Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99859 * 2 1 4 4 C 1.53002 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47338 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99650 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00135 * 180.02562 * 5 4 3 8 8 C 1.46495 * 119.99922 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99953 * 180.02562 * 7 5 4 10 10 C 1.53045 * 109.46217 * 119.99530 * 9 7 5 11 11 C 1.53188 * 109.31391 * 181.38498 * 10 9 7 12 12 N 1.46936 * 108.89281 * 305.29783 * 11 10 9 13 13 C 1.36935 * 120.62903 * 233.68017 * 12 11 10 14 14 H 1.08007 * 119.99920 * 27.39746 * 13 12 11 15 15 C 1.38804 * 120.00238 * 207.39383 * 13 12 11 16 16 N 1.31624 * 120.00025 * 17.25587 * 15 13 12 17 17 Si 1.86801 * 120.00311 * 197.25673 * 15 13 12 18 18 H 1.48497 * 109.47244 * 60.00150 * 17 15 13 19 19 H 1.48504 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47113 * 300.00082 * 17 15 13 21 21 C 1.47199 * 118.55327 * 53.53951 * 12 11 10 22 22 C 1.53035 * 109.45950 * 240.07015 * 9 7 5 23 23 H 1.09006 * 109.46867 * 59.99956 * 1 2 3 24 24 H 1.08999 * 109.47369 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47553 * 300.00277 * 1 2 3 26 26 H 1.09004 * 109.47092 * 60.00249 * 3 2 1 27 27 H 1.08999 * 109.47344 * 299.99799 * 3 2 1 28 28 H 1.09004 * 109.46655 * 60.00425 * 4 3 2 29 29 H 1.08999 * 109.47294 * 300.00274 * 4 3 2 30 30 H 1.09005 * 109.47097 * 269.99794 * 8 7 5 31 31 H 1.08998 * 109.47617 * 30.00069 * 8 7 5 32 32 H 1.09006 * 109.47226 * 150.00467 * 8 7 5 33 33 H 1.09002 * 109.44878 * 0.03212 * 9 7 5 34 34 H 1.09001 * 109.49105 * 61.43765 * 10 9 7 35 35 H 1.08999 * 109.52410 * 301.35407 * 10 9 7 36 36 H 1.08994 * 109.58954 * 65.15196 * 11 10 9 37 37 H 1.08992 * 109.58924 * 185.43968 * 11 10 9 38 38 H 0.96996 * 120.00327 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.53153 * 186.67308 * 21 12 11 40 40 H 1.09002 * 109.68302 * 66.36980 * 21 12 11 41 41 H 1.09007 * 109.49366 * 298.56131 * 22 9 7 42 42 H 1.08993 * 109.50367 * 58.62610 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 8 3.4356 3.5425 0.0017 7 7 5.4888 2.7022 0.0014 8 6 6.3499 1.5170 0.0003 9 6 6.0847 4.0405 0.0026 10 6 6.9511 4.2118 1.2525 11 6 7.5447 5.6239 1.2679 12 7 8.2600 5.8532 0.0050 13 6 9.5657 6.2657 0.0077 14 1 10.2093 6.0155 0.8382 15 6 10.0622 7.0053 -1.0568 16 7 9.2331 7.5981 -1.8897 17 14 11.9069 7.1595 -1.3073 18 1 12.4943 5.8098 -1.5034 19 1 12.1756 7.9956 -2.5048 20 1 12.5172 7.7961 -0.1126 21 6 7.5433 5.6267 -1.2607 22 6 6.9497 4.2145 -1.2478 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8574 0.6436 -0.8892 29 1 3.8567 0.6438 0.8908 30 1 6.5635 1.2221 1.0278 31 1 5.8435 0.7004 -0.5142 32 1 7.2835 1.7466 -0.5133 33 1 5.2934 4.7901 0.0038 34 1 7.7574 3.4784 1.2394 35 1 6.3396 4.0645 2.1426 36 1 6.7438 6.3558 1.3721 37 1 8.2382 5.7197 2.1032 38 1 9.5800 8.1152 -2.6334 39 1 8.2379 5.7236 -2.0951 40 1 6.7424 6.3587 -1.3651 41 1 7.7561 3.4811 -1.2372 42 1 6.3370 4.0688 -2.1373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479881366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = -83.027386 kcal Electronic energy + Delta-G solvation = -21430.264021 eV Core-core repulsion = 18217.222614 eV Total energy + Delta-G solvation = -3213.041407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27377 -39.23911 -38.57008 -36.57010 -34.39798 -32.92576 -31.78869 -31.22976 -27.92035 -27.69270 -26.81392 -24.87711 -23.88816 -23.21962 -20.82077 -20.03362 -18.77336 -18.31719 -17.42213 -17.38749 -16.84095 -16.46021 -16.22174 -15.81397 -15.53898 -15.39255 -14.85788 -14.62487 -14.38610 -14.12173 -13.98107 -13.71260 -13.30762 -13.16473 -12.99918 -12.69322 -12.57533 -12.54499 -12.39564 -12.11975 -12.07986 -12.01941 -11.90384 -11.47258 -11.34354 -10.84249 -10.67692 -10.56593 -9.60002 -8.73437 -7.88203 -5.33848 1.48535 1.50541 1.57750 1.57968 1.88109 2.51712 2.85012 3.27655 3.60306 3.64935 3.86824 4.00483 4.05351 4.12289 4.28299 4.33888 4.44853 4.49425 4.52154 4.53692 4.63818 4.68448 4.74430 4.79491 4.84129 4.84942 4.85799 5.00338 5.03982 5.05233 5.13504 5.28846 5.44560 5.58588 5.62747 5.68377 6.13057 6.37243 6.43270 7.12344 7.13483 7.82507 8.36233 9.19150 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048213 B = 0.003512 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.615738 B = 7971.876528 C = 8022.204733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.078 3.922 4 C -0.125 4.125 5 C 0.509 3.491 6 O -0.593 6.593 7 N -0.605 5.605 8 C 0.067 3.933 9 C 0.153 3.847 10 C -0.120 4.120 11 C 0.142 3.858 12 N -0.609 5.609 13 C -0.263 4.263 14 H 0.072 0.928 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.971 3.029 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.275 1.275 21 C 0.180 3.820 22 C -0.127 4.127 23 H 0.045 0.955 24 H 0.105 0.895 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.006 0.994 37 H 0.063 0.937 38 H 0.250 0.750 39 H 0.061 0.939 40 H -0.012 1.012 41 H 0.070 0.930 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.963 -18.190 4.142 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.001 3.999 4 C -0.164 4.164 5 C 0.299 3.701 6 O -0.474 6.474 7 N -0.336 5.336 8 C -0.074 4.074 9 C 0.049 3.951 10 C -0.160 4.160 11 C 0.016 3.984 12 N -0.332 5.332 13 C -0.393 4.393 14 H 0.090 0.910 15 C -0.248 4.248 16 N -0.584 5.584 17 Si 0.798 3.202 18 H -0.200 1.200 19 H -0.223 1.223 20 H -0.201 1.201 21 C 0.054 3.946 22 C -0.167 4.167 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.007 0.993 41 H 0.089 0.911 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.160 -17.762 4.027 21.360 hybrid contribution 0.622 1.128 -0.429 1.357 sum -10.538 -16.634 3.598 20.017 Atomic orbital electron populations 1.22946 0.79303 1.04107 1.00704 1.87759 1.21574 1.27658 1.95620 1.22087 0.92726 0.84204 1.00889 1.21457 0.94377 0.93149 1.07455 1.21063 0.82039 0.91889 0.75074 1.90687 1.61607 1.42723 1.52433 1.48098 1.05790 1.07761 1.71998 1.22097 0.95430 0.86365 1.03526 1.20792 0.94695 0.83963 0.95650 1.22139 0.98812 0.98416 0.96599 1.21006 0.94515 0.93851 0.88997 1.44395 1.10107 1.77976 1.00767 1.19518 0.86779 1.26782 1.06185 0.91037 1.25849 1.02019 0.96995 0.99912 1.70196 1.34878 1.35015 1.18361 0.85297 0.80278 0.77639 0.76959 1.20036 1.22286 1.20102 1.20565 0.93511 0.90993 0.89543 1.22279 0.98637 0.99144 0.96670 0.93594 0.87639 0.93475 0.93319 0.93521 0.85954 0.85803 0.90676 0.88188 0.90875 0.91800 0.90773 0.91036 0.97630 0.91824 0.94086 0.92106 0.99345 0.91139 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.99 10.70 -148.98 -1.59 -9.59 16 3 C 0.08 1.65 5.23 71.98 0.38 2.03 16 4 C -0.13 -2.33 4.62 29.85 0.14 -2.19 16 5 C 0.51 14.22 7.67 87.66 0.67 14.89 16 6 O -0.59 -22.12 15.31 -3.04 -0.05 -22.17 16 7 N -0.61 -16.25 2.76 -822.44 -2.27 -18.52 16 8 C 0.07 1.19 9.33 127.77 1.19 2.39 16 9 C 0.15 5.31 2.48 45.02 0.11 5.42 16 10 C -0.12 -4.01 5.34 30.67 0.16 -3.84 16 11 C 0.14 6.00 6.51 86.36 0.56 6.56 16 12 N -0.61 -30.82 3.01 -698.39 -2.10 -32.92 16 13 C -0.26 -14.36 9.59 84.03 0.81 -13.55 16 14 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 15 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 16 N -0.94 -56.18 11.18 21.65 0.24 -55.94 16 17 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 C 0.18 8.92 5.33 86.31 0.46 9.38 16 22 C -0.13 -4.85 5.31 30.67 0.16 -4.69 16 23 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 24 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 26 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 27 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 28 H 0.12 1.79 7.40 -2.39 -0.02 1.77 16 29 H 0.12 1.77 8.11 -2.39 -0.02 1.75 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.10 1.17 6.44 -2.39 -0.02 1.16 16 32 H 0.07 1.42 6.46 -2.38 -0.02 1.41 16 33 H 0.06 2.66 6.90 -2.39 -0.02 2.64 16 34 H 0.07 2.32 7.72 -2.39 -0.02 2.30 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.06 2.55 7.93 -2.39 -0.02 2.54 16 38 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 39 H 0.06 3.36 6.04 -2.39 -0.01 3.35 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.07 2.52 6.73 -2.38 -0.02 2.51 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -70.54 332.46 3.55 -66.99 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.98 Total: 10.15 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.31 Total: 15.47 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -4.13 Total: -107.38 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.64 Total: -31.76 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -70.54 3.55 -66.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479881366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.041 kcal (2) G-P(sol) polarization free energy of solvation -70.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds