Wall clock time and date at job start Mon Mar 30 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47698 * 2 1 4 4 C 1.42894 * 114.00251 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47480 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47565 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00029 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00550 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99795 * 0.02562 * 8 6 5 10 10 C 1.46497 * 120.00541 * 179.97438 * 8 6 5 11 11 C 1.53784 * 113.61569 * 240.00166 * 10 8 6 12 12 C 1.53787 * 87.07923 * 220.01663 * 11 10 8 13 13 N 1.46501 * 113.61128 * 139.98386 * 12 11 10 14 14 C 1.36937 * 119.99940 * 155.00138 * 13 12 11 15 15 H 1.07995 * 119.99838 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99758 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99932 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99944 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47103 * 89.99533 * 18 16 14 20 20 H 1.48494 * 109.46910 * 209.99950 * 18 16 14 21 21 H 1.48504 * 109.46769 * 329.99638 * 18 16 14 22 22 C 1.53779 * 113.61581 * 142.50385 * 10 8 6 23 23 H 1.08997 * 109.47116 * 300.00979 * 1 2 3 24 24 H 1.09005 * 109.46902 * 59.99875 * 1 2 3 25 25 H 1.08994 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47116 * 239.99021 * 2 1 3 27 27 H 1.09005 * 109.46902 * 120.00125 * 2 1 3 28 28 H 1.09005 * 109.47247 * 59.99901 * 4 3 2 29 29 H 1.08999 * 109.47297 * 300.00130 * 4 3 2 30 30 H 1.08999 * 109.47305 * 59.99857 * 5 4 3 31 31 H 1.08999 * 109.47052 * 300.00391 * 5 4 3 32 32 H 1.09004 * 109.46666 * 269.99777 * 9 8 6 33 33 H 1.08999 * 109.47266 * 29.99467 * 9 8 6 34 34 H 1.08995 * 109.47412 * 150.00054 * 9 8 6 35 35 H 1.09002 * 112.90477 * 11.25212 * 10 8 6 36 36 H 1.09004 * 113.61451 * 105.47149 * 11 10 8 37 37 H 1.08994 * 113.61477 * 334.56451 * 11 10 8 38 38 H 1.09000 * 113.61529 * 270.88430 * 12 11 10 39 39 H 0.97005 * 120.00129 * 334.99728 * 13 12 11 40 40 H 0.97007 * 119.99563 * 179.97438 * 17 16 14 41 41 H 1.09006 * 113.61307 * 25.43652 * 22 10 8 42 42 H 1.09007 * 113.61642 * 254.53409 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4599 0.0006 5 6 3.8256 2.9381 -0.0001 6 6 5.3279 3.0570 -0.0001 7 8 6.0153 2.0578 0.0008 8 7 5.9076 4.2737 -0.0012 9 6 5.0773 5.4808 -0.0018 10 6 7.3680 4.3893 -0.0007 11 6 7.9260 5.1416 1.2190 12 6 8.9235 5.8051 0.2547 13 7 9.1508 7.2256 0.5314 14 6 10.3220 7.8198 0.1439 15 1 11.0784 7.2411 -0.3654 16 6 10.5371 9.1660 0.4056 17 7 9.6151 9.8713 1.0258 18 14 12.1346 9.9768 -0.1237 19 1 11.9814 10.5232 -1.4961 20 1 12.4644 11.0796 0.8143 21 1 13.2279 8.9718 -0.1102 22 6 7.8943 5.5514 -0.8594 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8341 0.9762 -0.8892 29 1 3.8333 0.9765 0.8908 30 1 3.4225 3.4223 0.8894 31 1 3.4233 3.4212 -0.8905 32 1 4.8712 5.7793 -1.0297 33 1 4.1383 5.2761 0.5124 34 1 5.6048 6.2849 0.5112 35 1 7.8688 3.4409 -0.1953 36 1 8.3976 4.4907 1.9553 37 1 7.2171 5.8404 1.6628 38 1 9.8494 5.2437 0.1299 39 1 8.4715 7.7454 0.9891 40 1 9.7656 10.8120 1.2090 41 1 7.1766 6.3623 -0.9838 42 1 8.3403 5.2313 -1.8012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486457316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:53 Heat of formation + Delta-G solvation = -54.388791 kcal Electronic energy + Delta-G solvation = -20522.180286 eV Core-core repulsion = 17310.380742 eV Total energy + Delta-G solvation = -3211.799544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23008 -38.48329 -37.79341 -34.80774 -33.24754 -32.54265 -30.54028 -29.81143 -26.98527 -25.22412 -24.95549 -23.75457 -23.07292 -21.82469 -19.29927 -18.76698 -17.54321 -17.11108 -16.71053 -16.51363 -15.83242 -15.58055 -14.80061 -14.53360 -14.34402 -14.12013 -13.66080 -13.12274 -13.00233 -12.85123 -12.66460 -12.41040 -12.25091 -12.02755 -11.93135 -11.77947 -11.35369 -11.27015 -11.24879 -10.90971 -10.60328 -10.47750 -10.26929 -10.02613 -9.85286 -9.77824 -9.54942 -8.91719 -8.45908 -7.01033 -5.82228 -3.11099 2.60843 2.86405 3.41111 3.46638 3.48081 3.56278 4.53706 4.56471 4.71980 4.74351 4.81732 4.96380 5.07678 5.08676 5.13205 5.19069 5.28003 5.35119 5.42192 5.43577 5.50691 5.57030 5.57663 5.66563 5.76332 5.78750 5.84300 5.95205 6.13834 6.27245 6.32419 6.42638 6.54781 6.78260 6.91981 7.01561 7.49468 7.66967 8.17355 8.36234 9.47643 10.04149 10.38847 11.40100 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.062852 B = 0.002730 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.381988 B =10254.024260 C =10486.750735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.138 4.138 6 C 0.516 3.484 7 O -0.550 6.550 8 N -0.597 5.597 9 C 0.073 3.927 10 C 0.115 3.885 11 C -0.163 4.163 12 C 0.169 3.831 13 N -0.710 5.710 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.174 4.174 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.083 0.917 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.406 -15.783 -1.916 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.178 4.178 6 C 0.304 3.696 7 O -0.428 6.428 8 N -0.328 5.328 9 C -0.070 4.070 10 C 0.012 3.988 11 C -0.203 4.203 12 C 0.057 3.943 13 N -0.347 5.347 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.216 4.216 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.964 -16.048 -1.958 22.720 hybrid contribution 0.688 0.627 -0.158 0.944 sum -15.276 -15.421 -2.116 21.809 Atomic orbital electron populations 1.21749 0.93732 1.02223 1.03143 1.22442 0.95458 0.83648 1.00267 1.87801 1.21292 1.26702 1.95583 1.22118 0.80454 0.95585 1.01686 1.21508 0.92978 0.97874 1.05469 1.20370 0.89924 0.83216 0.76124 1.90684 1.65383 1.36173 1.50609 1.47862 1.07258 1.05679 1.72008 1.21840 0.94993 0.88007 1.02199 1.22621 0.78075 0.99450 0.98646 1.23928 0.99819 0.99296 0.97246 1.21343 0.94052 0.86990 0.91956 1.42353 1.19638 1.04007 1.68747 1.19313 0.94552 0.92696 1.30959 0.90992 1.24771 0.98317 0.96674 1.01150 1.69657 1.33972 1.07891 1.46543 0.86172 0.83052 0.79061 0.77796 1.21682 1.21763 1.20696 1.24325 1.01038 0.96643 0.99623 0.91831 0.91849 0.91121 0.93337 0.93324 0.92476 0.92447 0.88080 0.88135 0.92295 0.91128 0.89926 0.86865 0.91763 0.90062 0.90259 0.78112 0.93447 0.89840 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.48 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.19 10.34 -35.23 -0.36 -4.56 16 4 C 0.08 0.85 5.23 37.16 0.19 1.04 16 5 C -0.14 -1.43 4.62 -27.89 -0.13 -1.56 16 6 C 0.52 7.09 7.67 -10.99 -0.08 7.00 16 7 O -0.55 -9.38 15.47 5.55 0.09 -9.29 16 8 N -0.60 -8.07 3.08 -173.00 -0.53 -8.60 16 9 C 0.07 0.79 8.84 59.85 0.53 1.32 16 10 C 0.12 1.78 4.20 -67.12 -0.28 1.50 16 11 C -0.16 -2.70 7.37 -25.91 -0.19 -2.89 16 12 C 0.17 3.29 4.48 -67.12 -0.30 2.99 16 13 N -0.71 -17.32 5.40 -52.64 -0.28 -17.61 16 14 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.17 -2.94 7.30 -25.92 -0.19 -3.13 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 29 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.10 0.91 7.40 -51.93 -0.38 0.52 16 31 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.59 6.44 -51.93 -0.33 0.26 16 34 H 0.08 0.99 6.33 -51.93 -0.33 0.66 16 35 H 0.11 1.84 7.24 -51.93 -0.38 1.46 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.35 6.89 -51.93 -0.36 0.99 16 38 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 39 H 0.38 9.89 7.92 -40.82 -0.32 9.57 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.08 1.44 6.72 -51.93 -0.35 1.09 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -31.63 343.00 -7.36 -38.99 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.06 Total: 6.58 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.07 Total: -0.87 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.09 Total: -53.12 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.28 Total: -13.85 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.63 -7.36 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486457316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.398 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds