Wall clock time and date at job start Mon Mar 30 2020 01:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99839 * 2 1 4 4 H 1.08000 * 119.99583 * 203.04615 * 3 2 1 5 5 C 1.38810 * 120.00219 * 23.04989 * 3 2 1 6 6 N 1.31615 * 120.00160 * 12.92554 * 5 3 2 7 7 Si 1.86803 * 119.99776 * 192.92656 * 5 3 2 8 8 H 1.48502 * 109.47002 * 90.00154 * 7 5 3 9 9 H 1.48500 * 109.46833 * 209.99679 * 7 5 3 10 10 H 1.48497 * 109.47423 * 330.00078 * 7 5 3 11 11 C 1.46498 * 119.99941 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47344 * 89.99731 * 11 2 1 13 13 N 1.46498 * 109.47344 * 179.97438 * 12 11 2 14 14 C 1.34774 * 120.00292 * 179.97438 * 13 12 11 15 15 O 1.21282 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00320 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.47418 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47105 * 180.02562 * 17 16 14 19 19 H 1.08997 * 110.42168 * 52.68869 * 18 17 16 20 20 C 1.54482 * 110.37019 * 174.99845 * 18 17 16 21 21 C 1.54512 * 104.06355 * 142.80882 * 20 18 17 22 22 C 1.54481 * 104.18081 * 359.92825 * 21 20 18 23 23 O 1.44424 * 110.36911 * 290.37820 * 18 17 16 24 24 H 1.09004 * 109.46664 * 275.12514 * 1 2 3 25 25 H 1.09000 * 109.46976 * 35.12094 * 1 2 3 26 26 H 1.08999 * 109.47013 * 155.12160 * 1 2 3 27 27 H 0.96996 * 120.00260 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46952 * 329.99564 * 11 2 1 29 29 H 1.09005 * 109.47307 * 210.00059 * 11 2 1 30 30 H 1.09000 * 109.47232 * 60.00005 * 12 11 2 31 31 H 1.09005 * 109.47186 * 300.00402 * 12 11 2 32 32 H 0.96997 * 119.99875 * 0.02562 * 13 12 11 33 33 H 1.09000 * 109.46851 * 59.99949 * 16 14 13 34 34 H 1.08995 * 109.47417 * 300.00339 * 16 14 13 35 35 H 1.08994 * 109.47053 * 59.99777 * 17 16 14 36 36 H 1.09005 * 109.46985 * 300.00412 * 17 16 14 37 37 H 1.09000 * 110.51171 * 24.16593 * 20 18 17 38 38 H 1.09001 * 110.51302 * 261.45237 * 20 18 17 39 39 H 1.08990 * 110.51142 * 118.64280 * 21 20 18 40 40 H 1.09002 * 110.50935 * 241.22381 * 21 20 18 41 41 H 1.09000 * 110.36846 * 94.92091 * 22 21 20 42 42 H 1.08996 * 110.37411 * 217.25915 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4707 6 7 0.4119 2.2598 1.1459 7 14 2.3161 4.0073 0.1456 8 1 1.7988 4.5534 -1.1348 9 1 1.9760 4.9363 1.2532 10 1 3.7910 3.8577 0.0601 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1855 -2.9782 -1.4437 14 6 3.5220 -3.5616 -2.6112 15 8 3.2184 -3.0362 -3.6612 16 6 4.2766 -4.8661 -2.6117 17 6 4.5314 -5.3073 -4.0544 18 6 5.2969 -6.6320 -4.0549 19 1 4.7839 -7.3679 -3.4359 20 6 5.4564 -7.1604 -5.4978 21 6 6.8680 -7.7883 -5.5139 22 6 7.3980 -7.5649 -4.0801 23 8 6.6475 -6.4323 -3.5837 24 1 -0.3633 0.0918 1.0236 25 1 -0.3633 0.8406 -0.5912 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0152 3.0663 1.4745 28 1 1.6084 -2.0285 0.5130 29 1 3.1500 -1.1387 0.5133 30 1 3.0415 -0.9500 -1.9567 31 1 1.5000 -1.8399 -1.9571 32 1 3.4280 -3.3986 -0.6039 33 1 3.6885 -5.6262 -2.0975 34 1 5.2292 -4.7351 -2.0986 35 1 5.1197 -4.5471 -4.5683 36 1 3.5789 -5.4382 -4.5680 37 1 5.3948 -6.3407 -6.2137 38 1 4.7002 -7.9151 -5.7139 39 1 6.8097 -8.8534 -5.7379 40 1 7.5036 -7.2806 -6.2394 41 1 7.2086 -8.4441 -3.4643 42 1 8.4637 -7.3373 -4.1006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480843434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:56 Heat of formation + Delta-G solvation = -99.287176 kcal Electronic energy + Delta-G solvation = -20321.591883 eV Core-core repulsion = 17107.845399 eV Total energy + Delta-G solvation = -3213.746484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85526 -40.12152 -37.87841 -35.70655 -34.54758 -33.28936 -32.91421 -30.41397 -28.97732 -27.92504 -25.75584 -24.43329 -22.62400 -22.36342 -21.81176 -21.15891 -18.79851 -18.01102 -17.44535 -17.12388 -16.81233 -16.55903 -16.39568 -16.24384 -15.57960 -15.19972 -14.82482 -14.57519 -14.54005 -14.15932 -13.78265 -13.69954 -13.05520 -12.81958 -12.76523 -12.68014 -12.57640 -12.49593 -12.30820 -12.18672 -11.98005 -11.88257 -11.79633 -11.78864 -11.45885 -10.90502 -10.66560 -10.66240 -10.04354 -8.85140 -7.86357 -5.36943 1.44921 1.47245 1.55409 1.69543 2.22104 2.52283 2.99589 3.27374 3.61071 3.76197 3.80068 3.92360 4.07664 4.12907 4.18325 4.23517 4.29363 4.43262 4.52254 4.60358 4.66809 4.76814 4.78773 4.81873 4.87538 5.00506 5.04315 5.09947 5.11931 5.14176 5.19497 5.29230 5.33033 5.52523 5.60795 5.68117 5.98231 6.29688 6.63876 7.11340 7.33234 7.81839 8.24534 9.16778 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.002694 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.966691 B =10389.590159 C =10649.128311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.618 5.618 3 C -0.268 4.268 4 H 0.068 0.932 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.268 1.268 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.714 5.714 14 C 0.503 3.497 15 O -0.596 6.596 16 C -0.126 4.126 17 C -0.096 4.096 18 C 0.075 3.925 19 H 0.089 0.911 20 C -0.155 4.155 21 C -0.154 4.154 22 C 0.037 3.963 23 O -0.399 6.399 24 H 0.012 0.988 25 H 0.013 0.987 26 H 0.031 0.969 27 H 0.250 0.750 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.416 0.584 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.251 -24.273 -8.580 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.398 4.398 4 H 0.086 0.914 5 C -0.247 4.247 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.193 1.193 11 C 0.020 3.980 12 C -0.013 4.013 13 N -0.367 5.367 14 C 0.291 3.709 15 O -0.477 6.477 16 C -0.165 4.165 17 C -0.134 4.134 18 C 0.018 3.982 19 H 0.107 0.893 20 C -0.192 4.192 21 C -0.191 4.191 22 C -0.039 4.039 23 O -0.319 6.319 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.253 0.747 33 H 0.142 0.858 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.006 -23.583 -9.085 27.565 hybrid contribution 0.066 1.152 0.053 1.155 sum 11.073 -22.431 -9.032 26.596 Atomic orbital electron populations 1.20601 0.82529 0.95986 0.98011 1.44046 1.02303 1.01606 1.86178 1.19489 0.98490 0.86858 1.34925 0.91376 1.25796 0.98626 1.01909 0.98332 1.70215 1.20691 1.27760 1.39558 0.85245 0.78457 0.79772 0.76843 1.21553 1.21702 1.19302 1.20952 0.96828 0.87603 0.92583 1.21825 0.94761 0.84396 1.00293 1.45925 1.57608 1.23739 1.09388 1.21521 0.78821 0.87587 0.82964 1.90677 1.56923 1.66937 1.33153 1.21652 1.01715 0.93211 0.99934 1.21360 1.00275 0.96024 0.95698 1.23120 0.83838 0.96362 0.94865 0.89307 1.23024 0.98264 1.01282 0.96663 1.22946 0.95977 1.02606 0.97610 1.23617 0.97228 0.89302 0.93760 1.89159 1.21152 1.45639 1.75922 0.96932 0.96834 0.95003 0.94102 0.91521 0.92358 0.94784 0.93893 0.74667 0.85820 0.87352 0.92886 0.90147 0.91496 0.88821 0.88754 0.90956 0.90884 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.72 8.98 127.77 1.15 9.87 16 2 N -0.62 -31.39 2.92 -726.93 -2.12 -33.51 16 3 C -0.27 -14.97 9.65 84.03 0.81 -14.16 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -2.92 5.10 84.86 0.43 -2.49 16 6 N -0.94 -55.92 10.71 21.65 0.23 -55.69 16 7 Si 0.97 46.00 29.57 68.60 2.03 48.03 16 8 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 C 0.15 5.73 5.76 86.38 0.50 6.23 16 12 C 0.11 4.25 6.00 86.38 0.52 4.77 16 13 N -0.71 -19.89 5.56 -463.07 -2.57 -22.47 16 14 C 0.50 14.70 7.83 87.66 0.69 15.39 16 15 O -0.60 -23.43 15.98 -3.04 -0.05 -23.47 16 16 C -0.13 -2.40 5.64 29.85 0.17 -2.23 16 17 C -0.10 -1.93 4.13 30.59 0.13 -1.80 16 18 C 0.08 1.17 3.25 31.10 0.10 1.27 16 19 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 20 C -0.15 -1.98 6.63 31.61 0.21 -1.77 16 21 C -0.15 -1.61 7.08 31.61 0.22 -1.39 16 22 C 0.04 0.46 7.65 72.49 0.55 1.01 16 23 O -0.40 -7.56 11.13 -148.98 -1.66 -9.22 16 24 H 0.01 0.67 7.34 -2.39 -0.02 0.65 16 25 H 0.01 0.72 7.34 -2.39 -0.02 0.70 16 26 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 27 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 29 H 0.06 2.20 8.04 -2.38 -0.02 2.19 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.42 8.36 8.47 -92.71 -0.79 7.58 16 33 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.92 8.01 -2.39 -0.02 1.90 16 35 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 36 H 0.08 1.65 8.10 -2.38 -0.02 1.63 16 37 H 0.07 1.01 7.87 -2.39 -0.02 0.99 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -73.01 343.72 1.53 -71.48 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.20 Total: 10.17 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 5.48 Total: 14.68 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -4.46 Total: -111.67 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.71 Total: -32.70 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -73.01 1.53 -71.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480843434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.807 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds