Wall clock time and date at job start Mon Mar 30 2020 01:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46999 * 2 1 4 4 C 1.42895 * 113.99750 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47626 * 330.00667 * 4 3 2 6 6 C 1.53006 * 109.47036 * 90.00531 * 4 3 2 7 7 C 1.50699 * 109.47044 * 210.00117 * 4 3 2 8 8 O 1.21276 * 120.00180 * 355.00259 * 7 4 3 9 9 N 1.34778 * 119.99817 * 175.00362 * 7 4 3 10 10 C 1.46510 * 119.99810 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47192 * 294.99728 * 11 10 9 13 13 N 1.46500 * 109.47212 * 55.00137 * 11 10 9 14 14 C 1.36931 * 119.99915 * 204.99683 * 13 11 10 15 15 H 1.08001 * 120.00200 * 0.02562 * 14 13 11 16 16 C 1.38814 * 120.00036 * 180.02562 * 14 13 11 17 17 N 1.31621 * 119.99590 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00073 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47340 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47088 * 119.99960 * 18 16 14 21 21 H 1.48499 * 109.47172 * 239.99893 * 18 16 14 22 22 C 1.52998 * 109.46836 * 175.00110 * 11 10 9 23 23 C 1.53001 * 117.49851 * 248.74806 * 22 11 10 24 24 C 1.53000 * 117.50098 * 180.08694 * 22 11 10 25 25 H 1.08996 * 109.47088 * 299.99842 * 1 2 3 26 26 H 1.09002 * 109.47005 * 60.00245 * 1 2 3 27 27 H 1.08999 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47105 * 240.00429 * 2 1 3 29 29 H 1.08997 * 109.47056 * 120.00490 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99477 * 6 4 3 31 31 H 1.08993 * 109.46955 * 59.99914 * 6 4 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 6 4 3 33 33 H 0.96996 * 120.00289 * 359.97438 * 9 7 4 34 34 H 1.08996 * 109.46869 * 300.00417 * 10 9 7 35 35 H 1.09007 * 109.46921 * 60.00063 * 10 9 7 36 36 H 0.96998 * 119.99629 * 24.99615 * 13 11 10 37 37 H 0.97001 * 119.99474 * 180.02562 * 17 16 14 38 38 H 1.09003 * 115.54975 * 34.41828 * 22 11 10 39 39 H 1.09001 * 117.49847 * 0.02562 * 23 22 11 40 40 H 1.09002 * 117.49882 * 145.02477 * 23 22 11 41 41 H 1.08999 * 117.49965 * 214.98052 * 24 22 11 42 42 H 1.09003 * 117.49713 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8632 0.6016 0.5146 6 6 3.9398 1.5003 -1.4418 7 6 3.8341 2.7265 0.7110 8 8 2.9856 3.5049 1.0915 9 7 5.1379 2.9940 0.9234 10 6 5.5300 4.2254 1.6136 11 6 7.0549 4.2843 1.7246 12 1 7.4044 3.4726 2.3624 13 7 7.6472 4.1478 0.3916 14 6 8.9215 3.6658 0.2548 15 1 9.4898 3.3859 1.1295 16 6 9.4830 3.5369 -1.0081 17 7 8.7902 3.8776 -2.0741 18 14 11.2212 2.8787 -1.1948 19 1 11.7799 2.5689 0.1457 20 1 11.1967 1.6428 -2.0180 21 1 12.0685 3.9003 -1.8608 22 6 7.4704 5.6255 2.3324 23 6 8.1999 6.6172 1.4239 24 6 8.9667 5.8805 2.5251 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.6482 0.5843 -1.9556 31 1 3.5076 2.3587 -1.9558 32 1 5.0264 1.5868 -1.4413 33 1 5.8166 2.3713 0.6194 34 1 5.1727 5.0872 1.0500 35 1 5.0927 4.2374 2.6120 36 1 7.1366 4.3989 -0.3939 37 1 9.1824 3.7872 -2.9567 38 1 6.7900 6.0340 3.0796 39 1 8.3833 6.3142 0.3930 40 1 7.9996 7.6781 1.5736 41 1 9.2705 6.4572 3.3987 42 1 9.6550 5.0926 2.2191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480004750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:05 Heat of formation + Delta-G solvation = -52.190810 kcal Electronic energy + Delta-G solvation = -21344.683097 eV Core-core repulsion = 18132.978865 eV Total energy + Delta-G solvation = -3211.704233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69686 -37.98415 -37.28548 -34.44778 -33.29494 -32.44360 -30.90979 -29.97705 -28.02590 -24.66784 -23.55342 -22.87413 -22.22849 -21.48470 -20.05580 -19.04206 -17.51922 -16.98704 -16.80262 -15.78698 -15.33406 -15.25595 -14.71290 -14.43882 -14.27782 -13.67427 -13.33986 -13.16115 -13.02613 -12.85707 -12.52023 -12.17283 -12.01146 -11.93412 -11.43923 -11.25252 -11.19873 -11.03640 -10.91939 -10.87328 -10.52919 -10.11885 -9.86163 -9.71529 -9.52774 -9.27590 -9.12377 -9.01139 -8.61110 -7.10075 -5.87270 -3.17323 2.93659 3.11775 3.35627 3.42609 3.44439 4.05282 4.47006 4.62183 4.84331 4.90835 5.04535 5.11865 5.19367 5.24031 5.36410 5.44035 5.48656 5.57080 5.72819 5.76056 5.79498 5.81558 5.84208 5.97657 6.00854 6.04542 6.08633 6.27479 6.37738 6.45513 6.64371 6.74140 6.88891 6.99142 7.12012 7.26642 7.62986 7.94766 8.29880 8.59609 9.42477 9.96258 10.32786 11.34138 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.004841 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.969757 B = 5782.079224 C = 6946.962121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.073 3.927 5 H 0.083 0.917 6 C -0.170 4.170 7 C 0.512 3.488 8 O -0.535 6.535 9 N -0.710 5.710 10 C 0.121 3.879 11 C 0.192 3.808 12 H 0.057 0.943 13 N -0.717 5.717 14 C -0.240 4.240 15 H 0.072 0.928 16 C -0.007 4.007 17 N -0.927 5.927 18 Si 0.902 3.098 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.178 4.178 23 C -0.163 4.163 24 C -0.175 4.175 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.410 0.590 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 -6.181 5.011 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.011 3.989 5 H 0.100 0.900 6 C -0.228 4.228 7 C 0.296 3.704 8 O -0.412 6.412 9 N -0.364 5.364 10 C -0.004 4.004 11 C 0.081 3.919 12 H 0.075 0.925 13 N -0.359 5.359 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.575 5.575 18 Si 0.733 3.267 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.199 4.199 23 C -0.200 4.200 24 C -0.212 4.212 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.696 -5.543 5.294 12.360 hybrid contribution 1.434 -0.675 -0.574 1.685 sum -8.262 -6.217 4.721 11.367 Atomic orbital electron populations 1.21719 0.93657 1.01978 1.03347 1.22561 0.95766 0.83941 1.00005 1.88043 1.18862 1.25886 1.94986 1.21888 0.83152 0.96695 0.97124 0.89968 1.22230 1.02787 1.03249 0.94532 1.20281 0.82892 0.87578 0.79617 1.90676 1.50463 1.49134 1.50901 1.45899 1.06763 1.24452 1.59266 1.21580 0.96018 0.86368 0.96406 1.19993 0.89057 0.93792 0.89023 0.92501 1.42483 1.15075 1.77001 1.01360 1.19213 0.90642 1.34987 0.92204 0.91011 1.24702 0.98131 1.02033 0.95541 1.69669 1.36692 1.53731 0.97417 0.86209 0.84817 0.78194 0.77484 1.20603 1.21974 1.21915 1.23066 0.94602 0.99671 1.02609 1.22913 1.03631 0.94730 0.98710 1.22850 0.94667 1.03997 0.99727 0.91750 0.91788 0.91219 0.93257 0.93413 0.91693 0.91149 0.89889 0.75400 0.91645 0.91866 0.77900 0.93503 0.89616 0.86342 0.91290 0.91033 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.05 0.58 6.47 37.16 0.24 0.82 16 3 O -0.36 -5.39 9.53 -55.09 -0.52 -5.92 16 4 C 0.07 1.03 3.13 -27.88 -0.09 0.94 16 5 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 6 C -0.17 -2.26 9.48 37.16 0.35 -1.91 16 7 C 0.51 8.85 7.18 -10.99 -0.08 8.77 16 8 O -0.54 -11.27 16.51 -14.30 -0.24 -11.51 16 9 N -0.71 -11.67 5.35 -60.29 -0.32 -11.99 16 10 C 0.12 2.05 5.22 -4.04 -0.02 2.02 16 11 C 0.19 3.47 2.86 -67.93 -0.19 3.27 16 12 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 13 N -0.72 -15.55 3.08 -53.43 -0.16 -15.71 16 14 C -0.24 -5.82 8.15 -15.06 -0.12 -5.95 16 15 H 0.07 1.74 6.91 -52.49 -0.36 1.37 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -25.65 13.06 55.49 0.72 -24.93 16 18 Si 0.90 20.94 29.55 -169.99 -5.02 15.91 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 C -0.18 -3.07 5.70 -90.62 -0.52 -3.59 16 23 C -0.16 -3.02 9.74 -26.69 -0.26 -3.28 16 24 C -0.18 -3.09 9.87 -26.69 -0.26 -3.36 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 29 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 33 H 0.41 6.58 7.92 -40.82 -0.32 6.26 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.39 9.25 7.80 -40.82 -0.32 8.93 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 39 H 0.12 2.63 6.68 -51.93 -0.35 2.28 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.10 2.01 6.22 -51.93 -0.32 1.69 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -29.19 346.69 -8.07 -37.26 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -7.09 Total: 15.20 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.67 Total: -3.55 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.24 Total: -52.63 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.76 Total: -17.43 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.19 -8.07 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480004750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.928 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds