Wall clock time and date at job start Mon Mar 30 2020 01:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47642 * 2 1 4 4 C 1.42895 * 114.00381 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47254 * 29.99681 * 4 3 2 6 6 C 1.52999 * 109.47281 * 269.99815 * 4 3 2 7 7 C 1.50702 * 109.47238 * 149.99862 * 4 3 2 8 8 O 1.21277 * 120.00065 * 4.99890 * 7 4 3 9 9 N 1.34784 * 119.99909 * 185.00041 * 7 4 3 10 10 C 1.46492 * 120.00058 * 0.02562 * 9 7 4 11 11 C 1.46501 * 119.99595 * 179.97438 * 9 7 4 12 12 H 1.08993 * 110.78199 * 356.76455 * 11 9 7 13 13 C 1.55157 * 110.71624 * 119.99916 * 11 9 7 14 14 C 1.54918 * 101.58155 * 153.86110 * 13 11 9 15 15 N 1.47425 * 104.82827 * 322.99497 * 14 13 11 16 16 C 1.36938 * 125.64303 * 204.16846 * 15 14 13 17 17 H 1.08000 * 120.00302 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99963 * 359.94942 * 16 15 14 19 19 N 1.31611 * 120.00219 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99684 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47183 * 119.99888 * 20 18 16 23 23 H 1.48501 * 109.47046 * 239.99995 * 20 18 16 24 24 C 1.47015 * 108.70882 * 24.12597 * 15 14 13 25 25 H 1.09006 * 109.46544 * 60.00434 * 1 2 3 26 26 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47340 * 300.00230 * 1 2 3 28 28 H 1.09006 * 109.47198 * 239.99305 * 2 1 3 29 29 H 1.09004 * 109.47191 * 119.99946 * 2 1 3 30 30 H 1.09002 * 109.46868 * 300.00103 * 6 4 3 31 31 H 1.08999 * 109.46815 * 59.99933 * 6 4 3 32 32 H 1.08999 * 109.47506 * 179.97438 * 6 4 3 33 33 H 1.09010 * 109.47251 * 269.99975 * 10 9 7 34 34 H 1.09000 * 109.47631 * 29.99914 * 10 9 7 35 35 H 1.09001 * 109.47217 * 149.99958 * 10 9 7 36 36 H 1.09001 * 111.00846 * 271.93819 * 13 11 9 37 37 H 1.09000 * 111.00346 * 35.79350 * 13 11 9 38 38 H 1.08999 * 110.35942 * 81.82689 * 14 13 11 39 39 H 1.08996 * 110.36556 * 204.15522 * 14 13 11 40 40 H 0.97005 * 120.00154 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.88350 * 239.52260 * 24 15 14 42 42 H 1.08997 * 110.01690 * 118.42776 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6013 -0.5129 6 6 3.9387 1.5005 1.4433 7 6 3.8349 2.7261 -0.7099 8 8 2.9867 3.5044 -1.0914 9 7 5.1389 2.9935 -0.9213 10 6 6.1635 2.0531 -0.4611 11 6 5.5315 4.2241 -1.6125 12 1 4.6535 4.7817 -1.9382 13 6 6.4324 5.1009 -0.7031 14 6 7.2466 5.9009 -1.7503 15 7 7.4926 4.9463 -2.8465 16 6 8.5202 5.0150 -3.7490 17 1 8.6144 4.2630 -4.5184 18 6 9.4406 6.0515 -3.6752 19 7 9.3253 6.9686 -2.7383 20 14 10.8428 6.1447 -4.9059 21 1 10.7496 5.0023 -5.8500 22 1 10.7545 7.4202 -5.6613 23 1 12.1394 6.0854 -4.1844 24 6 6.4526 3.9079 -2.8097 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5060 2.3591 1.9567 31 1 3.6466 0.5847 1.9571 32 1 5.0254 1.5861 1.4438 33 1 6.4632 2.3108 0.5548 34 1 5.7600 1.0406 -0.4750 35 1 7.0297 2.1081 -1.1204 36 1 5.8317 5.7668 -0.0834 37 1 7.0869 4.4826 -0.0887 38 1 6.6685 6.7518 -2.1108 39 1 8.1904 6.2369 -1.3209 40 1 9.9687 7.6927 -2.6865 41 1 6.9114 2.9283 -2.6758 42 1 5.8765 3.9239 -3.7349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481715348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:51 Heat of formation + Delta-G solvation = -45.180382 kcal Electronic energy + Delta-G solvation = -21621.184621 eV Core-core repulsion = 18409.784384 eV Total energy + Delta-G solvation = -3211.400238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20237 -38.19534 -37.01971 -34.91025 -32.80772 -31.86355 -30.27643 -29.16994 -27.42087 -26.81222 -24.91173 -23.88902 -22.86802 -20.52696 -20.21112 -18.81808 -17.44590 -17.06191 -16.67067 -16.03058 -15.79635 -14.99362 -14.75125 -14.25957 -14.05162 -13.88301 -13.36741 -13.09134 -12.88138 -12.69648 -12.49618 -12.34211 -12.19603 -11.95599 -11.79100 -11.56949 -11.46072 -11.25801 -11.02928 -10.83392 -10.82657 -10.42802 -10.10186 -9.97948 -9.82386 -9.57048 -9.31127 -8.68197 -8.34795 -6.86513 -5.67558 -3.10088 2.72938 2.81592 3.38414 3.43975 3.46511 3.72796 4.45302 4.48424 4.66153 4.75678 4.90283 4.99946 5.10838 5.13923 5.28051 5.37525 5.40499 5.46027 5.51606 5.54406 5.60197 5.67231 5.71140 5.75620 5.87778 5.91279 5.97731 6.26242 6.33413 6.53613 6.56815 6.70879 6.86166 7.05996 7.48830 7.58227 7.61360 7.82713 8.31350 8.35674 9.19041 9.79645 10.43885 11.36137 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.044882 B = 0.003678 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.703258 B = 7611.990356 C = 7684.415684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.084 0.916 6 C -0.177 4.177 7 C 0.513 3.487 8 O -0.524 6.524 9 N -0.599 5.599 10 C 0.069 3.931 11 C 0.127 3.873 12 H 0.103 0.897 13 C -0.151 4.151 14 C 0.153 3.847 15 N -0.602 5.602 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.129 3.871 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.110 0.890 40 H 0.252 0.748 41 H 0.029 0.971 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 -14.847 8.958 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.012 3.988 5 H 0.102 0.898 6 C -0.234 4.234 7 C 0.299 3.701 8 O -0.399 6.399 9 N -0.333 5.333 10 C -0.074 4.074 11 C 0.024 3.976 12 H 0.121 0.879 13 C -0.190 4.190 14 C 0.028 3.972 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.002 3.998 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.127 0.873 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.700 -14.144 8.686 19.748 hybrid contribution 0.927 -0.239 -0.628 1.145 sum -9.773 -14.383 8.058 19.166 Atomic orbital electron populations 1.21724 0.93496 1.02090 1.03459 1.22575 0.95937 0.83751 0.99966 1.88057 1.18606 1.26075 1.94941 1.21873 0.83386 0.96747 0.96782 0.89838 1.22366 1.02634 1.03493 0.94939 1.20314 0.82440 0.87592 0.79739 1.90698 1.49807 1.48973 1.50422 1.47780 1.05170 1.22645 1.57665 1.21968 0.93053 0.91857 1.00491 1.22248 0.98374 0.83890 0.93120 0.87872 1.23367 0.98155 0.98809 0.98716 1.21946 0.99429 0.89831 0.85989 1.44445 1.27876 1.26422 1.34134 1.19114 1.01237 1.08146 1.06583 0.90405 1.24798 0.99502 0.97178 0.99140 1.69797 1.37529 1.15206 1.34444 0.85987 0.81832 0.77422 0.80175 1.20531 1.21715 1.21736 1.21529 0.90290 0.93321 0.94691 0.91620 0.91118 0.91771 0.93312 0.93319 0.91107 0.91495 0.90115 0.92201 0.91575 0.89543 0.92072 0.91790 0.96701 0.87274 0.93713 0.95298 0.95694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.87 9.53 -55.09 -0.52 -5.40 16 4 C 0.07 0.89 2.32 -27.88 -0.06 0.83 16 5 H 0.08 0.81 6.77 -51.93 -0.35 0.46 16 6 C -0.18 -1.70 9.25 37.16 0.34 -1.35 16 7 C 0.51 8.38 7.10 -10.98 -0.08 8.30 16 8 O -0.52 -10.88 15.88 -14.30 -0.23 -11.11 16 9 N -0.60 -9.33 2.89 -171.84 -0.50 -9.83 16 10 C 0.07 0.81 7.78 59.84 0.47 1.28 16 11 C 0.13 2.40 3.35 -66.09 -0.22 2.18 16 12 H 0.10 2.15 7.01 -51.93 -0.36 1.79 16 13 C -0.15 -2.92 6.66 -24.58 -0.16 -3.09 16 14 C 0.15 3.73 5.89 -2.52 -0.01 3.72 16 15 N -0.60 -15.40 3.39 -170.07 -0.58 -15.97 16 16 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 20 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.13 2.73 6.80 -3.07 -0.02 2.71 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.05 0.36 7.87 -51.93 -0.41 -0.05 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.50 7.87 -51.93 -0.41 0.10 16 32 H 0.08 0.68 5.12 -51.93 -0.27 0.41 16 33 H 0.06 0.62 6.96 -51.92 -0.36 0.26 16 34 H 0.07 0.58 6.08 -51.93 -0.32 0.26 16 35 H 0.09 1.14 6.08 -51.93 -0.32 0.82 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.17 7.29 -51.93 -0.38 0.79 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 2.95 5.87 -51.93 -0.31 2.65 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.58 5.93 -51.93 -0.31 0.27 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -33.09 328.40 -7.43 -40.52 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.71 Total: -1.70 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 0.62 Total: 7.76 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.51 Total: -51.90 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.75 Total: -16.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.09 -7.43 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481715348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.661 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds