electron populations 1.21081 0.84564 0.99010 0.97436 1.44051 1.00812 1.01987 1.86822 1.18786 1.06100 0.90855 1.24337 0.90431 1.25483 0.96827 0.96460 0.97673 1.69883 1.08445 1.36202 1.39427 0.86942 0.78052 0.80053 0.84341 1.21179 1.22795 1.19440 1.21034 0.96561 0.87818 0.93020 1.22381 0.99571 0.94615 1.02029 1.21473 1.00584 0.96801 0.81806 1.46152 1.57925 1.23783 1.09783 1.20660 0.77749 0.80939 0.91451 1.90703 1.51009 1.53985 1.46470 1.21768 1.02615 0.98330 0.94675 1.22300 0.99882 0.94112 0.96184 0.88990 1.23236 1.02800 0.96471 0.96516 1.23527 0.89753 0.95342 0.94468 1.88870 1.43514 1.59601 1.38319 1.23183 1.00172 0.88352 0.90027 0.97529 0.93641 0.95491 0.92670 0.94146 0.92710 0.90556 0.92245 0.91601 0.91899 0.76519 0.88552 0.88443 0.90173 0.89984 0.92229 0.89075 0.91843 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.45 10.70 59.85 0.64 3.09 16 2 N -0.61 -14.47 2.47 -181.12 -0.45 -14.91 16 3 C -0.27 -7.54 9.88 -15.06 -0.15 -7.69 16 4 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 5 C 0.04 1.04 5.29 -17.43 -0.09 0.95 16 6 N -0.90 -27.15 13.97 55.49 0.78 -26.38 16 7 Si 0.88 22.26 25.10 -169.99 -4.27 17.99 16 8 H -0.28 -7.00 6.68 56.52 0.38 -6.62 16 9 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.14 2.99 4.53 -4.04 -0.02 2.97 16 12 C -0.15 -2.52 5.65 -26.73 -0.15 -2.68 16 13 C 0.12 1.84 5.67 -4.04 -0.02 1.81 16 14 N -0.73 -9.27 5.56 -60.30 -0.33 -9.60 16 15 C 0.51 6.57 7.34 -10.99 -0.08 6.49 16 16 O -0.54 -9.08 15.07 5.56 0.08 -9.00 16 17 C -0.13 -1.19 4.94 -27.89 -0.14 -1.32 16 18 C -0.11 -0.99 2.67 -89.09 -0.24 -1.23 16 19 H 0.09 0.94 8.02 -51.93 -0.42 0.53 16 20 C -0.15 -1.07 6.71 -24.72 -0.17 -1.24 16 21 C 0.05 0.36 7.72 38.21 0.29 0.66 16 22 O -0.38 -4.42 11.52 -35.23 -0.41 -4.82 16 23 C 0.06 0.66 6.31 37.73 0.24 0.90 16 24 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 26 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.06 1.28 3.38 -51.93 -0.18 1.11 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.99 7.25 -51.93 -0.38 0.61 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -32.96 337.09 -6.61 -39.57 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.21 Total: -0.67 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 0.12 Total: 2.73 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.01 Total: -50.89 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.32 Total: -13.82 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.27 Total: 17.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.96 -6.61 -39.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479764089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.351 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds