Wall clock time and date at job start Mon Mar 30 2020 01:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47374 * 2 1 4 4 C 1.42895 * 114.00054 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47064 * 30.00804 * 4 3 2 6 6 C 1.52997 * 109.47503 * 270.00102 * 4 3 2 7 7 C 1.50706 * 109.46938 * 149.99840 * 4 3 2 8 8 O 1.21286 * 119.99650 * 5.00427 * 7 4 3 9 9 N 1.34772 * 120.00061 * 184.99917 * 7 4 3 10 10 C 1.46496 * 119.99897 * 180.02562 * 9 7 4 11 11 C 1.53011 * 109.47200 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46854 * 64.99924 * 11 10 9 13 13 N 1.46503 * 109.46893 * 305.00348 * 11 10 9 14 14 C 1.36929 * 119.99716 * 154.99961 * 13 11 10 15 15 H 1.08006 * 120.00221 * 359.97438 * 14 13 11 16 16 C 1.38812 * 120.00066 * 179.97438 * 14 13 11 17 17 N 1.31622 * 120.00346 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47283 * 89.99953 * 18 16 14 20 20 H 1.48492 * 109.47328 * 209.99921 * 18 16 14 21 21 H 1.48498 * 109.46843 * 330.00169 * 18 16 14 22 22 C 1.52995 * 109.46881 * 185.00217 * 11 10 9 23 23 C 1.53000 * 117.49624 * 248.74283 * 22 11 10 24 24 C 1.53005 * 117.49462 * 180.08936 * 22 11 10 25 25 H 1.09005 * 109.46690 * 60.00498 * 1 2 3 26 26 H 1.08999 * 109.47279 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47099 * 300.00282 * 1 2 3 28 28 H 1.09005 * 109.47213 * 239.99650 * 2 1 3 29 29 H 1.09004 * 109.47006 * 119.99942 * 2 1 3 30 30 H 1.09002 * 109.47153 * 60.00043 * 6 4 3 31 31 H 1.09001 * 109.46832 * 300.00234 * 6 4 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 6 4 3 33 33 H 0.97003 * 120.00213 * 0.02562 * 9 7 4 34 34 H 1.08998 * 109.47472 * 300.00162 * 10 9 7 35 35 H 1.09001 * 109.47455 * 60.00590 * 10 9 7 36 36 H 0.96993 * 120.00246 * 334.99606 * 13 11 10 37 37 H 0.96997 * 120.00483 * 180.02562 * 17 16 14 38 38 H 1.08995 * 115.55379 * 34.41838 * 22 11 10 39 39 H 1.08995 * 117.50304 * 0.02562 * 23 22 11 40 40 H 1.09000 * 117.49836 * 145.02649 * 23 22 11 41 41 H 1.09006 * 117.49505 * 214.97974 * 24 22 11 42 42 H 1.09002 * 117.50216 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6015 -0.5131 6 6 3.9388 1.5005 1.4432 7 6 3.8348 2.7263 -0.7099 8 8 2.9864 3.5046 -1.0913 9 7 5.1387 2.9937 -0.9214 10 6 5.5313 4.2248 -1.6115 11 6 7.0563 4.2838 -1.7214 12 1 7.4063 3.4717 -2.3587 13 7 7.6476 4.1476 -0.3879 14 6 8.9218 3.6655 -0.2501 15 1 9.4908 3.3854 -1.1243 16 6 9.4823 3.5369 1.0133 17 7 10.7069 3.0731 1.1460 18 14 8.4980 4.0207 2.5255 19 1 7.7348 2.8452 3.0163 20 1 9.4224 4.4897 3.5887 21 1 7.5542 5.1118 2.1734 22 6 7.4723 5.6248 -2.3292 23 6 8.0733 5.6066 -3.7361 24 6 8.9685 5.8781 -2.5246 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.6466 0.5847 1.9571 31 1 3.5061 2.3591 1.9568 32 1 5.0254 1.5870 1.4436 33 1 5.8172 2.3710 -0.6166 34 1 5.0947 4.2366 -2.6102 35 1 5.1737 5.0869 -1.0485 36 1 7.1365 4.3988 0.3972 37 1 11.0984 2.9829 2.0288 38 1 6.8486 6.4770 -2.0593 39 1 8.1720 4.6394 -4.2288 40 1 7.8453 6.4471 -4.3917 41 1 9.3291 6.8970 -2.3835 42 1 9.6565 5.0895 -2.2197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480004751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:06 Heat of formation + Delta-G solvation = -51.353925 kcal Electronic energy + Delta-G solvation = -21316.175168 eV Core-core repulsion = 18104.507226 eV Total energy + Delta-G solvation = -3211.667942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83693 -38.06724 -37.36026 -34.75113 -33.52752 -32.53375 -31.23679 -30.19995 -28.34063 -24.80818 -23.36664 -22.79385 -22.06835 -21.70798 -20.30265 -19.62991 -17.91194 -17.08658 -16.91825 -15.90653 -15.41118 -15.34894 -14.95987 -14.43143 -14.29111 -13.89895 -13.46240 -13.36636 -13.05338 -12.81696 -12.68677 -12.40500 -12.26141 -12.06214 -11.57212 -11.51015 -11.36387 -11.15642 -10.96817 -10.91040 -10.75431 -10.30076 -9.96831 -9.75685 -9.63065 -9.44137 -9.30247 -9.04976 -8.78034 -7.40069 -5.86236 -3.22602 2.79434 2.97947 3.29022 3.35303 3.39793 3.92575 4.38510 4.50340 4.72299 4.82802 4.91186 5.00018 5.08332 5.09800 5.17171 5.30920 5.37981 5.40416 5.53896 5.62410 5.64407 5.65919 5.72571 5.73753 5.89664 5.94212 5.97279 6.08216 6.12004 6.18285 6.46049 6.54319 6.71186 6.74514 6.97237 7.01037 7.78373 7.88163 8.31667 8.44240 9.09355 9.81938 10.01503 11.31415 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.005363 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.261566 B = 5220.107960 C = 6505.845691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.072 3.928 5 H 0.086 0.914 6 C -0.173 4.173 7 C 0.511 3.489 8 O -0.531 6.531 9 N -0.715 5.715 10 C 0.117 3.883 11 C 0.199 3.801 12 H 0.064 0.936 13 N -0.742 5.742 14 C -0.242 4.242 15 H 0.092 0.908 16 C 0.010 3.990 17 N -0.931 5.931 18 Si 0.878 3.122 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.164 4.164 23 C -0.193 4.193 24 C -0.154 4.154 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.409 0.591 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 -4.565 -3.873 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.011 3.989 5 H 0.103 0.897 6 C -0.231 4.231 7 C 0.296 3.704 8 O -0.407 6.407 9 N -0.369 5.369 10 C -0.007 4.007 11 C 0.089 3.911 12 H 0.082 0.918 13 N -0.385 5.385 14 C -0.372 4.372 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.578 5.578 18 Si 0.709 3.291 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.186 4.186 23 C -0.231 4.231 24 C -0.191 4.191 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.151 -3.954 -4.170 15.273 hybrid contribution 0.034 -0.021 1.408 1.409 sum -14.117 -3.976 -2.762 14.924 Atomic orbital electron populations 1.21721 0.93577 1.02059 1.03352 1.22579 0.95825 0.83805 1.00096 1.88043 1.18665 1.26052 1.94973 1.21879 0.83366 0.96779 0.96911 0.89669 1.22256 1.02436 1.03510 0.94864 1.20315 0.82826 0.87611 0.79670 1.90688 1.50392 1.49021 1.50646 1.45942 1.06871 1.24581 1.59530 1.21655 0.95941 0.86211 0.96897 1.20027 0.88934 0.93910 0.88239 0.91772 1.42845 1.15761 1.78332 1.01547 1.19012 0.89290 1.34675 0.94198 0.88984 1.24634 0.96053 1.01022 0.96957 1.69686 1.13927 1.51507 1.22665 0.86654 0.79665 0.78485 0.84331 1.21073 1.21816 1.20302 1.22946 0.97426 1.00497 0.97709 1.22952 1.06965 1.02090 0.91085 1.22850 0.93819 1.02517 0.99952 0.91716 0.91139 0.91802 0.93284 0.93224 0.91348 0.91163 0.90291 0.75421 0.91170 0.91779 0.80472 0.93002 0.89130 0.89399 0.90031 0.90200 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.55 6.47 37.16 0.24 0.79 16 3 O -0.36 -5.11 9.53 -55.09 -0.52 -5.63 16 4 C 0.07 0.96 3.13 -27.88 -0.09 0.87 16 5 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 6 C -0.17 -2.12 9.48 37.16 0.35 -1.77 16 7 C 0.51 8.34 7.18 -10.98 -0.08 8.26 16 8 O -0.53 -10.65 16.51 -14.31 -0.24 -10.88 16 9 N -0.72 -11.05 5.35 -60.29 -0.32 -11.37 16 10 C 0.12 1.87 5.22 -4.04 -0.02 1.85 16 11 C 0.20 3.46 2.70 -67.93 -0.18 3.28 16 12 H 0.06 1.14 7.84 -51.93 -0.41 0.73 16 13 N -0.74 -15.60 4.34 -53.42 -0.23 -15.83 16 14 C -0.24 -6.10 9.11 -15.06 -0.14 -6.24 16 15 H 0.09 2.50 7.14 -52.48 -0.37 2.12 16 16 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 17 N -0.93 -27.50 13.97 55.49 0.78 -26.73 16 18 Si 0.88 20.91 27.74 -169.99 -4.71 16.19 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 22 C -0.16 -2.73 5.36 -90.62 -0.49 -3.21 16 23 C -0.19 -2.86 10.18 -26.70 -0.27 -3.13 16 24 C -0.15 -2.70 9.78 -26.69 -0.26 -2.96 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.05 0.43 7.87 -51.93 -0.41 0.02 16 30 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.99 7.92 -51.93 -0.41 0.57 16 33 H 0.41 6.11 7.92 -40.82 -0.32 5.78 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.36 7.78 5.66 -40.82 -0.23 7.55 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 39 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.11 2.26 6.23 -51.93 -0.32 1.93 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -31.09 346.48 -7.78 -38.87 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -7.10 Total: 13.19 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.65 Total: -3.03 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.22 Total: -53.93 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.76 Total: -16.52 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.71 Total: 16.19 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.09 -7.78 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480004751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.482 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds