Wall clock time and date at job start Mon Mar 30 2020 01:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46999 * 2 1 4 4 C 1.42895 * 113.99750 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47626 * 330.00667 * 4 3 2 6 6 C 1.53006 * 109.47036 * 90.00531 * 4 3 2 7 7 C 1.50699 * 109.47044 * 210.00117 * 4 3 2 8 8 O 1.21276 * 120.00180 * 355.00259 * 7 4 3 9 9 N 1.34778 * 119.99817 * 175.00362 * 7 4 3 10 10 C 1.46510 * 119.99810 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47192 * 294.99728 * 11 10 9 13 13 N 1.46500 * 109.47212 * 55.00137 * 11 10 9 14 14 C 1.36931 * 119.99915 * 204.99683 * 13 11 10 15 15 H 1.08001 * 120.00200 * 0.02562 * 14 13 11 16 16 C 1.38814 * 120.00036 * 180.02562 * 14 13 11 17 17 N 1.31621 * 119.99590 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00073 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47340 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47088 * 119.99960 * 18 16 14 21 21 H 1.48499 * 109.47172 * 239.99893 * 18 16 14 22 22 C 1.52998 * 109.46836 * 175.00110 * 11 10 9 23 23 C 1.53001 * 117.49851 * 248.74806 * 22 11 10 24 24 C 1.53000 * 117.50098 * 180.08694 * 22 11 10 25 25 H 1.08996 * 109.47088 * 299.99842 * 1 2 3 26 26 H 1.09002 * 109.47005 * 60.00245 * 1 2 3 27 27 H 1.08999 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47105 * 240.00429 * 2 1 3 29 29 H 1.08997 * 109.47056 * 120.00490 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99477 * 6 4 3 31 31 H 1.08993 * 109.46955 * 59.99914 * 6 4 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 6 4 3 33 33 H 0.96996 * 120.00289 * 359.97438 * 9 7 4 34 34 H 1.08996 * 109.46869 * 300.00417 * 10 9 7 35 35 H 1.09007 * 109.46921 * 60.00063 * 10 9 7 36 36 H 0.96998 * 119.99629 * 24.99615 * 13 11 10 37 37 H 0.97001 * 119.99474 * 180.02562 * 17 16 14 38 38 H 1.09003 * 115.54975 * 34.41828 * 22 11 10 39 39 H 1.09001 * 117.49847 * 0.02562 * 23 22 11 40 40 H 1.09002 * 117.49882 * 145.02477 * 23 22 11 41 41 H 1.08999 * 117.49965 * 214.98052 * 24 22 11 42 42 H 1.09003 * 117.49713 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8632 0.6016 0.5146 6 6 3.9398 1.5003 -1.4418 7 6 3.8341 2.7265 0.7110 8 8 2.9856 3.5049 1.0915 9 7 5.1379 2.9940 0.9234 10 6 5.5300 4.2254 1.6136 11 6 7.0549 4.2843 1.7246 12 1 7.4044 3.4726 2.3624 13 7 7.6472 4.1478 0.3916 14 6 8.9215 3.6658 0.2548 15 1 9.4898 3.3859 1.1295 16 6 9.4830 3.5369 -1.0081 17 7 8.7902 3.8776 -2.0741 18 14 11.2212 2.8787 -1.1948 19 1 11.7799 2.5689 0.1457 20 1 11.1967 1.6428 -2.0180 21 1 12.0685 3.9003 -1.8608 22 6 7.4704 5.6255 2.3324 23 6 8.1999 6.6172 1.4239 24 6 8.9667 5.8805 2.5251 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.6482 0.5843 -1.9556 31 1 3.5076 2.3587 -1.9558 32 1 5.0264 1.5868 -1.4413 33 1 5.8166 2.3713 0.6194 34 1 5.1727 5.0872 1.0500 35 1 5.0927 4.2374 2.6120 36 1 7.1366 4.3989 -0.3939 37 1 9.1824 3.7872 -2.9567 38 1 6.7900 6.0340 3.0796 39 1 8.3833 6.3142 0.3930 40 1 7.9996 7.6781 1.5736 41 1 9.2705 6.4572 3.3987 42 1 9.6550 5.0926 2.2191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480004750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:04 Heat of formation + Delta-G solvation = -70.223423 kcal Electronic energy + Delta-G solvation = -21345.465050 eV Core-core repulsion = 18132.978865 eV Total energy + Delta-G solvation = -3212.486185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02018 -39.33839 -38.56876 -35.90642 -35.06088 -33.53264 -32.44484 -31.08307 -29.59539 -26.03920 -25.23281 -23.94732 -23.41345 -22.91932 -21.43169 -20.50554 -19.25466 -18.26074 -18.05274 -16.95434 -16.77757 -16.51420 -16.24882 -15.92482 -15.70192 -15.23290 -14.81841 -14.49586 -14.25038 -14.09627 -13.66197 -13.37482 -13.17776 -12.92544 -12.88363 -12.86772 -12.64137 -12.56411 -12.28184 -12.09847 -12.00642 -11.90807 -11.57316 -11.03986 -11.01639 -10.84084 -10.61774 -10.42731 -10.02575 -8.97164 -7.86088 -5.13576 1.49811 1.53514 1.58513 1.59892 1.93888 2.60256 2.96415 3.15276 3.48905 3.70457 3.89329 3.93292 3.99928 4.02734 4.21444 4.28798 4.34948 4.35230 4.49716 4.51175 4.59149 4.60794 4.67695 4.77784 4.89914 4.94815 4.98152 5.03532 5.19357 5.20182 5.26392 5.28065 5.43422 5.54405 5.69183 5.69584 6.14190 6.33814 6.60770 7.24009 7.42685 8.12677 8.38752 9.36296 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.004841 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.969757 B = 5782.079224 C = 6946.962121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.389 6.389 4 C 0.078 3.922 5 H 0.113 0.887 6 C -0.163 4.163 7 C 0.508 3.492 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.128 3.872 11 C 0.194 3.806 12 H 0.064 0.936 13 N -0.720 5.720 14 C -0.217 4.217 15 H 0.077 0.923 16 C -0.064 4.064 17 N -0.963 5.963 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.298 1.298 21 H -0.305 1.305 22 C -0.170 4.170 23 C -0.174 4.174 24 C -0.168 4.168 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.413 0.587 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.374 0.626 37 H 0.246 0.754 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.210 -7.333 6.578 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.308 6.308 4 C 0.017 3.983 5 H 0.131 0.869 6 C -0.221 4.221 7 C 0.294 3.706 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.004 3.996 11 C 0.085 3.915 12 H 0.081 0.919 13 N -0.360 5.360 14 C -0.349 4.349 15 H 0.095 0.905 16 C -0.256 4.256 17 N -0.614 5.614 18 Si 0.786 3.214 19 H -0.193 1.193 20 H -0.226 1.226 21 H -0.233 1.233 22 C -0.191 4.191 23 C -0.212 4.212 24 C -0.205 4.205 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.250 0.750 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.207 0.793 37 H 0.056 0.944 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.763 -6.717 6.912 13.719 hybrid contribution 1.407 -0.304 -0.985 1.744 sum -8.356 -7.021 5.927 12.419 Atomic orbital electron populations 1.21759 0.92841 1.03519 1.02467 1.22868 0.96532 0.82307 1.01479 1.88020 1.19035 1.28647 1.95144 1.21882 0.83434 0.95793 0.97206 0.86937 1.22168 1.01991 1.03715 0.94194 1.20937 0.82432 0.88284 0.78949 1.90648 1.51471 1.50798 1.52814 1.45873 1.06824 1.24169 1.58832 1.21475 0.95050 0.86143 0.96978 1.20116 0.89534 0.94615 0.87254 0.91851 1.42530 1.14295 1.76693 1.02447 1.19451 0.91244 1.32266 0.91901 0.90527 1.25266 1.00907 1.03785 0.95683 1.69802 1.37916 1.56244 0.97401 0.85347 0.81618 0.76898 0.77517 1.19273 1.22570 1.23284 1.23065 0.95063 0.98512 1.02439 1.22774 1.05292 0.96193 0.96894 1.22841 0.94289 1.03314 1.00079 0.92857 0.92452 0.88444 0.91519 0.92071 0.89093 0.93118 0.90678 0.75040 0.93286 0.90295 0.79332 0.94445 0.86837 0.90373 0.89271 0.88108 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.04 0.85 6.47 71.98 0.47 1.32 16 3 O -0.39 -11.26 9.53 -129.99 -1.24 -12.50 16 4 C 0.08 2.10 3.13 29.85 0.09 2.19 16 5 H 0.11 2.32 7.79 -2.39 -0.02 2.30 16 6 C -0.16 -4.17 9.48 71.98 0.68 -3.49 16 7 C 0.51 17.33 7.18 87.66 0.63 17.96 16 8 O -0.58 -24.42 16.51 15.97 0.26 -24.16 16 9 N -0.70 -22.64 5.35 -463.04 -2.48 -25.12 16 10 C 0.13 4.21 5.22 86.38 0.45 4.66 16 11 C 0.19 6.73 2.86 44.99 0.13 6.86 16 12 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 13 N -0.72 -31.07 3.08 -322.95 -0.99 -32.06 16 14 C -0.22 -10.45 8.15 84.03 0.69 -9.76 16 15 H 0.08 3.60 6.91 -2.91 -0.02 3.58 16 16 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 17 N -0.96 -54.39 13.06 21.65 0.28 -54.11 16 18 Si 0.95 43.27 29.55 68.60 2.03 45.30 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 22 C -0.17 -5.48 5.70 -10.79 -0.06 -5.54 16 23 C -0.17 -6.28 9.74 30.62 0.30 -5.98 16 24 C -0.17 -5.56 9.87 30.62 0.30 -5.25 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.06 7.87 -2.38 -0.02 1.04 16 29 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 30 H 0.09 1.83 7.87 -2.39 -0.02 1.81 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 2.04 7.92 -2.39 -0.02 2.02 16 33 H 0.41 12.89 7.92 -92.71 -0.73 12.15 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.38 8.14 -2.38 -0.02 2.37 16 36 H 0.37 18.20 7.80 -92.71 -0.72 17.48 16 37 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.11 3.11 8.11 -2.39 -0.02 3.10 16 39 H 0.08 3.51 6.68 -2.39 -0.02 3.50 16 40 H 0.09 2.82 8.14 -2.39 -0.02 2.81 16 41 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.08 3.02 6.22 -2.39 -0.01 3.01 16 Total: -1.00 -63.53 346.69 2.30 -61.23 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -0.45 Total: 43.08 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 4.88 Total: -1.67 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.19 Total: -111.28 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.97 Total: -36.66 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -63.53 2.30 -61.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480004750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.993 kcal (2) G-P(sol) polarization free energy of solvation -63.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds