Wall clock time and date at job start Mon Mar 30 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47698 * 2 1 4 4 C 1.42894 * 114.00251 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47480 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47565 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00029 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00550 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99795 * 0.02562 * 8 6 5 10 10 C 1.46497 * 120.00541 * 179.97438 * 8 6 5 11 11 C 1.53784 * 113.61569 * 240.00166 * 10 8 6 12 12 C 1.53787 * 87.07923 * 220.01663 * 11 10 8 13 13 N 1.46501 * 113.61128 * 139.98386 * 12 11 10 14 14 C 1.36937 * 119.99940 * 155.00138 * 13 12 11 15 15 H 1.07995 * 119.99838 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99758 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99932 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99944 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47103 * 89.99533 * 18 16 14 20 20 H 1.48494 * 109.46910 * 209.99950 * 18 16 14 21 21 H 1.48504 * 109.46769 * 329.99638 * 18 16 14 22 22 C 1.53779 * 113.61581 * 142.50385 * 10 8 6 23 23 H 1.08997 * 109.47116 * 300.00979 * 1 2 3 24 24 H 1.09005 * 109.46902 * 59.99875 * 1 2 3 25 25 H 1.08994 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47116 * 239.99021 * 2 1 3 27 27 H 1.09005 * 109.46902 * 120.00125 * 2 1 3 28 28 H 1.09005 * 109.47247 * 59.99901 * 4 3 2 29 29 H 1.08999 * 109.47297 * 300.00130 * 4 3 2 30 30 H 1.08999 * 109.47305 * 59.99857 * 5 4 3 31 31 H 1.08999 * 109.47052 * 300.00391 * 5 4 3 32 32 H 1.09004 * 109.46666 * 269.99777 * 9 8 6 33 33 H 1.08999 * 109.47266 * 29.99467 * 9 8 6 34 34 H 1.08995 * 109.47412 * 150.00054 * 9 8 6 35 35 H 1.09002 * 112.90477 * 11.25212 * 10 8 6 36 36 H 1.09004 * 113.61451 * 105.47149 * 11 10 8 37 37 H 1.08994 * 113.61477 * 334.56451 * 11 10 8 38 38 H 1.09000 * 113.61529 * 270.88430 * 12 11 10 39 39 H 0.97005 * 120.00129 * 334.99728 * 13 12 11 40 40 H 0.97007 * 119.99563 * 179.97438 * 17 16 14 41 41 H 1.09006 * 113.61307 * 25.43652 * 22 10 8 42 42 H 1.09007 * 113.61642 * 254.53409 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4599 0.0006 5 6 3.8256 2.9381 -0.0001 6 6 5.3279 3.0570 -0.0001 7 8 6.0153 2.0578 0.0008 8 7 5.9076 4.2737 -0.0012 9 6 5.0773 5.4808 -0.0018 10 6 7.3680 4.3893 -0.0007 11 6 7.9260 5.1416 1.2190 12 6 8.9235 5.8051 0.2547 13 7 9.1508 7.2256 0.5314 14 6 10.3220 7.8198 0.1439 15 1 11.0784 7.2411 -0.3654 16 6 10.5371 9.1660 0.4056 17 7 9.6151 9.8713 1.0258 18 14 12.1346 9.9768 -0.1237 19 1 11.9814 10.5232 -1.4961 20 1 12.4644 11.0796 0.8143 21 1 13.2279 8.9718 -0.1102 22 6 7.8943 5.5514 -0.8594 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8341 0.9762 -0.8892 29 1 3.8333 0.9765 0.8908 30 1 3.4225 3.4223 0.8894 31 1 3.4233 3.4212 -0.8905 32 1 4.8712 5.7793 -1.0297 33 1 4.1383 5.2761 0.5124 34 1 5.6048 6.2849 0.5112 35 1 7.8688 3.4409 -0.1953 36 1 8.3976 4.4907 1.9553 37 1 7.2171 5.8404 1.6628 38 1 9.8494 5.2437 0.1299 39 1 8.4715 7.7454 0.9891 40 1 9.7656 10.8120 1.2090 41 1 7.1766 6.3623 -0.9838 42 1 8.3403 5.2313 -1.8012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486457316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:52 Heat of formation + Delta-G solvation = -75.137472 kcal Electronic energy + Delta-G solvation = -20523.080017 eV Core-core repulsion = 17310.380742 eV Total energy + Delta-G solvation = -3212.699274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39780 -39.61683 -38.77834 -36.20523 -34.92136 -33.39249 -31.96845 -31.01397 -27.99538 -26.70569 -26.36790 -25.21989 -23.67424 -23.17009 -20.65918 -19.99522 -19.04177 -18.52970 -17.65504 -17.51322 -16.89175 -16.49658 -16.37838 -16.00692 -15.46016 -15.07338 -14.96452 -14.78649 -14.18202 -14.02380 -13.52786 -13.30991 -13.22537 -13.14123 -13.13283 -13.00608 -12.77596 -12.61159 -12.25222 -12.14197 -12.03549 -11.99412 -11.95981 -11.67633 -11.42574 -10.89469 -10.83027 -10.60076 -9.61188 -8.99109 -7.94878 -5.22974 1.48736 1.49438 1.54371 1.58002 1.86772 2.56835 2.75340 3.36755 3.59023 3.75718 3.80386 3.94897 3.99912 4.02233 4.17816 4.21343 4.28147 4.31516 4.38005 4.47289 4.50782 4.65060 4.72767 4.75439 4.82868 4.84483 4.88251 4.92252 4.99242 5.04988 5.08982 5.13979 5.28881 5.43023 5.51838 5.64894 6.18791 6.27236 6.41629 7.09749 7.34034 8.08918 8.33034 9.28072 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.062852 B = 0.002730 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.381988 B =10254.024260 C =10486.750735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.405 6.405 4 C 0.081 3.919 5 C -0.129 4.129 6 C 0.513 3.487 7 O -0.588 6.588 8 N -0.598 5.598 9 C 0.068 3.932 10 C 0.130 3.870 11 C -0.150 4.150 12 C 0.152 3.848 13 N -0.722 5.722 14 C -0.244 4.244 15 H 0.076 0.924 16 C -0.075 4.075 17 N -0.967 5.967 18 Si 0.971 3.029 19 H -0.287 1.287 20 H -0.296 1.296 21 H -0.271 1.271 22 C -0.160 4.160 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.082 0.918 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.516 -16.547 -2.383 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.325 6.325 4 C 0.004 3.996 5 C -0.168 4.168 6 C 0.303 3.697 7 O -0.469 6.469 8 N -0.328 5.328 9 C -0.074 4.074 10 C 0.026 3.974 11 C -0.190 4.190 12 C 0.041 3.959 13 N -0.360 5.360 14 C -0.376 4.376 15 H 0.094 0.906 16 C -0.267 4.267 17 N -0.618 5.618 18 Si 0.801 3.199 19 H -0.215 1.215 20 H -0.223 1.223 21 H -0.196 1.196 22 C -0.202 4.202 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.096 -16.855 -2.445 24.131 hybrid contribution 0.987 0.754 -0.020 1.243 sum -16.109 -16.100 -2.464 22.908 Atomic orbital electron populations 1.21761 0.92403 1.03446 1.02906 1.22678 0.96581 0.82728 1.00786 1.87779 1.20864 1.28201 1.95622 1.22026 0.80756 0.95835 1.00963 1.21471 0.90123 0.97953 1.07253 1.20944 0.91263 0.82465 0.74988 1.90670 1.66516 1.37394 1.52290 1.47900 1.06490 1.06742 1.71700 1.22039 0.95591 0.86478 1.03268 1.22258 0.79763 0.98351 0.97041 1.23772 0.98897 0.99031 0.97306 1.21631 0.95161 0.84686 0.94375 1.42483 1.18698 1.05804 1.68997 1.19685 0.95342 0.92943 1.29636 0.90605 1.25541 1.01478 0.97484 1.02219 1.69801 1.35782 1.07777 1.48418 0.85169 0.79774 0.77935 0.77052 1.21459 1.22302 1.19582 1.24087 0.99966 0.97159 0.98980 0.92055 0.92047 0.89218 0.92827 0.92851 0.93258 0.93273 0.86135 0.86222 0.91153 0.88077 0.91205 0.87503 0.91371 0.89923 0.90525 0.79206 0.94014 0.89981 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.40 -7.90 10.34 -148.98 -1.54 -9.44 16 4 C 0.08 1.63 5.23 71.98 0.38 2.01 16 5 C -0.13 -2.32 4.62 29.85 0.14 -2.18 16 6 C 0.51 13.22 7.67 87.66 0.67 13.89 16 7 O -0.59 -19.57 15.47 -3.05 -0.05 -19.62 16 8 N -0.60 -15.05 3.08 -819.64 -2.53 -17.58 16 9 C 0.07 1.31 8.84 127.77 1.13 2.44 16 10 C 0.13 3.87 4.20 45.52 0.19 4.06 16 11 C -0.15 -4.86 7.37 31.12 0.23 -4.63 16 12 C 0.15 5.85 4.48 45.52 0.20 6.05 16 13 N -0.72 -35.39 5.40 -320.44 -1.73 -37.12 16 14 C -0.24 -13.33 9.97 84.03 0.84 -12.49 16 15 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 16 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 17 N -0.97 -58.03 13.06 21.65 0.28 -57.74 16 18 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C -0.16 -5.27 7.30 31.12 0.23 -5.04 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 29 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 30 H 0.12 1.75 7.40 -2.39 -0.02 1.73 16 31 H 0.12 1.75 8.11 -2.39 -0.02 1.74 16 32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.34 6.44 -2.39 -0.02 1.32 16 34 H 0.07 1.56 6.33 -2.39 -0.02 1.55 16 35 H 0.11 3.39 7.24 -2.39 -0.02 3.37 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 2.68 6.89 -2.39 -0.02 2.66 16 38 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 39 H 0.38 19.55 7.92 -92.70 -0.73 18.82 16 40 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 41 H 0.08 2.75 6.72 -2.38 -0.02 2.73 16 42 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -67.40 343.00 2.42 -64.99 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.26 Total: 28.21 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.69 Total: 0.64 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -3.98 Total: -112.44 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -1.59 Total: -29.05 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.40 2.42 -64.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486457316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.152 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds