Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99859 * 2 1 4 4 C 1.53002 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47338 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99650 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.46495 * 119.99922 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99953 * 180.02562 * 7 5 4 10 10 C 1.53045 * 109.46217 * 119.99530 * 9 7 5 11 11 C 1.53188 * 109.31391 * 181.38498 * 10 9 7 12 12 N 1.46936 * 108.89281 * 305.29783 * 11 10 9 13 13 C 1.36935 * 120.62903 * 233.68017 * 12 11 10 14 14 H 1.08007 * 119.99920 * 27.39746 * 13 12 11 15 15 C 1.38804 * 120.00238 * 207.39383 * 13 12 11 16 16 N 1.31624 * 120.00025 * 17.25587 * 15 13 12 17 17 Si 1.86801 * 120.00311 * 197.25673 * 15 13 12 18 18 H 1.48497 * 109.47244 * 60.00150 * 17 15 13 19 19 H 1.48504 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47113 * 300.00082 * 17 15 13 21 21 C 1.47199 * 118.55327 * 53.53951 * 12 11 10 22 22 C 1.53035 * 109.45950 * 240.07015 * 9 7 5 23 23 H 1.09006 * 109.46867 * 59.99956 * 1 2 3 24 24 H 1.08999 * 109.47369 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47553 * 300.00277 * 1 2 3 26 26 H 1.09004 * 109.47092 * 60.00249 * 3 2 1 27 27 H 1.08999 * 109.47344 * 299.99799 * 3 2 1 28 28 H 1.09004 * 109.46655 * 60.00425 * 4 3 2 29 29 H 1.08999 * 109.47294 * 300.00274 * 4 3 2 30 30 H 1.09005 * 109.47097 * 269.99794 * 8 7 5 31 31 H 1.08998 * 109.47617 * 30.00069 * 8 7 5 32 32 H 1.09006 * 109.47226 * 150.00467 * 8 7 5 33 33 H 1.09002 * 109.44878 * 0.03212 * 9 7 5 34 34 H 1.09001 * 109.49105 * 61.43765 * 10 9 7 35 35 H 1.08999 * 109.52410 * 301.35407 * 10 9 7 36 36 H 1.08994 * 109.58954 * 65.15196 * 11 10 9 37 37 H 1.08992 * 109.58924 * 185.43968 * 11 10 9 38 38 H 0.96996 * 120.00327 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.53153 * 186.67308 * 21 12 11 40 40 H 1.09002 * 109.68302 * 66.36980 * 21 12 11 41 41 H 1.09007 * 109.49366 * 298.56131 * 22 9 7 42 42 H 1.08993 * 109.50367 * 58.62610 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 8 3.4356 3.5425 0.0017 7 7 5.4888 2.7022 0.0014 8 6 6.3499 1.5170 0.0003 9 6 6.0847 4.0405 0.0026 10 6 6.9511 4.2118 1.2525 11 6 7.5447 5.6239 1.2679 12 7 8.2600 5.8532 0.0050 13 6 9.5657 6.2657 0.0077 14 1 10.2093 6.0155 0.8382 15 6 10.0622 7.0053 -1.0568 16 7 9.2331 7.5981 -1.8897 17 14 11.9069 7.1595 -1.3073 18 1 12.4943 5.8098 -1.5034 19 1 12.1756 7.9956 -2.5048 20 1 12.5172 7.7961 -0.1126 21 6 7.5433 5.6267 -1.2607 22 6 6.9497 4.2145 -1.2478 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8574 0.6436 -0.8892 29 1 3.8567 0.6438 0.8908 30 1 6.5635 1.2221 1.0278 31 1 5.8435 0.7004 -0.5142 32 1 7.2835 1.7466 -0.5133 33 1 5.2934 4.7901 0.0038 34 1 7.7574 3.4784 1.2394 35 1 6.3396 4.0645 2.1426 36 1 6.7438 6.3558 1.3721 37 1 8.2382 5.7197 2.1032 38 1 9.5800 8.1152 -2.6334 39 1 8.2379 5.7236 -2.0951 40 1 6.7424 6.3587 -1.3651 41 1 7.7561 3.4811 -1.2372 42 1 6.3370 4.0688 -2.1373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479881366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = -62.318654 kcal Electronic energy + Delta-G solvation = -21429.366023 eV Core-core repulsion = 18217.222614 eV Total energy + Delta-G solvation = -3212.143409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05895 -38.10137 -37.31349 -35.10566 -32.75095 -31.69677 -30.15521 -29.53462 -26.92810 -26.81999 -25.19859 -23.65101 -22.19168 -21.69357 -19.27239 -18.78742 -17.36335 -16.79067 -16.50645 -16.24827 -15.47761 -15.25952 -15.01510 -14.72270 -13.87276 -13.64664 -13.58483 -13.28519 -13.00397 -12.73584 -12.54782 -12.42113 -12.36445 -11.95970 -11.59542 -11.48013 -11.32627 -11.11802 -10.82224 -10.72448 -10.35054 -10.23419 -10.09302 -9.89157 -9.79365 -9.69285 -9.48552 -8.54862 -8.30972 -6.70315 -5.79693 -3.21744 2.70813 2.95935 3.37796 3.43738 3.44585 3.70438 4.48733 4.59906 4.83422 4.87350 5.10084 5.12743 5.15781 5.30538 5.34639 5.39983 5.40271 5.44104 5.51530 5.60237 5.60697 5.70700 5.75042 5.87807 6.07567 6.21608 6.33469 6.48293 6.56264 6.62176 6.76549 6.88385 6.89972 6.95938 7.32914 7.53726 7.65539 7.78081 8.27435 8.43363 9.19462 9.83017 10.40326 11.29263 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048213 B = 0.003512 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.615738 B = 7971.876528 C = 8022.204733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.076 3.924 4 C -0.138 4.138 5 C 0.514 3.486 6 O -0.547 6.547 7 N -0.607 5.607 8 C 0.074 3.926 9 C 0.144 3.856 10 C -0.137 4.137 11 C 0.147 3.853 12 N -0.592 5.592 13 C -0.253 4.253 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.903 3.097 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.173 3.827 22 C -0.145 4.145 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.255 0.745 39 H 0.091 0.909 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 -15.266 3.263 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.001 4.001 4 C -0.178 4.178 5 C 0.302 3.698 6 O -0.425 6.425 7 N -0.339 5.339 8 C -0.069 4.069 9 C 0.042 3.958 10 C -0.177 4.177 11 C 0.020 3.980 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.733 3.267 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.047 3.953 22 C -0.185 4.185 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.546 -14.782 3.120 19.014 hybrid contribution 0.826 0.207 -0.192 0.873 sum -10.720 -14.575 2.928 18.328 Atomic orbital electron populations 1.22722 0.80730 1.02591 1.00235 1.87790 1.19973 1.28259 1.95586 1.22189 0.92122 0.83968 1.01821 1.21506 0.95173 0.95785 1.05299 1.20350 0.82368 0.90790 0.76331 1.90699 1.60577 1.40811 1.50419 1.48143 1.05265 1.08126 1.72336 1.21795 0.96024 0.87272 1.01806 1.21214 0.95861 0.82356 0.96360 1.22357 0.98503 1.00889 0.95975 1.20862 0.94939 0.91813 0.90362 1.44142 1.10220 1.77768 0.99397 1.19138 0.85614 1.27401 1.06126 0.91648 1.25043 0.97797 0.96909 0.99910 1.70021 1.33044 1.33850 1.17789 0.86362 0.85454 0.77551 0.77349 1.21062 1.21637 1.20881 1.20805 0.95201 0.88779 0.90550 1.22557 0.98210 1.02352 0.95416 0.93963 0.89646 0.93975 0.92386 0.92345 0.88192 0.88256 0.92629 0.91344 0.90292 0.88687 0.92082 0.92995 0.96238 0.92485 0.93525 0.89087 0.96129 0.92359 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.40 -4.36 10.70 -35.23 -0.38 -4.74 16 3 C 0.08 0.86 5.23 37.16 0.19 1.06 16 4 C -0.14 -1.50 4.62 -27.88 -0.13 -1.63 16 5 C 0.51 7.62 7.67 -10.99 -0.08 7.54 16 6 O -0.55 -10.18 15.31 5.55 0.09 -10.10 16 7 N -0.61 -8.85 2.76 -173.89 -0.48 -9.33 16 8 C 0.07 0.81 9.33 59.84 0.56 1.37 16 9 C 0.14 2.56 2.48 -67.89 -0.17 2.39 16 10 C -0.14 -2.41 5.34 -26.61 -0.14 -2.55 16 11 C 0.15 3.11 6.51 -3.71 -0.02 3.08 16 12 N -0.59 -14.78 3.01 -172.10 -0.52 -15.30 16 13 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 14 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 15 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 16 N -0.90 -26.18 11.18 55.49 0.62 -25.56 16 17 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.17 4.13 5.33 -3.56 -0.02 4.11 16 22 C -0.15 -2.78 5.31 -26.61 -0.14 -2.92 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.06 0.70 8.10 -51.93 -0.42 0.27 16 28 H 0.10 0.94 7.40 -51.93 -0.38 0.56 16 29 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 32 H 0.08 0.92 6.46 -51.93 -0.34 0.58 16 33 H 0.10 1.93 6.90 -51.93 -0.36 1.57 16 34 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 39 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.09 6.73 -51.93 -0.35 0.74 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -31.63 332.46 -6.84 -38.48 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.08 Total: -1.71 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.93 Total: 6.77 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.38 Total: -50.19 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.29 Total: -14.83 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.63 -6.84 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479881366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.842 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds