Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99839 * 2 1 4 4 H 1.08000 * 119.99583 * 203.04615 * 3 2 1 5 5 C 1.38810 * 120.00219 * 23.04989 * 3 2 1 6 6 N 1.31615 * 120.00160 * 12.92554 * 5 3 2 7 7 Si 1.86803 * 119.99776 * 192.92656 * 5 3 2 8 8 H 1.48502 * 109.47002 * 90.00154 * 7 5 3 9 9 H 1.48500 * 109.46833 * 209.99679 * 7 5 3 10 10 H 1.48497 * 109.47423 * 330.00078 * 7 5 3 11 11 C 1.46498 * 119.99941 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47344 * 89.99731 * 11 2 1 13 13 N 1.46498 * 109.47344 * 179.97438 * 12 11 2 14 14 C 1.34774 * 120.00292 * 179.97438 * 13 12 11 15 15 O 1.21282 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00320 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.47418 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47105 * 180.02562 * 17 16 14 19 19 H 1.08997 * 110.42168 * 52.68869 * 18 17 16 20 20 C 1.54482 * 110.37019 * 174.99845 * 18 17 16 21 21 C 1.54512 * 104.06355 * 142.80882 * 20 18 17 22 22 C 1.54481 * 104.18081 * 359.92825 * 21 20 18 23 23 O 1.44424 * 110.36911 * 290.37820 * 18 17 16 24 24 H 1.09004 * 109.46664 * 275.12514 * 1 2 3 25 25 H 1.09000 * 109.46976 * 35.12094 * 1 2 3 26 26 H 1.08999 * 109.47013 * 155.12160 * 1 2 3 27 27 H 0.96996 * 120.00260 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46952 * 329.99564 * 11 2 1 29 29 H 1.09005 * 109.47307 * 210.00059 * 11 2 1 30 30 H 1.09000 * 109.47232 * 60.00005 * 12 11 2 31 31 H 1.09005 * 109.47186 * 300.00402 * 12 11 2 32 32 H 0.96997 * 119.99875 * 0.02562 * 13 12 11 33 33 H 1.09000 * 109.46851 * 59.99949 * 16 14 13 34 34 H 1.08995 * 109.47417 * 300.00339 * 16 14 13 35 35 H 1.08994 * 109.47053 * 59.99777 * 17 16 14 36 36 H 1.09005 * 109.46985 * 300.00412 * 17 16 14 37 37 H 1.09000 * 110.51171 * 24.16593 * 20 18 17 38 38 H 1.09001 * 110.51302 * 261.45237 * 20 18 17 39 39 H 1.08990 * 110.51142 * 118.64280 * 21 20 18 40 40 H 1.09002 * 110.50935 * 241.22381 * 21 20 18 41 41 H 1.09000 * 110.36846 * 94.92091 * 22 21 20 42 42 H 1.08996 * 110.37411 * 217.25915 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4707 6 7 0.4119 2.2598 1.1459 7 14 2.3161 4.0073 0.1456 8 1 1.7988 4.5534 -1.1348 9 1 1.9760 4.9363 1.2532 10 1 3.7910 3.8577 0.0601 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1855 -2.9782 -1.4437 14 6 3.5220 -3.5616 -2.6112 15 8 3.2184 -3.0362 -3.6612 16 6 4.2766 -4.8661 -2.6117 17 6 4.5314 -5.3073 -4.0544 18 6 5.2969 -6.6320 -4.0549 19 1 4.7839 -7.3679 -3.4359 20 6 5.4564 -7.1604 -5.4978 21 6 6.8680 -7.7883 -5.5139 22 6 7.3980 -7.5649 -4.0801 23 8 6.6475 -6.4323 -3.5837 24 1 -0.3633 0.0918 1.0236 25 1 -0.3633 0.8406 -0.5912 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0152 3.0663 1.4745 28 1 1.6084 -2.0285 0.5130 29 1 3.1500 -1.1387 0.5133 30 1 3.0415 -0.9500 -1.9567 31 1 1.5000 -1.8399 -1.9571 32 1 3.4280 -3.3986 -0.6039 33 1 3.6885 -5.6262 -2.0975 34 1 5.2292 -4.7351 -2.0986 35 1 5.1197 -4.5471 -4.5683 36 1 3.5789 -5.4382 -4.5680 37 1 5.3948 -6.3407 -6.2137 38 1 4.7002 -7.9151 -5.7139 39 1 6.8097 -8.8534 -5.7379 40 1 7.5036 -7.2806 -6.2394 41 1 7.2086 -8.4441 -3.4643 42 1 8.4637 -7.3373 -4.1006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480843434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = -76.299745 kcal Electronic energy + Delta-G solvation = -20320.595073 eV Core-core repulsion = 17107.845399 eV Total energy + Delta-G solvation = -3212.749674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88388 -39.17324 -36.06995 -34.12955 -33.65122 -32.34093 -31.32039 -29.22726 -27.73310 -25.84589 -24.64050 -23.01252 -21.88568 -21.15396 -20.64242 -19.88091 -17.06065 -16.70961 -16.58061 -16.04330 -15.71857 -15.55218 -15.19097 -14.67595 -14.03912 -14.01237 -13.52423 -13.34431 -13.09998 -12.91883 -12.37971 -12.27936 -12.09885 -11.87448 -11.69701 -11.20646 -11.13824 -11.02932 -10.93375 -10.85642 -10.84832 -10.57336 -10.32686 -10.03924 -9.93667 -9.91000 -9.56664 -8.64981 -8.54511 -6.78189 -5.72659 -3.20838 2.91498 3.40118 3.44898 3.47059 3.50478 3.59677 4.28286 4.39409 4.52397 4.59230 4.72359 4.82726 4.90043 5.06568 5.19071 5.32446 5.36119 5.37951 5.41432 5.48821 5.58992 5.63608 5.65996 5.74207 5.84570 5.91178 5.96543 6.11909 6.28551 6.58367 6.64961 6.68856 6.78658 6.93752 7.37761 7.72104 7.81580 7.82301 8.38699 8.52778 9.22815 9.85190 10.33366 11.32211 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.002694 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.966691 B =10389.590159 C =10649.128311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.258 4.258 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.726 5.726 14 C 0.506 3.494 15 O -0.548 6.548 16 C -0.139 4.139 17 C -0.097 4.097 18 C 0.073 3.927 19 H 0.070 0.930 20 C -0.152 4.152 21 C -0.156 4.156 22 C 0.044 3.956 23 O -0.371 6.371 24 H 0.033 0.967 25 H 0.042 0.958 26 H -0.001 1.001 27 H 0.253 0.747 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.397 0.603 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 -22.104 -8.727 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.377 5.377 14 C 0.292 3.708 15 O -0.426 6.426 16 C -0.179 4.179 17 C -0.135 4.135 18 C 0.016 3.984 19 H 0.087 0.913 20 C -0.190 4.190 21 C -0.194 4.194 22 C -0.033 4.033 23 O -0.290 6.290 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.859 -21.357 -9.249 25.276 hybrid contribution 0.382 0.556 0.128 0.686 sum 10.241 -20.802 -9.121 24.915 Atomic orbital electron populations 1.20838 0.82340 0.95582 0.99597 1.43795 1.01956 1.00363 1.85991 1.19206 0.98373 0.85525 1.35682 0.91322 1.25035 0.97876 0.98628 0.98026 1.70070 1.19431 1.27271 1.38418 0.86221 0.78803 0.83913 0.77408 1.21409 1.21719 1.20419 1.20840 0.96694 0.89106 0.91828 1.22392 0.95594 0.83281 1.01927 1.46122 1.58252 1.25160 1.08152 1.20675 0.79571 0.86586 0.83956 1.90692 1.55044 1.65436 1.31420 1.21647 1.01583 0.95313 0.99355 1.21399 1.00511 0.95493 0.96053 1.23098 0.84337 0.97355 0.93625 0.91259 1.22994 0.97014 1.01167 0.97803 1.22939 0.96841 1.01504 0.98145 1.23419 0.97120 0.89634 0.93132 1.89197 1.20317 1.44067 1.75414 0.94865 0.93948 0.98284 0.93700 0.94135 0.92959 0.91685 0.92371 0.77003 0.89241 0.88445 0.90187 0.89821 0.90247 0.90495 0.90697 0.90695 0.92368 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.98 59.85 0.54 4.57 16 2 N -0.60 -15.26 2.92 -181.12 -0.53 -15.79 16 3 C -0.26 -7.21 9.65 -15.06 -0.15 -7.36 16 4 H 0.07 1.88 7.86 -52.49 -0.41 1.47 16 5 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 6 N -0.91 -26.73 10.71 55.49 0.59 -26.14 16 7 Si 0.91 22.23 29.57 -169.99 -5.03 17.20 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.14 2.90 5.76 -4.05 -0.02 2.88 16 12 C 0.09 1.77 6.00 -4.05 -0.02 1.75 16 13 N -0.73 -10.74 5.56 -60.30 -0.33 -11.07 16 14 C 0.51 7.69 7.83 -10.99 -0.09 7.61 16 15 O -0.55 -10.69 15.98 5.56 0.09 -10.60 16 16 C -0.14 -1.49 5.64 -27.88 -0.16 -1.64 16 17 C -0.10 -1.03 4.13 -26.73 -0.11 -1.14 16 18 C 0.07 0.64 3.25 -25.95 -0.08 0.56 16 19 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 20 C -0.15 -1.11 6.63 -25.16 -0.17 -1.27 16 21 C -0.16 -0.99 7.08 -25.16 -0.18 -1.16 16 22 C 0.04 0.32 7.65 37.93 0.29 0.61 16 23 O -0.37 -3.84 11.13 -35.23 -0.39 -4.24 16 24 H 0.03 0.89 7.34 -51.93 -0.38 0.50 16 25 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 26 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 27 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 30 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.40 4.56 8.47 -40.82 -0.35 4.22 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.99 8.01 -51.93 -0.42 0.58 16 35 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -33.34 343.72 -8.04 -41.37 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.38 Total: -1.31 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.24 Total: 5.38 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.27 Total: -52.99 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.30 Total: -14.83 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.34 -8.04 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480843434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.925 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds