Wall clock time and date at job start Mon Mar 30 2020 01:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99884 * 2 1 4 4 C 1.53002 * 112.84843 * 294.86398 * 3 2 1 5 5 C 1.50699 * 109.46934 * 290.79083 * 4 3 2 6 6 O 1.21282 * 120.00108 * 356.73498 * 5 4 3 7 7 N 1.34782 * 119.99698 * 177.00271 * 5 4 3 8 8 C 1.46499 * 119.99514 * 179.72307 * 7 5 4 9 9 C 1.53002 * 109.46851 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47401 * 180.02562 * 9 8 7 11 11 C 1.46498 * 120.00296 * 90.00115 * 10 9 8 12 12 C 1.36936 * 119.99704 * 270.00557 * 10 9 8 13 13 H 1.08002 * 120.00631 * 22.25340 * 12 10 9 14 14 C 1.38820 * 119.99735 * 202.25718 * 12 10 9 15 15 N 1.31612 * 119.99894 * 10.90059 * 14 12 10 16 16 Si 1.86804 * 119.99988 * 190.90222 * 14 12 10 17 17 H 1.48504 * 109.47043 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46701 * 119.99890 * 16 14 12 19 19 H 1.48495 * 109.47100 * 240.00157 * 16 14 12 20 20 C 1.53778 * 113.68973 * 66.12753 * 3 2 1 21 21 C 1.53790 * 87.07731 * 89.13009 * 20 3 2 22 22 C 1.53776 * 87.08125 * 25.43074 * 21 20 3 23 23 H 1.09002 * 109.47282 * 296.69136 * 1 2 3 24 24 H 1.09001 * 109.47354 * 56.69870 * 1 2 3 25 25 H 1.09006 * 109.46937 * 176.69820 * 1 2 3 26 26 H 1.09001 * 109.46975 * 170.79109 * 4 3 2 27 27 H 1.08994 * 109.47406 * 50.79593 * 4 3 2 28 28 H 0.96994 * 120.00119 * 359.73636 * 7 5 4 29 29 H 1.08993 * 109.47660 * 300.00695 * 8 7 5 30 30 H 1.09007 * 109.46982 * 60.01106 * 8 7 5 31 31 H 1.08993 * 109.47443 * 300.00689 * 9 8 7 32 32 H 1.09000 * 109.46623 * 60.00307 * 9 8 7 33 33 H 1.08999 * 109.46840 * 93.57982 * 11 10 9 34 34 H 1.08998 * 109.47389 * 213.58192 * 11 10 9 35 35 H 1.09005 * 109.46817 * 333.58475 * 11 10 9 36 36 H 0.97002 * 119.99953 * 179.97438 * 15 14 12 37 37 H 1.08994 * 113.61896 * 203.67284 * 20 3 2 38 38 H 1.08993 * 113.61629 * 334.58642 * 20 3 2 39 39 H 1.09003 * 113.61118 * 270.87965 * 21 20 3 40 40 H 1.09001 * 113.61422 * 139.98586 * 21 20 3 41 41 H 1.08995 * 113.61278 * 220.01901 * 22 21 20 42 42 H 1.09001 * 113.61413 * 89.11519 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7102 2.0893 -1.2793 5 6 2.4485 1.4654 -2.4354 6 8 3.1921 0.5266 -2.2444 7 7 2.2865 1.9542 -3.6810 8 6 3.0089 1.3515 -4.8040 9 6 2.6500 2.0887 -6.0958 10 7 3.3718 1.4857 -7.2189 11 6 2.7681 0.3824 -7.9701 12 6 4.6111 1.9534 -7.5665 13 1 5.2094 2.4872 -6.8430 14 6 5.0983 1.7412 -8.8490 15 7 4.2984 1.2865 -9.7900 16 14 6.8894 2.1012 -9.2390 17 1 7.5717 2.5987 -8.0175 18 1 7.5540 0.8575 -9.7049 19 1 6.9663 3.1326 -10.3045 20 6 1.7408 2.1017 1.2877 21 6 3.0254 1.4720 1.8521 22 6 3.4960 1.3183 0.3963 23 1 -0.3634 0.4616 0.9182 24 1 -0.3634 0.5642 -0.8589 25 1 -0.3633 -1.0260 -0.0592 26 1 2.0342 3.1228 -1.1565 27 1 0.6386 2.0656 -1.4771 28 1 1.6918 2.7051 -3.8338 29 1 4.0819 1.4276 -4.6287 30 1 2.7291 0.3018 -4.8946 31 1 1.5770 2.0130 -6.2713 32 1 2.9300 3.1382 -6.0048 33 1 2.2362 0.7797 -8.8347 34 1 3.5496 -0.2991 -8.3060 35 1 2.0690 -0.1542 -7.3286 36 1 4.6388 1.1387 -10.6862 37 1 1.8059 3.1816 1.1551 38 1 0.8364 1.7922 1.8113 39 1 2.8592 0.5219 2.3600 40 1 3.6312 2.1648 2.4361 41 1 4.0083 0.3764 0.2002 42 1 4.0408 2.1840 0.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492236218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:53 Heat of formation + Delta-G solvation = -35.080734 kcal Electronic energy + Delta-G solvation = -21125.026794 eV Core-core repulsion = 17914.064510 eV Total energy + Delta-G solvation = -3210.962284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51178 -38.67037 -36.00675 -35.68252 -34.06815 -31.49267 -30.49841 -27.85474 -27.20059 -25.85415 -25.60994 -23.84298 -22.61702 -20.64165 -20.10020 -19.53293 -17.03463 -16.65321 -16.41450 -16.11409 -15.32658 -15.22028 -15.02311 -14.63081 -14.30055 -14.03896 -13.62719 -13.43061 -13.20943 -12.63547 -12.50402 -12.33429 -12.07598 -11.76009 -11.47090 -11.16261 -11.13722 -10.96228 -10.88485 -10.85477 -10.58063 -10.30915 -10.26423 -9.92672 -9.91332 -9.68913 -9.36299 -8.63145 -8.54811 -6.79667 -5.73634 -3.20829 2.93747 3.36980 3.39532 3.45987 3.48404 3.61817 4.31053 4.43485 4.51522 4.55518 4.71671 5.01133 5.08665 5.11768 5.19517 5.32321 5.38082 5.41456 5.52625 5.54848 5.59507 5.64974 5.70615 5.84469 5.95087 6.05083 6.14334 6.15341 6.27937 6.65383 6.68253 6.80100 6.94079 7.16355 7.41000 7.71671 7.81417 7.83137 8.37865 8.56412 9.22472 9.84615 10.32440 11.31732 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.003427 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.851940 B = 8169.504209 C = 8636.404249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.348 6.348 3 C 0.110 3.890 4 C -0.161 4.161 5 C 0.508 3.492 6 O -0.526 6.526 7 N -0.729 5.729 8 C 0.096 3.904 9 C 0.144 3.856 10 N -0.599 5.599 11 C 0.163 3.837 12 C -0.257 4.257 13 H 0.070 0.930 14 C 0.002 3.998 15 N -0.908 5.908 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 C -0.165 4.165 21 C -0.139 4.139 22 C -0.111 4.111 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.394 0.606 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.029 0.971 34 H 0.047 0.953 35 H -0.004 1.004 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 3.274 20.668 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.266 6.266 3 C 0.070 3.930 4 C -0.201 4.201 5 C 0.293 3.707 6 O -0.402 6.402 7 N -0.381 5.381 8 C -0.030 4.030 9 C 0.016 3.984 10 N -0.322 5.322 11 C 0.018 3.982 12 C -0.387 4.387 13 H 0.087 0.913 14 C -0.196 4.196 15 N -0.554 5.554 16 Si 0.736 3.264 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.217 1.217 20 C -0.202 4.202 21 C -0.176 4.176 22 C -0.148 4.148 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.227 0.773 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.015 0.985 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.448 2.354 20.573 22.365 hybrid contribution 0.328 0.760 -0.517 0.976 sum -8.120 3.114 20.057 21.861 Atomic orbital electron populations 1.22764 0.81894 1.02730 0.99758 1.88046 1.18858 1.25184 1.94492 1.22211 0.96164 0.83611 0.91064 1.22214 1.01956 1.01240 0.94690 1.20373 0.82661 0.83933 0.83763 1.90720 1.37516 1.27592 1.84368 1.46128 1.48055 1.36259 1.07668 1.22369 0.96701 0.98043 0.85881 1.20831 0.95022 0.95742 0.86836 1.43803 1.18229 1.37241 1.32902 1.20833 0.95566 0.89022 0.92734 1.19263 0.91749 1.32950 0.94725 0.91258 1.25031 0.98377 1.00825 0.95360 1.70083 1.33470 1.50097 1.01710 0.86151 0.84672 0.77559 0.77969 1.20264 1.21538 1.21682 1.23583 0.99163 1.00181 0.97314 1.22820 0.96772 1.01046 0.96991 1.22856 0.93875 1.03698 0.94373 0.94101 0.94045 0.89619 0.87979 0.89061 0.77287 0.91717 0.92405 0.94203 0.93055 0.95273 0.93376 0.98513 0.93753 0.89231 0.91037 0.89921 0.91373 0.89677 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.63 101.05 1.07 1.31 16 2 O -0.35 -4.59 10.28 -37.31 -0.38 -4.97 16 3 C 0.11 1.24 0.39 -89.81 -0.03 1.20 16 4 C -0.16 -1.68 5.15 -27.88 -0.14 -1.82 16 5 C 0.51 7.66 7.62 -10.98 -0.08 7.57 16 6 O -0.53 -10.24 14.70 3.48 0.05 -10.19 16 7 N -0.73 -10.61 5.56 -60.29 -0.33 -10.94 16 8 C 0.10 1.80 6.00 -4.04 -0.02 1.78 16 9 C 0.14 2.89 5.76 -4.04 -0.02 2.86 16 10 N -0.60 -15.21 2.93 -181.12 -0.53 -15.74 16 11 C 0.16 4.09 8.96 59.85 0.54 4.63 16 12 C -0.26 -7.15 9.67 -15.06 -0.15 -7.29 16 13 H 0.07 1.89 7.85 -52.49 -0.41 1.47 16 14 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 15 N -0.91 -26.66 10.56 55.49 0.59 -26.08 16 16 Si 0.91 22.09 29.57 -169.99 -5.03 17.06 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C -0.16 -1.37 7.21 -25.92 -0.19 -1.56 16 21 C -0.14 -1.27 8.02 -25.92 -0.21 -1.48 16 22 C -0.11 -1.30 6.07 -25.92 -0.16 -1.46 16 23 H 0.04 0.31 6.84 -51.93 -0.35 -0.05 16 24 H 0.04 0.36 6.52 -51.93 -0.34 0.02 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.10 0.82 7.99 -51.93 -0.41 0.41 16 27 H 0.09 0.78 6.54 -51.93 -0.34 0.44 16 28 H 0.39 4.41 8.47 -40.82 -0.35 4.06 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.03 0.78 7.46 -51.93 -0.39 0.39 16 34 H 0.05 1.30 7.12 -51.93 -0.37 0.93 16 35 H 0.00 -0.08 8.05 -51.93 -0.42 -0.50 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 0.60 7.99 -51.93 -0.41 0.19 16 38 H 0.07 0.55 6.81 -51.93 -0.35 0.19 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.21 7.98 -51.93 -0.41 0.80 16 42 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -33.39 338.39 -7.10 -40.49 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.07 Total: -0.43 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 0.51 Total: 5.71 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.28 Total: -52.77 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.33 Total: -15.16 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.39 -7.10 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492236218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.406 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds