Wall clock time and date at job start Mon Mar 30 2020 01:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46934 * 2 1 4 4 C 1.42901 * 114.00144 * 180.02562 * 3 2 1 5 5 C 1.53780 * 113.61800 * 210.00196 * 4 3 2 6 6 C 1.53773 * 87.08293 * 220.01571 * 5 4 3 7 7 C 1.50693 * 113.61660 * 139.97541 * 6 5 4 8 8 O 1.21281 * 120.00095 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00182 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99910 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47129 * 324.99754 * 10 9 7 12 12 C 1.52997 * 109.47473 * 85.00011 * 10 9 7 13 13 C 1.52999 * 109.46944 * 205.00356 * 10 9 7 14 14 N 1.46492 * 109.47631 * 54.99476 * 13 10 9 15 15 C 1.36938 * 120.00241 * 180.02562 * 14 13 10 16 16 H 1.07999 * 120.00320 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99938 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00002 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99885 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46925 * 90.00103 * 19 17 15 21 21 H 1.48501 * 109.46675 * 209.99959 * 19 17 15 22 22 H 1.48498 * 109.47344 * 329.99965 * 19 17 15 23 23 C 1.53772 * 113.61779 * 112.49962 * 4 3 2 24 24 H 1.08997 * 109.46741 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47243 * 299.99708 * 1 2 3 26 26 H 1.08999 * 109.47145 * 60.00255 * 1 2 3 27 27 H 1.09002 * 109.47243 * 240.00292 * 2 1 3 28 28 H 1.08999 * 109.47145 * 119.99745 * 2 1 3 29 29 H 1.09005 * 112.90294 * 341.25157 * 4 3 2 30 30 H 1.09000 * 113.61356 * 105.46507 * 5 4 3 31 31 H 1.09005 * 113.60941 * 334.56464 * 5 4 3 32 32 H 1.08998 * 113.61423 * 270.80185 * 6 5 4 33 33 H 0.96994 * 120.00115 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 35 35 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 36 36 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.47317 * 175.00198 * 13 10 9 38 38 H 1.09006 * 109.47194 * 294.99834 * 13 10 9 39 39 H 0.97006 * 119.99812 * 0.02562 * 14 13 10 40 40 H 0.96999 * 120.00259 * 179.97438 * 18 17 15 41 41 H 1.09001 * 113.61446 * 25.43163 * 23 4 3 42 42 H 1.09003 * 113.61748 * 254.53026 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9489 2.7252 0.7039 6 6 4.9896 2.8316 -0.4231 7 6 5.2270 4.2431 -0.8943 8 8 4.6195 5.1620 -0.3871 9 7 6.1153 4.4845 -1.8788 10 6 6.3465 5.8568 -2.3365 11 1 5.4123 6.4167 -2.2928 12 6 7.3853 6.5270 -1.4350 13 6 6.8605 5.8341 -3.7774 14 7 5.9219 5.0880 -4.6190 15 6 6.1747 4.9337 -5.9560 16 1 7.0662 5.3617 -6.3900 17 6 5.2849 4.2271 -6.7536 18 7 5.5281 4.0783 -8.0385 19 14 3.7432 3.4861 -6.0028 20 1 2.6356 4.4727 -6.0721 21 1 3.3648 2.2632 -6.7556 22 1 4.0038 3.1332 -4.5841 23 6 4.0018 2.0466 -1.3024 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9290 0.5458 0.3218 30 1 4.3849 2.5316 1.6840 31 1 3.2303 3.5448 0.7136 32 1 5.9144 2.2933 -0.2157 33 1 6.6015 3.7497 -2.2843 34 1 8.3196 5.9671 -1.4787 35 1 7.0191 6.5432 -0.4085 36 1 7.5577 7.5479 -1.7758 37 1 6.9481 6.8554 -4.1481 38 1 7.8376 5.3518 -3.8071 39 1 5.1213 4.7032 -4.2292 40 1 4.9067 3.5843 -8.5958 41 1 3.2978 2.6807 -1.8413 42 1 4.4807 1.3052 -1.9421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483224733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:11 Heat of formation + Delta-G solvation = -58.677944 kcal Electronic energy + Delta-G solvation = -21254.490158 eV Core-core repulsion = 18042.504622 eV Total energy + Delta-G solvation = -3211.985536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39795 -38.66217 -36.63593 -35.78698 -33.72542 -31.55506 -31.12885 -30.30560 -26.18065 -25.81688 -25.77028 -23.02802 -22.31483 -21.39753 -20.33737 -19.49466 -18.03322 -17.44862 -16.33572 -15.99963 -15.73197 -15.61339 -14.83299 -14.38384 -14.21690 -13.95821 -13.55882 -13.02211 -12.88750 -12.74407 -12.64190 -12.50127 -12.39671 -12.23727 -11.91386 -11.67285 -11.62904 -11.23020 -11.11423 -10.96452 -10.89962 -10.75070 -10.49912 -10.14686 -9.65029 -9.62869 -9.47181 -8.96378 -8.80338 -7.28865 -5.80828 -3.16979 2.79366 3.28601 3.34262 3.39711 3.44014 3.67381 4.33926 4.44626 4.55944 4.63676 4.67298 4.86444 4.94470 5.02803 5.14414 5.15488 5.18731 5.37152 5.43987 5.48053 5.56841 5.61359 5.67866 5.71447 5.82686 5.87932 5.91250 5.92738 5.94923 6.04908 6.17513 6.29813 6.39165 6.58939 6.84631 7.13635 7.76888 7.94679 8.37693 8.44984 9.16785 9.89064 10.08712 11.37296 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.005924 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.497856 B = 4725.203014 C = 6484.810808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.372 6.372 4 C 0.063 3.937 5 C -0.111 4.111 6 C -0.138 4.138 7 C 0.525 3.475 8 O -0.545 6.545 9 N -0.713 5.713 10 C 0.128 3.872 11 H 0.086 0.914 12 C -0.156 4.156 13 C 0.149 3.851 14 N -0.755 5.755 15 C -0.247 4.247 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.933 5.933 19 Si 0.882 3.118 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.140 4.140 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.404 0.596 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.032 0.968 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.095 0.905 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 -7.407 19.084 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.005 3.995 5 C -0.148 4.148 6 C -0.159 4.159 7 C 0.311 3.689 8 O -0.423 6.423 9 N -0.364 5.364 10 C 0.023 3.977 11 H 0.104 0.896 12 C -0.215 4.215 13 C 0.021 3.979 14 N -0.401 5.401 15 C -0.377 4.377 16 H 0.109 0.891 17 C -0.189 4.189 18 N -0.580 5.580 19 Si 0.713 3.287 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.178 4.178 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.239 0.761 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.412 -6.555 19.203 20.433 hybrid contribution -0.631 -1.193 0.024 1.350 sum -3.043 -7.748 19.227 20.951 Atomic orbital electron populations 1.21751 0.93854 1.02130 1.03244 1.22518 0.95665 0.84123 0.99913 1.87998 1.20469 1.26104 1.94519 1.23660 0.81300 0.97934 0.96595 1.23096 0.97023 0.98065 0.96655 1.22482 0.99532 0.94379 0.99525 1.20249 0.78737 0.90433 0.79487 1.90666 1.48741 1.45898 1.56981 1.46074 1.42734 1.10016 1.37606 1.21309 0.99652 0.82498 0.94211 0.89582 1.22079 0.98764 1.00770 0.99882 1.20963 0.93353 0.96558 0.87003 1.42704 1.25238 1.65372 1.06821 1.19054 1.07005 1.29015 0.82596 0.89136 1.24659 0.98407 1.00496 0.95337 1.69699 1.37899 1.46270 1.04158 0.86588 0.84633 0.79089 0.78430 1.21083 1.21720 1.20209 1.23459 0.97665 0.99558 0.97090 0.91221 0.91887 0.91730 0.93318 0.93488 0.89278 0.90621 0.87689 0.86803 0.76138 0.92460 0.92417 0.91524 0.94024 0.94973 0.80402 0.93018 0.88601 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.53 6.50 37.16 0.24 0.77 16 3 O -0.37 -4.76 10.35 -35.23 -0.36 -5.12 16 4 C 0.06 0.71 4.31 -25.92 -0.11 0.59 16 5 C -0.11 -1.30 7.24 -25.92 -0.19 -1.49 16 6 C -0.14 -1.66 4.15 -90.96 -0.38 -2.04 16 7 C 0.53 8.18 7.32 -10.99 -0.08 8.10 16 8 O -0.55 -10.26 15.56 5.56 0.09 -10.18 16 9 N -0.71 -10.81 4.52 -53.81 -0.24 -11.06 16 10 C 0.13 2.05 2.73 -67.93 -0.19 1.87 16 11 H 0.09 1.56 7.58 -51.93 -0.39 1.16 16 12 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 13 C 0.15 2.77 5.82 -4.05 -0.02 2.75 16 14 N -0.76 -17.64 5.24 -59.91 -0.31 -17.96 16 15 C -0.25 -6.91 10.47 -15.06 -0.16 -7.07 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 18 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 19 Si 0.88 22.26 27.74 -169.99 -4.71 17.54 16 20 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 23 C -0.14 -1.80 7.46 -25.92 -0.19 -1.99 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.51 7.43 -51.93 -0.39 1.12 16 32 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 5.67 8.60 -40.82 -0.35 5.32 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.49 5.20 -40.82 -0.21 8.28 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.10 1.51 8.09 -51.93 -0.42 1.09 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -33.41 346.36 -7.25 -40.66 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.26 Total: 10.31 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.44 Total: -1.04 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.22 Total: -57.40 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.28 Total: -15.30 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.41 -7.25 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483224733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.018 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds