Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00207 * 2 1 4 4 C 1.50697 * 109.46979 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00384 * 359.72049 * 4 3 2 6 6 N 1.34783 * 119.99969 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99726 * 0.02562 * 6 4 3 8 8 C 1.46498 * 120.00206 * 179.97438 * 6 4 3 9 9 C 1.53001 * 109.47350 * 305.78542 * 8 6 4 10 10 C 1.52997 * 109.46966 * 299.99580 * 9 8 6 11 11 C 1.53004 * 109.47273 * 300.00365 * 10 9 8 12 12 N 1.46496 * 109.47373 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00068 * 84.99944 * 12 11 10 14 14 H 1.08004 * 119.99602 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00248 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00101 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47337 * 89.99255 * 17 15 13 19 19 H 1.48503 * 109.46926 * 209.99299 * 17 15 13 20 20 H 1.48502 * 109.46832 * 329.99612 * 17 15 13 21 21 C 1.52999 * 109.46977 * 59.99617 * 11 10 9 22 22 C 1.52992 * 109.47173 * 185.77890 * 8 6 4 23 23 H 1.08998 * 109.47070 * 300.00356 * 1 2 3 24 24 H 1.09006 * 109.46919 * 59.99786 * 1 2 3 25 25 H 1.08999 * 109.47626 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47182 * 59.99885 * 3 2 1 27 27 H 1.09002 * 109.46703 * 299.99800 * 3 2 1 28 28 H 1.09006 * 109.47213 * 84.07919 * 7 6 4 29 29 H 1.08999 * 109.47398 * 204.07899 * 7 6 4 30 30 H 1.09006 * 109.47272 * 324.08233 * 7 6 4 31 31 H 1.09005 * 109.46537 * 65.77829 * 8 6 4 32 32 H 1.08996 * 109.47388 * 59.99685 * 9 8 6 33 33 H 1.09000 * 109.47056 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47764 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47455 * 59.99887 * 10 9 8 36 36 H 1.09000 * 109.47164 * 299.99786 * 11 10 9 37 37 H 0.97001 * 120.00292 * 265.00097 * 12 11 10 38 38 H 0.96998 * 120.00232 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.47163 * 180.02562 * 21 11 10 40 40 H 1.09001 * 109.47105 * 60.00873 * 21 11 10 41 41 H 1.09000 * 109.47360 * 180.02562 * 22 8 6 42 42 H 1.09001 * 109.47564 * 300.00344 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0062 6 7 4.2766 2.2968 0.0002 7 6 3.6466 3.6193 -0.0003 8 6 5.7370 2.1811 0.0014 9 6 6.1779 1.3009 1.1727 10 6 5.7154 1.9322 2.4873 11 6 6.3370 3.3228 2.6319 12 7 5.8937 3.9276 3.8904 13 6 6.5603 3.6525 5.0544 14 1 7.4127 2.9893 5.0447 15 6 6.1399 4.2250 6.2470 16 7 5.1008 5.0328 6.2589 17 14 7.0498 3.8503 7.8349 18 1 8.1365 4.8436 8.0290 19 1 6.1032 3.9228 8.9768 20 1 7.6331 2.4866 7.7611 21 6 5.8960 4.2028 1.4605 22 6 6.3586 3.5715 0.1459 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.3946 3.9022 1.0218 29 1 4.3373 4.3507 -0.4198 30 1 2.7389 3.5892 -0.6031 31 1 6.0665 1.7312 -0.9352 32 1 5.7351 0.3104 1.0697 33 1 7.2646 1.2153 1.1738 34 1 6.0299 1.3056 3.3219 35 1 4.6288 2.0184 2.4866 36 1 7.4236 3.2368 2.6327 37 1 5.1278 4.5228 3.8992 38 1 4.8072 5.4332 7.0922 39 1 6.3393 5.1934 1.5632 40 1 4.8094 4.2890 1.4598 41 1 7.4452 3.4855 0.1463 42 1 6.0445 4.1985 -0.6886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485234183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = -77.196914 kcal Electronic energy + Delta-G solvation = -22083.313061 eV Core-core repulsion = 18870.524482 eV Total energy + Delta-G solvation = -3212.788579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67521 -39.46752 -38.18619 -36.57973 -34.89445 -32.88128 -31.96133 -30.23245 -29.09891 -27.38460 -26.70869 -25.40479 -23.56812 -22.60233 -21.29807 -19.87810 -19.10991 -18.11164 -17.57729 -17.42759 -16.94163 -16.45778 -16.43892 -15.81250 -15.44000 -15.24715 -15.12306 -14.68272 -14.13188 -13.95801 -13.79707 -13.54236 -13.23403 -13.06913 -13.03055 -12.82536 -12.79807 -12.64576 -12.31327 -12.16126 -12.06943 -11.90445 -11.44644 -11.33411 -11.08245 -10.91135 -10.75162 -10.39977 -9.54313 -8.97828 -7.94989 -5.21781 1.45095 1.46161 1.54463 1.58672 1.82857 2.55250 3.00613 3.37983 3.56811 3.77384 3.88234 3.94148 4.11272 4.23766 4.29010 4.33959 4.38696 4.43158 4.50407 4.56131 4.60665 4.61816 4.65619 4.73816 4.85284 4.86071 4.92553 5.07927 5.15129 5.24348 5.27561 5.30974 5.47786 5.54921 5.64845 5.72909 6.05765 6.28969 6.44849 7.21152 7.34645 8.12542 8.35826 9.28473 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.004893 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.245306 B = 5721.163414 C = 6298.196491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.046 3.954 4 C 0.503 3.497 5 O -0.569 6.569 6 N -0.599 5.599 7 C 0.056 3.944 8 C 0.156 3.844 9 C -0.133 4.133 10 C -0.111 4.111 11 C 0.175 3.825 12 N -0.736 5.736 13 C -0.238 4.238 14 H 0.067 0.933 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.966 3.034 18 H -0.284 1.284 19 H -0.295 1.295 20 H -0.276 1.276 21 C -0.136 4.136 22 C -0.109 4.109 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.020 0.980 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -1.672 -18.721 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.034 4.034 4 C 0.292 3.708 5 O -0.448 6.448 6 N -0.333 5.333 7 C -0.085 4.085 8 C 0.054 3.946 9 C -0.172 4.172 10 C -0.152 4.152 11 C 0.066 3.934 12 N -0.375 5.375 13 C -0.371 4.371 14 H 0.085 0.915 15 C -0.265 4.265 16 N -0.619 5.619 17 Si 0.796 3.204 18 H -0.211 1.211 19 H -0.221 1.221 20 H -0.201 1.201 21 C -0.174 4.174 22 C -0.147 4.147 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.132 0.868 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.118 -2.464 -18.601 19.735 hybrid contribution -0.036 0.038 1.593 1.594 sum -6.154 -2.427 -17.008 18.249 Atomic orbital electron populations 1.23030 0.78405 1.04141 1.01545 1.87957 1.22104 1.26813 1.95740 1.22428 0.89801 0.86587 1.04537 1.20805 0.89991 0.83947 0.76098 1.90630 1.75321 1.28298 1.50562 1.47880 1.06376 1.06636 1.72445 1.22439 1.00081 0.83589 1.02386 1.21044 0.78870 0.97061 0.97660 1.21931 1.01104 0.99887 0.94298 1.21902 0.99291 0.98250 0.95717 1.20439 0.95955 0.91245 0.85716 1.42603 1.36019 1.55570 1.03335 1.19573 1.08649 1.21641 0.87191 0.91485 1.25447 0.99625 1.00724 1.00702 1.69789 1.28896 1.36666 1.26504 0.85244 0.77542 0.77841 0.79801 1.21141 1.22117 1.20114 1.22222 1.03295 0.98403 0.93463 1.21794 1.01560 0.93837 0.97533 0.92973 0.91678 0.88676 0.89101 0.86786 0.92434 0.87653 0.88685 0.90164 0.91951 0.90816 0.96079 0.94568 0.94799 0.79510 0.94051 0.91919 0.89566 0.89494 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.64 16 2 O -0.41 -10.79 10.24 -129.94 -1.33 -12.12 16 3 C 0.05 0.98 5.05 71.23 0.36 1.34 16 4 C 0.50 14.58 7.29 87.65 0.64 15.22 16 5 O -0.57 -21.87 14.20 16.02 0.23 -21.64 16 6 N -0.60 -14.28 2.28 -822.60 -1.87 -16.16 16 7 C 0.06 0.90 8.06 127.77 1.03 1.93 16 8 C 0.16 3.91 3.05 44.99 0.14 4.05 16 9 C -0.13 -4.34 5.14 30.59 0.16 -4.18 16 10 C -0.11 -4.38 5.34 30.59 0.16 -4.22 16 11 C 0.17 6.90 2.77 44.99 0.12 7.02 16 12 N -0.74 -37.31 5.12 -322.94 -1.65 -38.96 16 13 C -0.24 -13.56 9.93 84.03 0.83 -12.72 16 14 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 15 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 16 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 17 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 18 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 19 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 C -0.14 -3.89 4.84 30.59 0.15 -3.74 16 22 C -0.11 -2.28 4.90 30.59 0.15 -2.13 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.09 1.75 8.11 -2.39 -0.02 1.73 16 27 H 0.11 1.53 7.42 -2.39 -0.02 1.51 16 28 H 0.06 1.12 6.49 -2.38 -0.02 1.11 16 29 H 0.11 1.32 5.26 -2.39 -0.01 1.31 16 30 H 0.09 0.91 6.69 -2.38 -0.02 0.90 16 31 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.06 2.35 5.76 -2.39 -0.01 2.34 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 1.49 7.46 -2.39 -0.02 1.47 16 36 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 37 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 38 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.09 2.34 3.94 -2.39 -0.01 2.33 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 1.47 6.68 -2.39 -0.02 1.45 16 Total: -1.00 -76.60 323.61 3.43 -73.17 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.29 Total: 25.11 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.46 Total: 0.45 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.25 Total: -114.06 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.10 Total: -33.77 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.60 3.43 -73.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485234183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.026 kcal (2) G-P(sol) polarization free energy of solvation -76.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds