Wall clock time and date at job start Mon Mar 30 2020 00:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46494 * 120.00068 * 90.00086 * 3 2 1 5 5 C 1.52999 * 109.47318 * 89.99451 * 4 3 2 6 6 N 1.46502 * 109.47206 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99971 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00220 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00009 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00290 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 120.00053 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47165 * 89.99817 * 11 9 7 13 13 H 1.48499 * 109.46978 * 210.00040 * 11 9 7 14 14 H 1.48506 * 109.46735 * 329.99777 * 11 9 7 15 15 C 1.34779 * 119.99616 * 269.99507 * 3 2 1 16 16 O 1.21277 * 119.99587 * 180.02562 * 15 3 2 17 17 C 1.50695 * 120.00125 * 0.02562 * 15 3 2 18 18 C 1.53001 * 109.47090 * 180.02562 * 17 15 3 19 19 H 1.09003 * 110.75168 * 57.01710 * 18 17 15 20 20 C 1.55309 * 110.84575 * 180.71480 * 18 17 15 21 21 C 1.54944 * 100.93983 * 152.32242 * 20 18 17 22 22 O 1.43643 * 105.13891 * 323.55379 * 21 20 18 23 23 C 1.43242 * 109.97095 * 24.42654 * 22 21 20 24 24 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 26 26 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 28 28 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 29 29 H 1.09002 * 109.47065 * 209.99666 * 4 3 2 30 30 H 1.09000 * 109.47308 * 329.99499 * 4 3 2 31 31 H 1.08994 * 109.47382 * 299.99818 * 5 4 3 32 32 H 1.08999 * 109.46903 * 60.00350 * 5 4 3 33 33 H 0.96998 * 119.99636 * 359.97438 * 6 5 4 34 34 H 0.97004 * 119.99766 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.47205 * 299.99718 * 17 15 3 36 36 H 1.09000 * 109.47198 * 59.99674 * 17 15 3 37 37 H 1.09003 * 111.12304 * 270.23310 * 20 18 17 38 38 H 1.08996 * 111.13086 * 34.40352 * 20 18 17 39 39 H 1.09005 * 110.31284 * 204.63804 * 21 20 18 40 40 H 1.09000 * 110.39456 * 82.51215 * 21 20 18 41 41 H 1.08996 * 109.83083 * 238.77878 * 23 22 21 42 42 H 1.09007 * 109.82827 * 117.80107 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.7075 1.8314 1.7104 6 7 3.9518 2.5226 2.9789 7 6 5.1841 2.4505 3.5715 8 1 5.9761 1.8846 3.1037 9 6 5.4158 3.1058 4.7731 10 7 6.6001 3.0362 5.3431 11 14 4.0462 4.0854 5.5820 12 1 3.2799 3.2022 6.4973 13 1 4.6319 5.2102 6.3546 14 1 3.1381 4.6226 4.5369 15 6 2.2430 2.0165 -1.1673 16 8 2.6477 3.1598 -1.1673 17 6 1.9914 1.3062 -2.4723 18 6 2.3236 2.2433 -3.6353 19 1 3.3543 2.5918 -3.5682 20 6 2.0581 1.5480 -4.9984 21 6 1.7448 2.7713 -5.8963 22 8 1.0205 3.6804 -5.0524 23 6 1.3425 3.4345 -3.6784 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 2.0955 3.1411 1.1383 30 1 1.5817 1.6878 2.0283 31 1 3.8744 0.7623 1.8408 32 1 4.3883 2.2156 0.9508 33 1 3.2408 3.0318 3.3984 34 1 6.7618 3.4939 6.1829 35 1 2.6214 0.4185 -2.5302 36 1 0.9434 1.0124 -2.5299 37 1 2.9448 1.0201 -5.3494 38 1 1.2019 0.8764 -4.9368 39 1 1.1294 2.4705 -6.7443 40 1 2.6685 3.2331 -6.2450 41 1 0.4366 3.1876 -3.1248 42 1 1.8132 4.3171 -3.2453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482915428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:39 Heat of formation + Delta-G solvation = -98.403343 kcal Electronic energy + Delta-G solvation = -21185.030872 eV Core-core repulsion = 17971.322714 eV Total energy + Delta-G solvation = -3213.708158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36198 -40.02266 -37.62466 -36.47948 -34.64608 -33.73779 -31.79211 -30.92934 -29.77437 -27.85683 -25.34281 -24.29435 -23.50582 -23.14385 -21.72538 -20.18150 -19.47146 -18.11333 -17.81601 -17.43627 -16.80783 -16.41017 -16.33338 -15.79927 -15.50253 -15.36163 -14.93899 -14.76362 -14.58041 -14.30590 -14.03388 -13.62887 -13.47372 -13.20574 -13.02487 -12.82899 -12.66547 -12.54367 -12.33115 -12.17529 -12.13843 -12.00610 -11.87034 -11.76306 -11.68972 -11.03860 -10.81263 -10.48811 -9.72003 -9.39431 -8.07994 -5.43794 1.35490 1.40050 1.47185 1.63698 1.95175 2.44795 2.96169 3.22881 3.34070 3.61926 3.73916 3.78940 3.90176 4.08510 4.14110 4.14771 4.26653 4.35540 4.38340 4.46940 4.52518 4.58164 4.63179 4.71914 4.81401 4.89775 4.90765 4.96017 5.00695 5.05460 5.06161 5.08114 5.28070 5.41731 5.54687 5.68708 6.04478 6.15063 6.43922 7.00474 7.19995 7.74236 7.95090 9.13384 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.003772 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.597569 B = 7421.920764 C = 7856.474185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.607 5.607 4 C 0.117 3.883 5 C 0.151 3.849 6 N -0.756 5.756 7 C -0.243 4.243 8 H 0.052 0.948 9 C -0.062 4.062 10 N -0.982 5.982 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.293 1.293 14 H -0.256 1.256 15 C 0.499 3.501 16 O -0.584 6.584 17 C -0.118 4.118 18 C -0.107 4.107 19 H 0.072 0.928 20 C -0.138 4.138 21 C 0.039 3.961 22 O -0.413 6.413 23 C 0.061 3.939 24 H 0.090 0.910 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.034 0.966 32 H 0.002 0.998 33 H 0.368 0.632 34 H 0.260 0.740 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.368 -10.182 -21.350 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.027 4.027 3 N -0.339 5.339 4 C -0.007 4.007 5 C 0.024 3.976 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.071 0.929 9 C -0.253 4.253 10 N -0.632 5.632 11 Si 0.786 3.214 12 H -0.194 1.194 13 H -0.220 1.220 14 H -0.180 1.180 15 C 0.289 3.711 16 O -0.464 6.464 17 C -0.157 4.157 18 C -0.126 4.126 19 H 0.090 0.910 20 C -0.175 4.175 21 C -0.037 4.037 22 O -0.334 6.334 23 C -0.015 4.015 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.052 0.948 32 H 0.020 0.980 33 H 0.201 0.799 34 H 0.069 0.931 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.093 -9.524 -21.414 29.007 hybrid contribution 0.249 0.940 1.181 1.530 sum -16.844 -8.585 -20.233 27.691 Atomic orbital electron populations 1.22185 0.94430 1.03648 1.02183 1.21954 0.95479 0.80121 1.05147 1.48068 1.65315 1.15763 1.04779 1.21351 0.95298 0.97978 0.86034 1.20953 0.95339 0.95343 0.86008 1.42538 1.11060 1.62073 1.24540 1.18987 0.89377 1.26154 1.02831 0.92949 1.25572 0.99387 1.01938 0.98443 1.69891 1.23600 1.49392 1.20325 0.85341 0.79013 0.78386 0.78642 1.19367 1.22003 1.18037 1.21535 0.76239 0.86471 0.86823 1.90723 1.47219 1.20416 1.88025 1.21772 1.06201 0.99445 0.88260 1.22454 0.99791 0.94888 0.95487 0.90979 1.23328 1.04564 0.97668 0.91941 1.23616 0.96729 0.89075 0.94280 1.88370 1.68285 1.59646 1.17063 1.23097 0.97964 0.97949 0.82513 0.89088 0.93449 0.92057 0.89847 0.87379 0.91928 0.88339 0.94753 0.98026 0.79888 0.93084 0.85421 0.85727 0.87683 0.88014 0.87816 0.92349 0.91436 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 71.98 0.74 -1.07 16 2 C 0.09 1.33 5.93 86.38 0.51 1.84 16 3 N -0.61 -14.45 2.47 -821.82 -2.03 -16.48 16 4 C 0.12 3.65 5.52 86.38 0.48 4.13 16 5 C 0.15 6.15 6.58 86.38 0.57 6.71 16 6 N -0.76 -37.31 5.41 -343.46 -1.86 -39.17 16 7 C -0.24 -14.53 10.47 84.03 0.88 -13.65 16 8 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 9 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 10 N -0.98 -64.37 13.97 21.65 0.30 -64.07 16 11 Si 0.96 46.39 27.74 68.60 1.90 48.30 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 15 C 0.50 12.91 7.46 87.65 0.65 13.56 16 16 O -0.58 -21.34 14.47 -3.02 -0.04 -21.38 16 17 C -0.12 -1.74 3.65 29.85 0.11 -1.63 16 18 C -0.11 -1.94 2.59 -9.53 -0.02 -1.96 16 19 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 20 C -0.14 -1.50 6.62 32.05 0.21 -1.29 16 21 C 0.04 0.59 7.78 72.65 0.56 1.15 16 22 O -0.41 -9.88 11.36 -148.98 -1.69 -11.57 16 23 C 0.06 1.45 6.38 72.45 0.46 1.91 16 24 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.61 7.22 -2.39 -0.02 0.60 16 27 H 0.08 1.25 8.07 -2.39 -0.02 1.23 16 28 H 0.11 0.90 6.44 -2.39 -0.02 0.89 16 29 H 0.06 2.23 7.42 -2.39 -0.02 2.21 16 30 H 0.10 2.61 8.07 -2.39 -0.02 2.59 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.37 17.04 5.53 -92.71 -0.51 16.53 16 34 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 35 H 0.13 1.20 7.40 -2.39 -0.02 1.18 16 36 H 0.12 1.17 7.12 -2.39 -0.02 1.15 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.72 8.04 -2.39 -0.02 0.70 16 39 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.50 7.76 -2.39 -0.02 1.48 16 42 H 0.04 1.35 7.72 -2.38 -0.02 1.33 16 Total: -1.00 -80.83 337.09 2.62 -78.21 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.42 Total: 19.73 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.62 Total: 6.44 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -3.59 Total: -119.72 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.74 Total: -32.95 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.90 Total: 48.30 kcal Total: -80.83 2.62 -78.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482915428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.195 kcal (2) G-P(sol) polarization free energy of solvation -80.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds