Wall clock time and date at job start Mon Mar 30 2020 01:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00207 * 2 1 4 4 C 1.50697 * 109.46979 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00384 * 359.72049 * 4 3 2 6 6 N 1.34783 * 119.99969 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99726 * 0.02562 * 6 4 3 8 8 C 1.46498 * 120.00206 * 179.97438 * 6 4 3 9 9 C 1.53001 * 109.47350 * 305.78542 * 8 6 4 10 10 C 1.52997 * 109.46966 * 299.99580 * 9 8 6 11 11 C 1.53004 * 109.47273 * 300.00365 * 10 9 8 12 12 N 1.46496 * 109.47373 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00068 * 84.99944 * 12 11 10 14 14 H 1.08004 * 119.99602 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00248 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00101 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47337 * 89.99255 * 17 15 13 19 19 H 1.48503 * 109.46926 * 209.99299 * 17 15 13 20 20 H 1.48502 * 109.46832 * 329.99612 * 17 15 13 21 21 C 1.52999 * 109.46977 * 59.99617 * 11 10 9 22 22 C 1.52992 * 109.47173 * 185.77890 * 8 6 4 23 23 H 1.08998 * 109.47070 * 300.00356 * 1 2 3 24 24 H 1.09006 * 109.46919 * 59.99786 * 1 2 3 25 25 H 1.08999 * 109.47626 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47182 * 59.99885 * 3 2 1 27 27 H 1.09002 * 109.46703 * 299.99800 * 3 2 1 28 28 H 1.09006 * 109.47213 * 84.07919 * 7 6 4 29 29 H 1.08999 * 109.47398 * 204.07899 * 7 6 4 30 30 H 1.09006 * 109.47272 * 324.08233 * 7 6 4 31 31 H 1.09005 * 109.46537 * 65.77829 * 8 6 4 32 32 H 1.08996 * 109.47388 * 59.99685 * 9 8 6 33 33 H 1.09000 * 109.47056 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47764 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47455 * 59.99887 * 10 9 8 36 36 H 1.09000 * 109.47164 * 299.99786 * 11 10 9 37 37 H 0.97001 * 120.00292 * 265.00097 * 12 11 10 38 38 H 0.96998 * 120.00232 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.47163 * 180.02562 * 21 11 10 40 40 H 1.09001 * 109.47105 * 60.00873 * 21 11 10 41 41 H 1.09000 * 109.47360 * 180.02562 * 22 8 6 42 42 H 1.09001 * 109.47564 * 300.00344 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0062 6 7 4.2766 2.2968 0.0002 7 6 3.6466 3.6193 -0.0003 8 6 5.7370 2.1811 0.0014 9 6 6.1779 1.3009 1.1727 10 6 5.7154 1.9322 2.4873 11 6 6.3370 3.3228 2.6319 12 7 5.8937 3.9276 3.8904 13 6 6.5603 3.6525 5.0544 14 1 7.4127 2.9893 5.0447 15 6 6.1399 4.2250 6.2470 16 7 5.1008 5.0328 6.2589 17 14 7.0498 3.8503 7.8349 18 1 8.1365 4.8436 8.0290 19 1 6.1032 3.9228 8.9768 20 1 7.6331 2.4866 7.7611 21 6 5.8960 4.2028 1.4605 22 6 6.3586 3.5715 0.1459 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.3946 3.9022 1.0218 29 1 4.3373 4.3507 -0.4198 30 1 2.7389 3.5892 -0.6031 31 1 6.0665 1.7312 -0.9352 32 1 5.7351 0.3104 1.0697 33 1 7.2646 1.2153 1.1738 34 1 6.0299 1.3056 3.3219 35 1 4.6288 2.0184 2.4866 36 1 7.4236 3.2368 2.6327 37 1 5.1278 4.5228 3.8992 38 1 4.8072 5.4332 7.0922 39 1 6.3393 5.1934 1.5632 40 1 4.8094 4.2890 1.4598 41 1 7.4452 3.4855 0.1463 42 1 6.0445 4.1985 -0.6886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485234183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:55 Heat of formation + Delta-G solvation = -53.954235 kcal Electronic energy + Delta-G solvation = -22082.305183 eV Core-core repulsion = 18870.524482 eV Total energy + Delta-G solvation = -3211.780700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54780 -38.33794 -37.09749 -35.07497 -33.28515 -31.15923 -30.65606 -28.97946 -27.88424 -26.36508 -25.75233 -23.51775 -22.22934 -21.30954 -19.91911 -18.69529 -17.20337 -17.04587 -16.56619 -16.43303 -15.60404 -15.38423 -15.02755 -14.47884 -14.08902 -13.97374 -13.45063 -13.18819 -13.12826 -12.80193 -12.37718 -12.31871 -12.15091 -11.94824 -11.71624 -11.57073 -11.52295 -11.01117 -10.85131 -10.56037 -10.33049 -10.11320 -10.06998 -9.93207 -9.63268 -9.55281 -9.31345 -8.79816 -8.47058 -6.90963 -5.74315 -3.01853 2.66543 2.77982 3.45120 3.50696 3.52211 3.83477 4.51824 4.61223 4.83924 5.00042 5.01846 5.06145 5.07864 5.14141 5.19868 5.22756 5.38628 5.47663 5.55383 5.63130 5.67775 5.77743 5.82361 5.92252 5.99348 6.07445 6.15326 6.33691 6.47386 6.54329 6.63307 6.71193 6.84785 6.93470 7.07466 7.21552 7.45469 7.73666 8.28687 8.45170 9.56059 10.14899 10.49409 11.48733 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.004893 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.245306 B = 5721.163414 C = 6298.196491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.516 3.484 5 O -0.517 6.517 6 N -0.602 5.602 7 C 0.064 3.936 8 C 0.156 3.844 9 C -0.140 4.140 10 C -0.125 4.125 11 C 0.179 3.821 12 N -0.725 5.725 13 C -0.234 4.234 14 H 0.069 0.931 15 C -0.015 4.015 16 N -0.936 5.936 17 Si 0.904 3.096 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.144 4.144 22 C -0.122 4.122 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.382 0.618 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -2.717 -16.867 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.302 3.698 5 O -0.392 6.392 6 N -0.338 5.338 7 C -0.078 4.078 8 C 0.054 3.946 9 C -0.179 4.179 10 C -0.166 4.166 11 C 0.069 3.931 12 N -0.366 5.366 13 C -0.365 4.365 14 H 0.087 0.913 15 C -0.211 4.211 16 N -0.585 5.585 17 Si 0.736 3.264 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.182 4.182 22 C -0.160 4.160 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.215 0.785 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.886 -3.525 -16.710 18.064 hybrid contribution -0.092 0.404 1.042 1.121 sum -5.978 -3.121 -15.668 17.057 Atomic orbital electron populations 1.22824 0.80587 1.03174 1.00074 1.88010 1.19612 1.25454 1.95398 1.22326 0.92199 0.86727 1.02371 1.20081 0.88378 0.84291 0.77023 1.90658 1.74192 1.26347 1.48054 1.47770 1.06630 1.05716 1.73654 1.22204 0.98242 0.85102 1.02296 1.21053 0.78041 0.96725 0.98754 1.22038 1.00695 1.00490 0.94696 1.22120 1.00368 0.98916 0.95183 1.20208 0.96558 0.90480 0.85814 1.42412 1.36420 1.55467 1.02262 1.19258 1.08907 1.22515 0.85836 0.91286 1.24707 0.98467 1.00167 0.97710 1.69654 1.27364 1.35349 1.26101 0.86220 0.78728 0.77797 0.83675 1.21790 1.21835 1.20789 1.22293 1.02590 0.99408 0.93930 1.21835 1.01114 0.94703 0.98343 0.93701 0.94010 0.89209 0.90097 0.90587 0.91137 0.89494 0.92098 0.91462 0.89806 0.91757 0.92420 0.93214 0.93894 0.78521 0.93633 0.91864 0.90499 0.90388 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.37 -5.02 10.24 -55.14 -0.56 -5.58 16 3 C 0.04 0.51 5.05 36.00 0.18 0.69 16 4 C 0.52 7.71 7.29 -10.98 -0.08 7.63 16 5 O -0.52 -9.79 14.20 -14.35 -0.20 -9.99 16 6 N -0.60 -7.82 2.28 -173.94 -0.40 -8.21 16 7 C 0.06 0.63 8.06 59.84 0.48 1.11 16 8 C 0.16 2.12 3.05 -67.94 -0.21 1.92 16 9 C -0.14 -2.29 5.14 -26.73 -0.14 -2.42 16 10 C -0.13 -2.41 5.34 -26.73 -0.14 -2.55 16 11 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 12 N -0.73 -18.13 5.12 -53.43 -0.27 -18.41 16 13 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 14 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 15 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 16 N -0.94 -28.27 13.06 55.49 0.72 -27.55 16 17 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.14 -2.21 4.84 -26.73 -0.13 -2.34 16 22 C -0.12 -1.48 4.90 -26.74 -0.13 -1.61 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 27 H 0.08 0.65 7.42 -51.93 -0.39 0.27 16 28 H 0.07 0.77 6.49 -51.93 -0.34 0.44 16 29 H 0.09 0.75 5.26 -51.93 -0.27 0.48 16 30 H 0.06 0.43 6.69 -51.93 -0.35 0.09 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.53 5.76 -51.93 -0.30 1.23 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.00 7.46 -51.93 -0.39 0.61 16 36 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.12 3.94 -51.93 -0.20 0.92 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.64 6.68 -51.93 -0.35 0.29 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -34.09 323.61 -7.01 -41.10 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.67 Total: 6.18 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 0.52 Total: -0.07 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.05 Total: -54.16 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.77 Total: -15.57 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.09 -7.01 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485234183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.854 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds