Wall clock time and date at job start Mon Mar 30 2020 01:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47642 * 2 1 4 4 C 1.42895 * 114.00381 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47254 * 29.99681 * 4 3 2 6 6 C 1.52999 * 109.47281 * 269.99815 * 4 3 2 7 7 C 1.50702 * 109.47238 * 149.99862 * 4 3 2 8 8 O 1.21277 * 120.00065 * 4.99890 * 7 4 3 9 9 N 1.34784 * 119.99909 * 185.00041 * 7 4 3 10 10 C 1.46492 * 120.00058 * 0.02562 * 9 7 4 11 11 C 1.46501 * 119.99595 * 179.97438 * 9 7 4 12 12 H 1.08993 * 110.78199 * 356.76455 * 11 9 7 13 13 C 1.55157 * 110.71624 * 119.99916 * 11 9 7 14 14 C 1.54918 * 101.58155 * 153.86110 * 13 11 9 15 15 N 1.47425 * 104.82827 * 322.99497 * 14 13 11 16 16 C 1.36938 * 125.64303 * 204.16846 * 15 14 13 17 17 H 1.08000 * 120.00302 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99963 * 359.94942 * 16 15 14 19 19 N 1.31611 * 120.00219 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99684 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47183 * 119.99888 * 20 18 16 23 23 H 1.48501 * 109.47046 * 239.99995 * 20 18 16 24 24 C 1.47015 * 108.70882 * 24.12597 * 15 14 13 25 25 H 1.09006 * 109.46544 * 60.00434 * 1 2 3 26 26 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47340 * 300.00230 * 1 2 3 28 28 H 1.09006 * 109.47198 * 239.99305 * 2 1 3 29 29 H 1.09004 * 109.47191 * 119.99946 * 2 1 3 30 30 H 1.09002 * 109.46868 * 300.00103 * 6 4 3 31 31 H 1.08999 * 109.46815 * 59.99933 * 6 4 3 32 32 H 1.08999 * 109.47506 * 179.97438 * 6 4 3 33 33 H 1.09010 * 109.47251 * 269.99975 * 10 9 7 34 34 H 1.09000 * 109.47631 * 29.99914 * 10 9 7 35 35 H 1.09001 * 109.47217 * 149.99958 * 10 9 7 36 36 H 1.09001 * 111.00846 * 271.93819 * 13 11 9 37 37 H 1.09000 * 111.00346 * 35.79350 * 13 11 9 38 38 H 1.08999 * 110.35942 * 81.82689 * 14 13 11 39 39 H 1.08996 * 110.36556 * 204.15522 * 14 13 11 40 40 H 0.97005 * 120.00154 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.88350 * 239.52260 * 24 15 14 42 42 H 1.08997 * 110.01690 * 118.42776 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6013 -0.5129 6 6 3.9387 1.5005 1.4433 7 6 3.8349 2.7261 -0.7099 8 8 2.9867 3.5044 -1.0914 9 7 5.1389 2.9935 -0.9213 10 6 6.1635 2.0531 -0.4611 11 6 5.5315 4.2241 -1.6125 12 1 4.6535 4.7817 -1.9382 13 6 6.4324 5.1009 -0.7031 14 6 7.2466 5.9009 -1.7503 15 7 7.4926 4.9463 -2.8465 16 6 8.5202 5.0150 -3.7490 17 1 8.6144 4.2630 -4.5184 18 6 9.4406 6.0515 -3.6752 19 7 9.3253 6.9686 -2.7383 20 14 10.8428 6.1447 -4.9059 21 1 10.7496 5.0023 -5.8500 22 1 10.7545 7.4202 -5.6613 23 1 12.1394 6.0854 -4.1844 24 6 6.4526 3.9079 -2.8097 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5060 2.3591 1.9567 31 1 3.6466 0.5847 1.9571 32 1 5.0254 1.5861 1.4438 33 1 6.4632 2.3108 0.5548 34 1 5.7600 1.0406 -0.4750 35 1 7.0297 2.1081 -1.1204 36 1 5.8317 5.7668 -0.0834 37 1 7.0869 4.4826 -0.0887 38 1 6.6685 6.7518 -2.1108 39 1 8.1904 6.2369 -1.3209 40 1 9.9687 7.6927 -2.6865 41 1 6.9114 2.9283 -2.6758 42 1 5.8765 3.9239 -3.7349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481715348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:51 Heat of formation + Delta-G solvation = -66.690472 kcal Electronic energy + Delta-G solvation = -21622.117369 eV Core-core repulsion = 18409.784384 eV Total energy + Delta-G solvation = -3212.332985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44266 -39.43328 -38.41916 -36.38130 -34.33005 -33.09909 -31.35310 -30.79757 -29.01873 -27.97042 -26.61361 -25.11186 -23.61090 -22.14232 -21.89077 -20.16538 -18.98584 -18.54195 -17.77589 -17.32493 -16.74157 -16.60373 -16.13642 -15.82774 -15.61054 -14.83757 -14.70383 -14.30943 -14.17142 -13.85226 -13.69189 -13.41357 -13.37606 -13.15799 -13.09244 -12.98044 -12.74360 -12.69134 -12.38561 -12.24755 -12.20920 -11.97949 -11.95566 -11.81834 -11.40262 -10.91528 -10.77555 -10.44086 -9.67922 -8.92766 -7.78515 -5.24548 1.47781 1.49166 1.51034 1.59313 1.68068 2.49476 2.83289 3.32080 3.42930 3.69846 3.83167 3.87508 3.94024 4.02351 4.20474 4.21655 4.25476 4.34799 4.50233 4.55372 4.58492 4.62901 4.67124 4.79319 4.82255 4.89623 4.96128 4.99368 5.04230 5.06728 5.25201 5.28127 5.45044 5.52604 5.56038 5.75977 6.13021 6.27186 6.41609 7.07916 7.10555 7.73861 8.37778 9.23568 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.044882 B = 0.003678 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.703258 B = 7611.990356 C = 7684.415684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.395 6.395 4 C 0.079 3.921 5 H 0.117 0.883 6 C -0.170 4.170 7 C 0.505 3.495 8 O -0.580 6.580 9 N -0.595 5.595 10 C 0.061 3.939 11 C 0.140 3.860 12 H 0.078 0.922 13 C -0.131 4.131 14 C 0.157 3.843 15 N -0.621 5.621 16 C -0.239 4.239 17 H 0.083 0.917 18 C -0.065 4.065 19 N -0.949 5.949 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.288 1.288 24 C 0.130 3.870 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.083 0.917 38 H -0.017 1.017 39 H 0.083 0.917 40 H 0.248 0.752 41 H 0.051 0.949 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 -17.872 9.960 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.314 6.314 4 C 0.018 3.982 5 H 0.134 0.866 6 C -0.228 4.228 7 C 0.294 3.706 8 O -0.459 6.459 9 N -0.328 5.328 10 C -0.080 4.080 11 C 0.035 3.965 12 H 0.096 0.904 13 C -0.170 4.170 14 C 0.031 3.969 15 N -0.348 5.348 16 C -0.368 4.368 17 H 0.101 0.899 18 C -0.258 4.258 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.214 1.214 24 C 0.004 3.996 25 H 0.066 0.934 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.001 0.999 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -10.273 -17.228 9.705 22.282 hybrid contribution 0.734 0.672 -0.957 1.381 sum -9.539 -16.555 8.748 21.014 Atomic orbital electron populations 1.21774 0.93257 1.03480 1.02329 1.22850 0.96273 0.82175 1.01641 1.88029 1.19406 1.28794 1.95192 1.21960 0.83346 0.94872 0.98005 0.86605 1.22364 1.03360 1.04102 0.92948 1.21277 0.81785 0.88591 0.78938 1.90671 1.51309 1.51135 1.52780 1.47785 1.06158 1.21889 1.56932 1.22294 0.91692 0.92927 1.01057 1.21767 0.96703 0.85508 0.92509 0.90364 1.23149 0.97772 0.98540 0.97529 1.21716 0.98375 0.89786 0.87007 1.44703 1.28429 1.27477 1.34177 1.19482 1.01838 1.08332 1.07112 0.89933 1.25654 1.02029 0.97012 1.01081 1.70034 1.38241 1.15612 1.35943 0.84943 0.78577 0.77329 0.78034 1.19042 1.22249 1.21447 1.21612 0.89667 0.93173 0.95183 0.93370 0.88439 0.92310 0.92316 0.90753 0.93056 0.88696 0.88531 0.90096 0.87660 0.90810 0.90918 0.89881 0.99933 0.89918 0.94197 0.93130 0.96933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.73 6.47 71.98 0.47 1.20 16 3 O -0.39 -10.03 9.53 -129.99 -1.24 -11.27 16 4 C 0.08 1.68 2.32 29.85 0.07 1.75 16 5 H 0.12 1.69 6.77 -2.39 -0.02 1.68 16 6 C -0.17 -2.62 9.25 71.98 0.67 -1.95 16 7 C 0.51 15.89 7.10 87.66 0.62 16.52 16 8 O -0.58 -24.53 15.88 15.97 0.25 -24.27 16 9 N -0.59 -17.48 2.89 -815.96 -2.35 -19.83 16 10 C 0.06 1.21 7.78 127.77 0.99 2.21 16 11 C 0.14 5.30 3.35 46.18 0.15 5.45 16 12 H 0.08 3.38 7.01 -2.39 -0.02 3.36 16 13 C -0.13 -5.02 6.66 31.99 0.21 -4.81 16 14 C 0.16 7.87 5.89 86.86 0.51 8.38 16 15 N -0.62 -32.27 3.39 -691.99 -2.35 -34.62 16 16 C -0.24 -13.34 10.27 84.03 0.86 -12.47 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 18 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 19 N -0.95 -56.29 10.09 21.65 0.22 -56.07 16 20 Si 0.98 45.25 29.55 68.60 2.03 47.27 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 24 C 0.13 5.51 6.80 86.73 0.59 6.10 16 25 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.80 8.09 -2.38 -0.02 0.78 16 29 H 0.07 0.79 7.87 -2.38 -0.02 0.77 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 0.96 7.87 -2.39 -0.02 0.94 16 32 H 0.10 1.16 5.12 -2.39 -0.01 1.15 16 33 H 0.08 1.31 6.96 -2.38 -0.02 1.29 16 34 H 0.11 1.28 6.08 -2.39 -0.01 1.26 16 35 H 0.07 1.70 6.08 -2.39 -0.01 1.69 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.08 2.88 7.29 -2.39 -0.02 2.87 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.08 4.63 5.87 -2.39 -0.01 4.61 16 40 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 41 H 0.05 1.95 5.93 -2.39 -0.01 1.94 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -75.25 328.40 3.91 -71.34 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.00 Total: 9.77 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 6.36 Total: 17.68 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -4.48 Total: -110.52 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.98 Total: -35.54 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.25 3.91 -71.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481715348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.650 kcal (2) G-P(sol) polarization free energy of solvation -75.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds