Wall clock time and date at job start Mon Mar 30 2020 01:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47374 * 2 1 4 4 C 1.42895 * 114.00054 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47064 * 30.00804 * 4 3 2 6 6 C 1.52997 * 109.47503 * 270.00102 * 4 3 2 7 7 C 1.50706 * 109.46938 * 149.99840 * 4 3 2 8 8 O 1.21286 * 119.99650 * 5.00427 * 7 4 3 9 9 N 1.34772 * 120.00061 * 184.99917 * 7 4 3 10 10 C 1.46496 * 119.99897 * 180.02562 * 9 7 4 11 11 C 1.53011 * 109.47200 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46854 * 64.99924 * 11 10 9 13 13 N 1.46503 * 109.46893 * 305.00348 * 11 10 9 14 14 C 1.36929 * 119.99716 * 154.99961 * 13 11 10 15 15 H 1.08006 * 120.00221 * 359.97438 * 14 13 11 16 16 C 1.38812 * 120.00066 * 179.97438 * 14 13 11 17 17 N 1.31622 * 120.00346 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47283 * 89.99953 * 18 16 14 20 20 H 1.48492 * 109.47328 * 209.99921 * 18 16 14 21 21 H 1.48498 * 109.46843 * 330.00169 * 18 16 14 22 22 C 1.52995 * 109.46881 * 185.00217 * 11 10 9 23 23 C 1.53000 * 117.49624 * 248.74283 * 22 11 10 24 24 C 1.53005 * 117.49462 * 180.08936 * 22 11 10 25 25 H 1.09005 * 109.46690 * 60.00498 * 1 2 3 26 26 H 1.08999 * 109.47279 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47099 * 300.00282 * 1 2 3 28 28 H 1.09005 * 109.47213 * 239.99650 * 2 1 3 29 29 H 1.09004 * 109.47006 * 119.99942 * 2 1 3 30 30 H 1.09002 * 109.47153 * 60.00043 * 6 4 3 31 31 H 1.09001 * 109.46832 * 300.00234 * 6 4 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 6 4 3 33 33 H 0.97003 * 120.00213 * 0.02562 * 9 7 4 34 34 H 1.08998 * 109.47472 * 300.00162 * 10 9 7 35 35 H 1.09001 * 109.47455 * 60.00590 * 10 9 7 36 36 H 0.96993 * 120.00246 * 334.99606 * 13 11 10 37 37 H 0.96997 * 120.00483 * 180.02562 * 17 16 14 38 38 H 1.08995 * 115.55379 * 34.41838 * 22 11 10 39 39 H 1.08995 * 117.50304 * 0.02562 * 23 22 11 40 40 H 1.09000 * 117.49836 * 145.02649 * 23 22 11 41 41 H 1.09006 * 117.49505 * 214.97974 * 24 22 11 42 42 H 1.09002 * 117.50216 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6015 -0.5131 6 6 3.9388 1.5005 1.4432 7 6 3.8348 2.7263 -0.7099 8 8 2.9864 3.5046 -1.0913 9 7 5.1387 2.9937 -0.9214 10 6 5.5313 4.2248 -1.6115 11 6 7.0563 4.2838 -1.7214 12 1 7.4063 3.4717 -2.3587 13 7 7.6476 4.1476 -0.3879 14 6 8.9218 3.6655 -0.2501 15 1 9.4908 3.3854 -1.1243 16 6 9.4823 3.5369 1.0133 17 7 10.7069 3.0731 1.1460 18 14 8.4980 4.0207 2.5255 19 1 7.7348 2.8452 3.0163 20 1 9.4224 4.4897 3.5887 21 1 7.5542 5.1118 2.1734 22 6 7.4723 5.6248 -2.3292 23 6 8.0733 5.6066 -3.7361 24 6 8.9685 5.8781 -2.5246 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.6466 0.5847 1.9571 31 1 3.5061 2.3591 1.9568 32 1 5.0254 1.5870 1.4436 33 1 5.8172 2.3710 -0.6166 34 1 5.0947 4.2366 -2.6102 35 1 5.1737 5.0869 -1.0485 36 1 7.1365 4.3988 0.3972 37 1 11.0984 2.9829 2.0288 38 1 6.8486 6.4770 -2.0593 39 1 8.1720 4.6394 -4.2288 40 1 7.8453 6.4471 -4.3917 41 1 9.3291 6.8970 -2.3835 42 1 9.6565 5.0895 -2.2197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480004751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:06 Heat of formation + Delta-G solvation = -71.898366 kcal Electronic energy + Delta-G solvation = -21317.066042 eV Core-core repulsion = 18104.507226 eV Total energy + Delta-G solvation = -3212.558816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06917 -39.32451 -38.57477 -36.16183 -35.22559 -33.61426 -32.88420 -31.19086 -29.82021 -26.06201 -24.91251 -23.81088 -23.33231 -23.02480 -21.65561 -21.02265 -19.65929 -18.27348 -18.08559 -17.04428 -16.87989 -16.47978 -16.19690 -16.02396 -15.67666 -15.37407 -14.71791 -14.63728 -14.39660 -14.20405 -13.96251 -13.44083 -13.21242 -13.11490 -12.98322 -12.91869 -12.73115 -12.37104 -12.30966 -12.26648 -12.09479 -12.03057 -11.64559 -11.08642 -11.00647 -10.93090 -10.83024 -10.46513 -10.09602 -9.30917 -7.95357 -5.28074 1.39787 1.43544 1.48880 1.54376 1.87847 2.52084 2.91433 3.01255 3.39681 3.62446 3.69264 3.82892 3.90571 3.98374 4.14960 4.19628 4.32614 4.33483 4.35213 4.48476 4.51528 4.56471 4.63212 4.72939 4.80091 4.87965 4.91122 5.01746 5.09922 5.14610 5.17576 5.26829 5.39655 5.43931 5.51025 5.86318 6.11115 6.26623 6.54765 7.12504 7.18747 7.86695 8.06130 9.25638 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.005363 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.261566 B = 5220.107960 C = 6505.845691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.388 6.388 4 C 0.075 3.925 5 H 0.113 0.887 6 C -0.169 4.169 7 C 0.509 3.491 8 O -0.573 6.573 9 N -0.710 5.710 10 C 0.126 3.874 11 C 0.202 3.798 12 H 0.062 0.938 13 N -0.742 5.742 14 C -0.207 4.207 15 H 0.066 0.934 16 C -0.055 4.055 17 N -0.982 5.982 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.307 1.307 21 H -0.264 1.264 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.176 4.176 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.413 0.587 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.363 0.637 37 H 0.254 0.746 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 -4.955 -4.299 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.308 6.308 4 C 0.014 3.986 5 H 0.131 0.869 6 C -0.227 4.227 7 C 0.295 3.705 8 O -0.452 6.452 9 N -0.364 5.364 10 C 0.001 3.999 11 C 0.093 3.907 12 H 0.080 0.920 13 N -0.384 5.384 14 C -0.338 4.338 15 H 0.084 0.916 16 C -0.246 4.246 17 N -0.633 5.633 18 Si 0.767 3.233 19 H -0.197 1.197 20 H -0.235 1.235 21 H -0.189 1.189 22 C -0.192 4.192 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.250 0.750 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.196 0.804 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.040 -4.346 -4.628 17.251 hybrid contribution 0.589 0.091 1.401 1.523 sum -15.451 -4.255 -3.227 16.348 Atomic orbital electron populations 1.21759 0.92866 1.03504 1.02482 1.22865 0.96506 0.82294 1.01497 1.88017 1.18975 1.28621 1.95144 1.21910 0.83546 0.95863 0.97286 0.86910 1.22237 1.02046 1.04124 0.94251 1.20928 0.82341 0.88234 0.78982 1.90664 1.51389 1.50646 1.52521 1.45927 1.06965 1.24348 1.59127 1.21537 0.94392 0.86359 0.97600 1.20126 0.89773 0.94446 0.86339 0.91983 1.42809 1.14300 1.78057 1.03247 1.18920 0.90121 1.31797 0.92944 0.91586 1.25253 0.96990 1.02541 0.99842 1.69849 1.16081 1.54561 1.22805 0.85677 0.78233 0.78834 0.80574 1.19708 1.23486 1.18900 1.22904 0.96698 1.00064 0.99577 1.23026 1.03339 1.03392 0.90153 1.22726 0.93760 1.01771 1.03067 0.92871 0.88526 0.92389 0.92127 0.91461 0.88980 0.92615 0.90529 0.74979 0.89905 0.92356 0.80380 0.93670 0.88006 0.88805 0.87322 0.89471 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.04 0.79 6.47 71.98 0.47 1.26 16 3 O -0.39 -10.41 9.53 -129.99 -1.24 -11.65 16 4 C 0.07 1.83 3.13 29.85 0.09 1.93 16 5 H 0.11 2.10 7.79 -2.39 -0.02 2.08 16 6 C -0.17 -3.76 9.48 71.98 0.68 -3.07 16 7 C 0.51 15.87 7.18 87.66 0.63 16.50 16 8 O -0.57 -22.52 16.51 15.94 0.26 -22.25 16 9 N -0.71 -20.74 5.35 -463.05 -2.48 -23.21 16 10 C 0.13 3.77 5.22 86.38 0.45 4.22 16 11 C 0.20 6.71 2.70 44.99 0.12 6.83 16 12 H 0.06 2.12 7.84 -2.39 -0.02 2.10 16 13 N -0.74 -30.39 4.34 -322.92 -1.40 -31.79 16 14 C -0.21 -10.47 9.11 84.03 0.77 -9.71 16 15 H 0.07 3.68 7.14 -2.91 -0.02 3.66 16 16 C -0.05 -2.99 5.50 84.86 0.47 -2.53 16 17 N -0.98 -59.54 13.97 21.65 0.30 -59.23 16 18 Si 0.94 43.13 27.74 68.60 1.90 45.04 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.31 -14.88 7.11 99.48 0.71 -14.18 16 21 H -0.26 -11.38 6.52 99.48 0.65 -10.73 16 22 C -0.17 -5.36 5.36 -10.79 -0.06 -5.42 16 23 C -0.16 -4.35 10.18 30.62 0.31 -4.04 16 24 C -0.18 -6.01 9.78 30.62 0.30 -5.71 16 25 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.93 8.09 -2.38 -0.02 0.91 16 29 H 0.07 0.96 7.87 -2.38 -0.02 0.94 16 30 H 0.09 1.59 7.87 -2.39 -0.02 1.58 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.73 7.92 -2.38 -0.02 1.71 16 33 H 0.41 11.56 7.92 -92.71 -0.73 10.83 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.36 14.95 5.66 -92.71 -0.52 14.43 16 37 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.10 3.00 8.11 -2.39 -0.02 2.98 16 39 H 0.09 2.44 8.05 -2.39 -0.02 2.42 16 40 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 42 H 0.07 3.12 6.23 -2.39 -0.01 3.11 16 Total: -1.00 -68.01 346.48 2.01 -66.00 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.31 Total: 38.43 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 4.97 Total: -1.33 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -3.58 Total: -114.23 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.98 Total: -33.91 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.90 Total: 45.04 kcal Total: -68.01 2.01 -66.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480004751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.897 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds