Wall clock time and date at job start Mon Mar 30 2020 00:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47135 * 2 1 4 4 C 1.34779 * 120.00039 * 95.10403 * 3 2 1 5 5 O 1.21276 * 120.00005 * 186.30067 * 4 3 2 6 6 C 1.50704 * 119.99848 * 6.02200 * 4 3 2 7 7 H 1.09002 * 109.47029 * 42.49092 * 6 4 3 8 8 C 1.53000 * 109.47187 * 282.49409 * 6 4 3 9 9 O 1.42897 * 109.47188 * 162.49234 * 6 4 3 10 10 C 1.42896 * 113.99862 * 210.00187 * 9 6 4 11 11 C 1.46503 * 120.00370 * 275.10317 * 3 2 1 12 12 H 1.09004 * 110.63479 * 16.61587 * 11 3 2 13 13 C 1.55154 * 110.72431 * 253.27733 * 11 3 2 14 14 C 1.54912 * 101.57981 * 277.13801 * 13 11 3 15 15 N 1.47419 * 104.83015 * 322.98840 * 14 13 11 16 16 C 1.36941 * 125.64489 * 204.16439 * 15 14 13 17 17 H 1.08001 * 120.00090 * 329.65684 * 16 15 14 18 18 C 1.38808 * 119.99834 * 149.66174 * 16 15 14 19 19 N 1.31621 * 119.99890 * 164.11685 * 18 16 15 20 20 Si 1.86795 * 120.00212 * 344.11431 * 18 16 15 21 21 H 1.48497 * 109.47020 * 84.85429 * 20 18 16 22 22 H 1.48501 * 109.47503 * 204.85458 * 20 18 16 23 23 H 1.48498 * 109.47040 * 324.85719 * 20 18 16 24 24 C 1.47017 * 108.70426 * 24.13220 * 15 14 13 25 25 H 1.09003 * 109.47088 * 191.23925 * 1 2 3 26 26 H 1.09004 * 109.47022 * 311.23368 * 1 2 3 27 27 H 1.09000 * 109.47459 * 71.22996 * 1 2 3 28 28 H 1.09002 * 109.46658 * 240.00731 * 2 1 3 29 29 H 1.08999 * 109.47827 * 120.00338 * 2 1 3 30 30 H 1.08998 * 109.46901 * 310.60081 * 8 6 4 31 31 H 1.09006 * 109.47248 * 70.60066 * 8 6 4 32 32 H 1.09002 * 109.46695 * 190.59555 * 8 6 4 33 33 H 1.08997 * 109.47484 * 300.00283 * 10 9 6 34 34 H 1.09001 * 109.47510 * 60.00142 * 10 9 6 35 35 H 1.08998 * 109.47093 * 179.97438 * 10 9 6 36 36 H 1.09003 * 111.00266 * 35.20775 * 13 11 3 37 37 H 1.08997 * 111.00722 * 159.06015 * 13 11 3 38 38 H 1.08995 * 110.36231 * 204.14615 * 14 13 11 39 39 H 1.09002 * 110.45889 * 81.87626 * 14 13 11 40 40 H 0.97003 * 120.00210 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.87803 * 239.51941 * 24 15 14 42 42 H 1.08998 * 110.01294 * 118.43130 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3408 1.9820 1.1626 5 8 2.6353 3.1584 1.1760 6 6 2.3295 1.1933 2.4468 7 1 2.7803 0.2156 2.2767 8 6 0.8864 1.0137 2.9222 9 8 3.0755 1.8950 3.4433 10 6 3.7036 1.0450 4.4050 11 6 2.1561 2.1095 -1.2637 12 1 1.5951 1.6137 -2.0559 13 6 3.6509 2.2558 -1.6529 14 6 4.0701 3.4915 -0.8181 15 7 2.8965 4.3831 -0.8483 16 6 2.9208 5.7406 -0.6695 17 1 3.6736 6.1888 -0.0380 18 6 1.9777 6.5406 -1.2999 19 7 1.7938 7.7809 -0.8998 20 14 0.9696 5.8569 -2.7161 21 1 -0.2093 5.1309 -2.1793 22 1 0.5115 6.9731 -3.5819 23 1 1.8053 4.9232 -3.5130 24 6 1.6959 3.5737 -1.1029 25 1 -0.3633 -1.0080 0.2003 26 1 -0.3633 0.6774 0.7729 27 1 -0.3634 0.3307 -0.9730 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.3778 1.9778 2.9119 31 1 0.3682 0.3224 2.2576 32 1 0.8851 0.6130 3.9359 33 1 2.9442 0.4603 4.9241 34 1 4.3963 0.3729 3.8985 35 1 4.2498 1.6534 5.1258 36 1 4.2195 1.3738 -1.3579 37 1 3.7596 2.4499 -2.7199 38 1 4.9310 3.9819 -1.2725 39 1 4.2983 3.1993 0.2070 40 1 1.1350 8.3402 -1.3405 41 1 1.2082 3.9116 -2.0174 42 1 1.0060 3.6554 -0.2631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481759153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:14 Heat of formation + Delta-G solvation = -10.190151 kcal Electronic energy + Delta-G solvation = -23087.453002 eV Core-core repulsion = 19877.570055 eV Total energy + Delta-G solvation = -3209.882947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39772 -38.04251 -36.19554 -35.62026 -32.43104 -31.24956 -30.43748 -29.07819 -27.82856 -26.81296 -24.41190 -23.75305 -23.24401 -21.17092 -19.98668 -18.39317 -17.36408 -16.90730 -16.60445 -15.69300 -15.36145 -15.24741 -14.85747 -14.45742 -14.07617 -13.56206 -13.32013 -13.24838 -12.90498 -12.69273 -12.54141 -12.36315 -12.21733 -11.83589 -11.67753 -11.40372 -11.35720 -11.17550 -10.98876 -10.75650 -10.69325 -10.40762 -10.20784 -9.82734 -9.74837 -9.26419 -8.76402 -8.38355 -8.14163 -6.51010 -5.70885 -3.03710 2.95469 3.07570 3.46808 3.56304 3.62678 3.93918 4.60662 4.67176 4.73965 4.91430 4.99957 5.06220 5.16502 5.20298 5.25530 5.28813 5.35343 5.47635 5.51955 5.57283 5.58893 5.60846 5.66464 5.68964 5.74676 5.99500 6.05018 6.19313 6.23459 6.34430 6.45113 6.73823 6.88800 7.00576 7.13936 7.21774 7.73335 8.16136 8.60454 8.74755 9.14309 9.95530 10.54632 11.47521 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.007357 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.313408 B = 3804.888424 C = 4308.576705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 N -0.611 5.611 4 C 0.486 3.514 5 O -0.436 6.436 6 C 0.073 3.927 7 H 0.075 0.925 8 C -0.178 4.178 9 O -0.356 6.356 10 C 0.030 3.970 11 C 0.136 3.864 12 H 0.087 0.913 13 C -0.148 4.148 14 C 0.138 3.862 15 N -0.585 5.585 16 C -0.213 4.213 17 H 0.082 0.918 18 C 0.016 3.984 19 N -0.920 5.920 20 Si 0.896 3.104 21 H -0.291 1.291 22 H -0.308 1.308 23 H -0.278 1.278 24 C 0.127 3.873 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.041 0.959 40 H 0.259 0.741 41 H 0.021 0.979 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -22.584 4.669 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 N -0.349 5.349 4 C 0.270 3.730 5 O -0.304 6.304 6 C 0.011 3.989 7 H 0.092 0.908 8 C -0.236 4.236 9 O -0.274 6.274 10 C -0.067 4.067 11 C 0.032 3.968 12 H 0.106 0.894 13 C -0.188 4.188 14 C 0.013 3.987 15 N -0.311 5.311 16 C -0.342 4.342 17 H 0.099 0.901 18 C -0.181 4.181 19 N -0.565 5.565 20 Si 0.730 3.270 21 H -0.219 1.219 22 H -0.236 1.236 23 H -0.205 1.205 24 C 0.002 3.998 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.484 -21.433 4.707 21.949 hybrid contribution -0.826 -0.806 -0.738 1.370 sum -1.311 -22.240 3.969 22.629 Atomic orbital electron populations 1.22425 0.96153 1.02038 1.03235 1.21544 0.94392 0.83192 1.02736 1.47909 1.67406 1.13540 1.06070 1.20297 0.79780 0.88800 0.84144 1.91094 1.41018 1.13601 1.84671 1.21985 0.93524 0.94780 0.88609 0.90753 1.22445 0.95415 1.03743 1.01988 1.88119 1.67491 1.32231 1.39550 1.22840 0.96349 0.95284 0.92213 1.22051 0.96916 0.93676 0.84142 0.89449 1.23263 0.95348 0.99459 1.00725 1.21760 0.91016 0.89283 0.96677 1.44227 0.99611 1.02694 1.84567 1.18579 1.15394 0.78531 1.21660 0.90080 1.25228 0.99118 0.95027 0.98702 1.69803 1.36394 1.07955 1.42346 0.86683 0.79810 0.76295 0.84257 1.21884 1.23622 1.20504 1.21722 0.92289 0.88005 0.97806 0.91751 0.91468 0.92097 0.90611 0.90646 0.91027 0.90325 0.91637 0.94195 0.94173 0.89283 0.91795 0.90856 0.94513 0.94189 0.93100 0.96192 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.27 37.16 0.34 -1.29 16 2 C 0.10 1.02 5.61 -4.04 -0.02 1.00 16 3 N -0.61 -9.22 2.51 -164.03 -0.41 -9.63 16 4 C 0.49 8.66 5.96 -10.98 -0.07 8.59 16 5 O -0.44 -10.44 10.19 -13.69 -0.14 -10.58 16 6 C 0.07 0.99 2.30 -27.88 -0.06 0.93 16 7 H 0.07 0.78 6.32 -51.93 -0.33 0.45 16 8 C -0.18 -2.03 8.91 37.16 0.33 -1.70 16 9 O -0.36 -5.67 9.94 -54.48 -0.54 -6.22 16 10 C 0.03 0.31 10.81 101.05 1.09 1.41 16 11 C 0.14 2.39 3.69 -66.10 -0.24 2.15 16 12 H 0.09 1.29 8.02 -51.93 -0.42 0.88 16 13 C -0.15 -2.61 6.72 -24.58 -0.17 -2.77 16 14 C 0.14 3.12 6.28 -2.53 -0.02 3.10 16 15 N -0.59 -15.74 1.86 -170.08 -0.32 -16.05 16 16 C -0.21 -6.70 10.56 -15.06 -0.16 -6.86 16 17 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.02 0.52 5.47 -17.43 -0.10 0.43 16 19 N -0.92 -30.60 13.97 55.49 0.78 -29.83 16 20 Si 0.90 24.54 24.46 -169.99 -4.16 20.38 16 21 H -0.29 -7.77 6.90 56.52 0.39 -7.38 16 22 H -0.31 -8.43 7.11 56.52 0.40 -8.03 16 23 H -0.28 -7.35 6.96 56.52 0.39 -6.96 16 24 C 0.13 3.04 4.52 -3.07 -0.01 3.03 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.70 6.04 -51.93 -0.31 0.39 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 29 H 0.08 0.59 5.53 -51.93 -0.29 0.30 16 30 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.08 0.72 4.34 -51.93 -0.23 0.49 16 32 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 33 H 0.04 0.33 7.72 -51.93 -0.40 -0.07 16 34 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.96 5.76 -51.93 -0.30 0.66 16 40 H 0.26 8.16 8.31 -40.82 -0.34 7.82 16 41 H 0.02 0.52 3.13 -51.93 -0.16 0.36 16 42 H 0.04 1.04 6.98 -51.93 -0.36 0.68 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -38.24 315.07 -5.70 -43.94 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -6.57 Total: -4.77 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 0.92 Total: 8.01 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.05 Total: -55.51 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.68 Total: -16.80 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.16 Total: 20.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -38.24 -5.70 -43.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481759153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.749 kcal (2) G-P(sol) polarization free energy of solvation -38.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds