Wall clock time and date at job start Mon Mar 30 2020 00:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47135 * 2 1 4 4 C 1.34779 * 120.00039 * 95.10403 * 3 2 1 5 5 O 1.21276 * 120.00005 * 186.30067 * 4 3 2 6 6 C 1.50704 * 119.99848 * 6.02200 * 4 3 2 7 7 H 1.09002 * 109.47029 * 42.49092 * 6 4 3 8 8 C 1.53000 * 109.47187 * 282.49409 * 6 4 3 9 9 O 1.42897 * 109.47188 * 162.49234 * 6 4 3 10 10 C 1.42896 * 113.99862 * 210.00187 * 9 6 4 11 11 C 1.46503 * 120.00370 * 275.10317 * 3 2 1 12 12 H 1.09004 * 110.63479 * 16.61587 * 11 3 2 13 13 C 1.55154 * 110.72431 * 253.27733 * 11 3 2 14 14 C 1.54912 * 101.57981 * 277.13801 * 13 11 3 15 15 N 1.47419 * 104.83015 * 322.98840 * 14 13 11 16 16 C 1.36941 * 125.64489 * 204.16439 * 15 14 13 17 17 H 1.08001 * 120.00090 * 329.65684 * 16 15 14 18 18 C 1.38808 * 119.99834 * 149.66174 * 16 15 14 19 19 N 1.31621 * 119.99890 * 164.11685 * 18 16 15 20 20 Si 1.86795 * 120.00212 * 344.11431 * 18 16 15 21 21 H 1.48497 * 109.47020 * 84.85429 * 20 18 16 22 22 H 1.48501 * 109.47503 * 204.85458 * 20 18 16 23 23 H 1.48498 * 109.47040 * 324.85719 * 20 18 16 24 24 C 1.47017 * 108.70426 * 24.13220 * 15 14 13 25 25 H 1.09003 * 109.47088 * 191.23925 * 1 2 3 26 26 H 1.09004 * 109.47022 * 311.23368 * 1 2 3 27 27 H 1.09000 * 109.47459 * 71.22996 * 1 2 3 28 28 H 1.09002 * 109.46658 * 240.00731 * 2 1 3 29 29 H 1.08999 * 109.47827 * 120.00338 * 2 1 3 30 30 H 1.08998 * 109.46901 * 310.60081 * 8 6 4 31 31 H 1.09006 * 109.47248 * 70.60066 * 8 6 4 32 32 H 1.09002 * 109.46695 * 190.59555 * 8 6 4 33 33 H 1.08997 * 109.47484 * 300.00283 * 10 9 6 34 34 H 1.09001 * 109.47510 * 60.00142 * 10 9 6 35 35 H 1.08998 * 109.47093 * 179.97438 * 10 9 6 36 36 H 1.09003 * 111.00266 * 35.20775 * 13 11 3 37 37 H 1.08997 * 111.00722 * 159.06015 * 13 11 3 38 38 H 1.08995 * 110.36231 * 204.14615 * 14 13 11 39 39 H 1.09002 * 110.45889 * 81.87626 * 14 13 11 40 40 H 0.97003 * 120.00210 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.87803 * 239.51941 * 24 15 14 42 42 H 1.08998 * 110.01294 * 118.43130 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3408 1.9820 1.1626 5 8 2.6353 3.1584 1.1760 6 6 2.3295 1.1933 2.4468 7 1 2.7803 0.2156 2.2767 8 6 0.8864 1.0137 2.9222 9 8 3.0755 1.8950 3.4433 10 6 3.7036 1.0450 4.4050 11 6 2.1561 2.1095 -1.2637 12 1 1.5951 1.6137 -2.0559 13 6 3.6509 2.2558 -1.6529 14 6 4.0701 3.4915 -0.8181 15 7 2.8965 4.3831 -0.8483 16 6 2.9208 5.7406 -0.6695 17 1 3.6736 6.1888 -0.0380 18 6 1.9777 6.5406 -1.2999 19 7 1.7938 7.7809 -0.8998 20 14 0.9696 5.8569 -2.7161 21 1 -0.2093 5.1309 -2.1793 22 1 0.5115 6.9731 -3.5819 23 1 1.8053 4.9232 -3.5130 24 6 1.6959 3.5737 -1.1029 25 1 -0.3633 -1.0080 0.2003 26 1 -0.3633 0.6774 0.7729 27 1 -0.3634 0.3307 -0.9730 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.3778 1.9778 2.9119 31 1 0.3682 0.3224 2.2576 32 1 0.8851 0.6130 3.9359 33 1 2.9442 0.4603 4.9241 34 1 4.3963 0.3729 3.8985 35 1 4.2498 1.6534 5.1258 36 1 4.2195 1.3738 -1.3579 37 1 3.7596 2.4499 -2.7199 38 1 4.9310 3.9819 -1.2725 39 1 4.2983 3.1993 0.2070 40 1 1.1350 8.3402 -1.3405 41 1 1.2082 3.9116 -2.0174 42 1 1.0060 3.6554 -0.2631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481759153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:14 Heat of formation + Delta-G solvation = -39.070746 kcal Electronic energy + Delta-G solvation = -23088.705359 eV Core-core repulsion = 19877.570055 eV Total energy + Delta-G solvation = -3211.135304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72020 -39.27961 -37.74844 -36.86269 -34.51176 -32.61485 -31.64082 -30.67425 -29.45264 -27.66375 -26.34761 -25.08506 -24.10154 -22.62981 -21.85878 -19.67201 -18.92475 -18.54119 -17.94159 -17.27081 -16.84178 -16.47663 -16.10638 -15.73847 -15.21599 -15.13623 -14.96377 -14.80255 -14.27651 -14.09208 -13.64315 -13.45859 -13.33289 -13.27206 -12.98797 -12.93524 -12.83824 -12.45156 -12.34277 -12.23542 -12.15836 -11.94959 -11.83203 -11.67244 -11.31481 -10.84141 -10.71955 -10.12615 -9.48747 -8.70796 -8.16350 -5.46214 1.24596 1.33425 1.46848 1.78114 1.86128 2.42500 2.99007 3.06599 3.51674 3.53923 3.77993 3.80722 3.94403 4.05720 4.16314 4.22860 4.41944 4.42806 4.44673 4.54450 4.56567 4.63519 4.68503 4.78913 4.80461 4.83806 4.87725 4.98425 5.00880 5.04809 5.10446 5.15554 5.42920 5.48867 5.76559 5.84668 6.14754 6.15212 6.58157 6.87881 7.48044 7.60387 8.25853 9.06820 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.007357 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.313408 B = 3804.888424 C = 4308.576705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.477 3.523 5 O -0.517 6.517 6 C 0.076 3.924 7 H 0.118 0.882 8 C -0.171 4.171 9 O -0.406 6.406 10 C 0.023 3.977 11 C 0.144 3.856 12 H 0.133 0.867 13 C -0.128 4.128 14 C 0.131 3.869 15 N -0.599 5.599 16 C -0.217 4.217 17 H 0.026 0.974 18 C -0.049 4.049 19 N -0.970 5.970 20 Si 0.975 3.025 21 H -0.281 1.281 22 H -0.306 1.306 23 H -0.255 1.255 24 C 0.124 3.876 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.032 0.968 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.014 0.986 42 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -27.989 3.168 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.024 4.024 3 N -0.341 5.341 4 C 0.264 3.736 5 O -0.391 6.391 6 C 0.015 3.985 7 H 0.135 0.865 8 C -0.228 4.228 9 O -0.325 6.325 10 C -0.072 4.072 11 C 0.040 3.960 12 H 0.151 0.849 13 C -0.167 4.167 14 C 0.006 3.994 15 N -0.324 5.324 16 C -0.347 4.347 17 H 0.044 0.956 18 C -0.241 4.241 19 N -0.618 5.618 20 Si 0.805 3.195 21 H -0.209 1.209 22 H -0.235 1.235 23 H -0.180 1.180 24 C -0.002 4.002 25 H 0.117 0.883 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -1.359 -26.951 3.203 27.175 hybrid contribution -0.498 0.855 -0.077 0.993 sum -1.857 -26.096 3.125 26.348 Atomic orbital electron populations 1.22422 0.95610 1.03550 1.02196 1.22005 0.94771 0.79993 1.05644 1.48043 1.66252 1.15386 1.04406 1.21232 0.78008 0.88288 0.86117 1.91068 1.44877 1.17105 1.86017 1.22100 0.94890 0.95208 0.86263 0.86452 1.22430 0.93817 1.02441 1.04098 1.88073 1.68344 1.35161 1.40927 1.23066 0.97273 0.95252 0.91630 1.22003 0.97146 0.90283 0.86537 0.84917 1.23175 0.95390 0.97765 1.00399 1.21849 0.89468 0.91014 0.97040 1.44283 1.02466 1.01551 1.84131 1.18417 1.14158 0.81499 1.20630 0.95627 1.26003 1.01073 0.95451 1.01622 1.69976 1.38015 1.09871 1.43945 0.85440 0.78281 0.75883 0.79933 1.20851 1.23465 1.17980 1.21782 0.90594 0.92117 0.95666 0.88346 0.93521 0.92807 0.87510 0.87971 0.94883 0.87532 0.89311 0.91630 0.92357 0.89436 0.87945 0.89407 0.95777 0.95763 0.93042 0.96884 0.97764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.27 71.98 0.67 -1.71 16 2 C 0.10 1.32 5.61 86.38 0.48 1.81 16 3 N -0.60 -16.27 2.51 -791.26 -1.99 -18.26 16 4 C 0.48 16.66 5.96 87.66 0.52 17.19 16 5 O -0.52 -25.98 10.19 15.39 0.16 -25.82 16 6 C 0.08 1.92 2.30 29.85 0.07 1.99 16 7 H 0.12 1.89 6.32 -2.39 -0.02 1.87 16 8 C -0.17 -3.52 8.91 71.98 0.64 -2.88 16 9 O -0.41 -12.85 9.94 -130.57 -1.30 -14.15 16 10 C 0.02 0.45 10.81 113.37 1.23 1.68 16 11 C 0.14 4.60 3.69 46.18 0.17 4.77 16 12 H 0.13 3.12 8.02 -2.38 -0.02 3.10 16 13 C -0.13 -4.06 6.72 31.99 0.21 -3.84 16 14 C 0.13 6.01 6.28 86.86 0.55 6.56 16 15 N -0.60 -33.33 1.86 -692.02 -1.29 -34.62 16 16 C -0.22 -14.57 10.56 84.03 0.89 -13.69 16 17 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 18 C -0.05 -3.22 5.47 84.86 0.46 -2.76 16 19 N -0.97 -68.12 13.97 21.65 0.30 -67.82 16 20 Si 0.98 52.08 24.46 68.60 1.68 53.76 16 21 H -0.28 -14.43 6.90 99.48 0.69 -13.74 16 22 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 23 H -0.25 -12.52 6.96 99.48 0.69 -11.83 16 24 C 0.12 5.87 4.52 86.73 0.39 6.26 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.82 6.04 -2.38 -0.01 0.81 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.11 0.93 8.11 -2.39 -0.02 0.91 16 29 H 0.10 0.90 5.53 -2.39 -0.01 0.89 16 30 H 0.03 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.11 1.54 4.34 -2.38 -0.01 1.53 16 32 H 0.09 1.41 7.71 -2.39 -0.02 1.39 16 33 H 0.07 0.89 7.72 -2.39 -0.02 0.87 16 34 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.02 1.22 5.76 -2.39 -0.01 1.20 16 40 H 0.26 17.17 8.31 -92.71 -0.77 16.40 16 41 H 0.01 0.67 3.13 -2.39 -0.01 0.67 16 42 H 0.00 0.23 6.98 -2.39 -0.02 0.22 16 Total: -1.00 -94.54 315.07 4.81 -89.73 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 0.97 Total: 1.79 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 6.28 Total: 15.38 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -2.97 Total: -120.69 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.14 Total: -39.97 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 1.68 Total: 53.76 kcal Total: -94.54 4.81 -89.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481759153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.656 kcal (2) G-P(sol) polarization free energy of solvation -94.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds