Wall clock time and date at job start Mon Mar 30 2020 01:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99740 * 2 1 4 4 H 1.07995 * 120.00292 * 322.03513 * 3 2 1 5 5 C 1.38813 * 119.99546 * 142.03821 * 3 2 1 6 6 N 1.31625 * 119.99726 * 157.02147 * 5 3 2 7 7 Si 1.86796 * 120.00294 * 337.01589 * 5 3 2 8 8 H 1.48504 * 109.47230 * 95.68617 * 7 5 3 9 9 H 1.48502 * 109.47304 * 215.67964 * 7 5 3 10 10 H 1.48498 * 109.47250 * 335.68281 * 7 5 3 11 11 C 1.46499 * 120.00250 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47098 * 89.99978 * 11 2 1 13 13 C 1.53000 * 109.47043 * 180.02562 * 12 11 2 14 14 N 1.46495 * 109.47433 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00782 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99614 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00379 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.47030 * 179.97438 * 17 15 14 19 19 H 1.09006 * 110.43547 * 303.90772 * 18 17 15 20 20 C 1.54815 * 110.48818 * 181.22127 * 18 17 15 21 21 C 1.54996 * 102.09207 * 220.44094 * 20 18 17 22 22 O 1.44375 * 103.48871 * 37.02485 * 21 20 18 23 23 C 1.43749 * 106.97795 * 319.93589 * 22 21 20 24 24 H 1.08996 * 109.46839 * 265.64917 * 1 2 3 25 25 H 1.08994 * 109.46694 * 25.65039 * 1 2 3 26 26 H 1.08995 * 109.47014 * 145.65158 * 1 2 3 27 27 H 0.97004 * 119.99720 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46545 * 330.00269 * 11 2 1 29 29 H 1.08996 * 109.47656 * 210.00348 * 11 2 1 30 30 H 1.08993 * 109.47059 * 60.00290 * 12 11 2 31 31 H 1.09002 * 109.46806 * 299.99845 * 12 11 2 32 32 H 1.08996 * 109.47416 * 300.00189 * 13 12 11 33 33 H 1.09005 * 109.47437 * 59.99673 * 13 12 11 34 34 H 0.97006 * 119.99389 * 359.97438 * 14 13 12 35 35 H 1.09003 * 109.47406 * 299.99693 * 17 15 14 36 36 H 1.09000 * 109.47380 * 60.00038 * 17 15 14 37 37 H 1.08995 * 110.91034 * 338.64054 * 20 18 17 38 38 H 1.09000 * 110.90694 * 102.24384 * 20 18 17 39 39 H 1.09002 * 110.61898 * 278.52279 * 21 20 18 40 40 H 1.09005 * 110.61741 * 155.52459 * 21 20 18 41 41 H 1.08997 * 109.87312 * 267.09335 * 23 22 21 42 42 H 1.08994 * 110.00075 * 146.00754 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7811 2.0223 -0.5753 5 6 3.3175 1.3131 0.7395 6 7 4.2044 2.2305 0.4165 7 14 3.6304 0.1824 2.1931 8 1 4.4681 -0.9638 1.7574 9 1 4.3369 0.9337 3.2616 10 1 2.3351 -0.3216 2.7160 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2171 -3.0363 -1.4411 14 7 3.4608 -3.4602 -2.8221 15 6 4.1223 -4.6083 -3.0679 16 8 4.5156 -5.2909 -2.1458 17 6 4.3724 -5.0446 -4.4885 18 6 5.1371 -6.3698 -4.4879 19 1 6.0619 -6.2754 -3.9187 20 6 5.4337 -6.8249 -5.9376 21 6 5.1773 -8.3515 -5.8576 22 8 4.0518 -8.4573 -4.9596 23 6 4.2608 -7.4979 -3.9097 24 1 -0.3633 -0.0780 1.0247 25 1 -0.3632 0.9264 -0.4448 26 1 -0.3633 -0.8484 -0.5798 27 1 5.0207 2.3191 0.9331 28 1 1.6084 -2.0281 0.5147 29 1 3.1500 -1.1382 0.5144 30 1 3.0416 -0.9516 -1.9559 31 1 1.5001 -1.8416 -1.9555 32 1 4.1695 -2.9062 -0.9272 33 1 2.6277 -3.7956 -0.9270 34 1 3.1453 -2.9147 -3.5596 35 1 3.4197 -5.1747 -5.0018 36 1 4.9618 -4.2858 -5.0032 37 1 4.7491 -6.3519 -6.6416 38 1 6.4697 -6.6180 -6.2059 39 1 6.0461 -8.8656 -5.4464 40 1 4.9235 -8.7500 -6.8398 41 1 4.7716 -7.9714 -3.0713 42 1 3.3045 -7.0922 -3.5797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479764089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:54 Heat of formation + Delta-G solvation = -95.890954 kcal Electronic energy + Delta-G solvation = -20723.684288 eV Core-core repulsion = 17510.085075 eV Total energy + Delta-G solvation = -3213.599213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17225 -39.87744 -38.20112 -36.15347 -34.50152 -33.85667 -32.38561 -30.77872 -28.51497 -27.99380 -26.50609 -23.82008 -23.27970 -22.50646 -21.92309 -20.93425 -18.76886 -18.06368 -17.65223 -17.38776 -17.10466 -16.69537 -16.49533 -15.91462 -15.73609 -15.42341 -15.05508 -14.76598 -14.60268 -14.13847 -13.86099 -13.77490 -13.39229 -13.31604 -12.91992 -12.71094 -12.67674 -12.55855 -12.37719 -12.19748 -12.12739 -11.89230 -11.76434 -11.62638 -11.40168 -10.92301 -10.65235 -10.62125 -10.09767 -8.78364 -8.23497 -5.60580 1.28322 1.38813 1.49235 1.64429 2.19858 2.39119 3.01849 3.03878 3.40971 3.48624 3.71196 3.86976 3.97670 4.04202 4.19277 4.28019 4.38357 4.39051 4.46548 4.52954 4.60763 4.70125 4.74254 4.76441 4.78275 4.84608 4.89171 4.96182 5.02536 5.07983 5.13293 5.22423 5.22952 5.36439 5.45853 5.92558 5.93427 6.14693 6.57264 6.97303 7.25879 7.61251 8.03656 8.96160 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.003245 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.640771 B = 8627.757738 C = 8809.293324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.627 5.627 3 C -0.259 4.259 4 H 0.045 0.955 5 C -0.016 4.016 6 N -0.945 5.945 7 Si 0.936 3.064 8 H -0.276 1.276 9 H -0.307 1.307 10 H -0.261 1.261 11 C 0.133 3.867 12 C -0.127 4.127 13 C 0.127 3.873 14 N -0.719 5.719 15 C 0.502 3.498 16 O -0.586 6.586 17 C -0.123 4.123 18 C -0.106 4.106 19 H 0.079 0.921 20 C -0.142 4.142 21 C 0.036 3.964 22 O -0.406 6.406 23 C 0.059 3.941 24 H 0.012 0.988 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.263 0.737 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.416 0.584 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.045 0.955 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -18.660 -14.725 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.352 5.352 3 C -0.389 4.389 4 H 0.063 0.937 5 C -0.213 4.213 6 N -0.589 5.589 7 Si 0.766 3.234 8 H -0.203 1.203 9 H -0.236 1.236 10 H -0.186 1.186 11 C 0.008 3.992 12 C -0.167 4.167 13 C 0.002 3.998 14 N -0.371 5.371 15 C 0.290 3.710 16 O -0.466 6.466 17 C -0.163 4.163 18 C -0.125 4.125 19 H 0.097 0.903 20 C -0.179 4.179 21 C -0.040 4.040 22 O -0.326 6.326 23 C -0.018 4.018 24 H 0.031 0.969 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.252 0.748 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.063 0.937 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.039 -19.186 -14.034 23.771 hybrid contribution 0.549 0.497 0.959 1.212 sum 0.588 -18.690 -13.075 22.816 Atomic orbital electron populations 1.21211 0.82127 1.00518 0.98403 1.44221 1.02445 1.01427 1.87122 1.18697 1.05837 0.91653 1.22734 0.93747 1.26035 0.97031 0.98302 0.99959 1.69993 1.09268 1.38799 1.40814 0.85962 0.78169 0.78409 0.80904 1.20314 1.23601 1.18566 1.21147 0.95541 0.87316 0.95241 1.22084 1.00520 0.94562 0.99499 1.21161 0.99133 0.96029 0.83453 1.46029 1.57932 1.24097 1.09034 1.21429 0.76564 0.80158 0.92859 1.90691 1.52584 1.55163 1.48182 1.21797 1.04145 0.98488 0.91846 1.22280 0.98907 0.93721 0.97613 0.90302 1.23222 1.04345 0.95438 0.94889 1.23793 0.88995 0.96470 0.94704 1.88843 1.45083 1.59846 1.38787 1.23098 0.99738 0.89018 0.89904 0.96928 0.93900 0.91940 0.92814 0.91573 0.95273 0.92852 0.89892 0.94027 0.91449 0.74767 0.86297 0.85764 0.88642 0.88160 0.91924 0.87151 0.93673 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.49 10.70 127.77 1.37 5.85 16 2 N -0.63 -28.70 2.47 -726.95 -1.79 -30.49 16 3 C -0.26 -14.47 9.88 84.03 0.83 -13.64 16 4 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 5 C -0.02 -0.95 5.29 84.86 0.45 -0.50 16 6 N -0.94 -58.52 13.97 21.65 0.30 -58.21 16 7 Si 0.94 46.43 25.10 68.60 1.72 48.15 16 8 H -0.28 -13.17 6.68 99.48 0.66 -12.50 16 9 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 10 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 11 C 0.13 5.34 4.53 86.38 0.39 5.73 16 12 C -0.13 -4.15 5.65 30.59 0.17 -3.97 16 13 C 0.13 3.80 5.67 86.38 0.49 4.29 16 14 N -0.72 -16.90 5.56 -463.08 -2.57 -19.48 16 15 C 0.50 12.22 7.34 87.66 0.64 12.87 16 16 O -0.59 -19.37 15.07 -3.03 -0.05 -19.41 16 17 C -0.12 -1.83 4.94 29.85 0.15 -1.68 16 18 C -0.11 -1.79 2.67 -9.80 -0.03 -1.82 16 19 H 0.08 1.55 8.02 -2.38 -0.02 1.53 16 20 C -0.14 -1.54 6.71 31.90 0.21 -1.33 16 21 C 0.04 0.50 7.72 72.67 0.56 1.06 16 22 O -0.41 -8.91 11.52 -148.98 -1.72 -10.63 16 23 C 0.06 1.30 6.31 72.35 0.46 1.76 16 24 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.04 1.58 8.00 -2.39 -0.02 1.56 16 26 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 27 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.07 2.31 8.07 -2.38 -0.02 2.29 16 29 H 0.03 1.33 3.38 -2.39 -0.01 1.32 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.42 7.28 8.47 -92.70 -0.79 6.50 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 0.79 7.87 -2.39 -0.02 0.77 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.69 7.25 -2.39 -0.02 1.68 16 Total: -1.00 -72.97 337.09 1.76 -71.22 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.16 Total: 10.23 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.70 Total: 8.62 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.06 Total: -108.18 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.76 Total: -30.04 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.72 Total: 48.15 kcal Total: -72.97 1.76 -71.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479764089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.675 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds