Wall clock time and date at job start Mon Mar 30 2020 01:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99884 * 2 1 4 4 C 1.53002 * 112.84843 * 294.86398 * 3 2 1 5 5 C 1.50699 * 109.46934 * 290.79083 * 4 3 2 6 6 O 1.21282 * 120.00108 * 356.73498 * 5 4 3 7 7 N 1.34782 * 119.99698 * 177.00271 * 5 4 3 8 8 C 1.46499 * 119.99514 * 179.72307 * 7 5 4 9 9 C 1.53002 * 109.46851 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47401 * 180.02562 * 9 8 7 11 11 C 1.46498 * 120.00296 * 90.00115 * 10 9 8 12 12 C 1.36936 * 119.99704 * 270.00557 * 10 9 8 13 13 H 1.08002 * 120.00631 * 22.25340 * 12 10 9 14 14 C 1.38820 * 119.99735 * 202.25718 * 12 10 9 15 15 N 1.31612 * 119.99894 * 10.90059 * 14 12 10 16 16 Si 1.86804 * 119.99988 * 190.90222 * 14 12 10 17 17 H 1.48504 * 109.47043 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46701 * 119.99890 * 16 14 12 19 19 H 1.48495 * 109.47100 * 240.00157 * 16 14 12 20 20 C 1.53778 * 113.68973 * 66.12753 * 3 2 1 21 21 C 1.53790 * 87.07731 * 89.13009 * 20 3 2 22 22 C 1.53776 * 87.08125 * 25.43074 * 21 20 3 23 23 H 1.09002 * 109.47282 * 296.69136 * 1 2 3 24 24 H 1.09001 * 109.47354 * 56.69870 * 1 2 3 25 25 H 1.09006 * 109.46937 * 176.69820 * 1 2 3 26 26 H 1.09001 * 109.46975 * 170.79109 * 4 3 2 27 27 H 1.08994 * 109.47406 * 50.79593 * 4 3 2 28 28 H 0.96994 * 120.00119 * 359.73636 * 7 5 4 29 29 H 1.08993 * 109.47660 * 300.00695 * 8 7 5 30 30 H 1.09007 * 109.46982 * 60.01106 * 8 7 5 31 31 H 1.08993 * 109.47443 * 300.00689 * 9 8 7 32 32 H 1.09000 * 109.46623 * 60.00307 * 9 8 7 33 33 H 1.08999 * 109.46840 * 93.57982 * 11 10 9 34 34 H 1.08998 * 109.47389 * 213.58192 * 11 10 9 35 35 H 1.09005 * 109.46817 * 333.58475 * 11 10 9 36 36 H 0.97002 * 119.99953 * 179.97438 * 15 14 12 37 37 H 1.08994 * 113.61896 * 203.67284 * 20 3 2 38 38 H 1.08993 * 113.61629 * 334.58642 * 20 3 2 39 39 H 1.09003 * 113.61118 * 270.87965 * 21 20 3 40 40 H 1.09001 * 113.61422 * 139.98586 * 21 20 3 41 41 H 1.08995 * 113.61278 * 220.01901 * 22 21 20 42 42 H 1.09001 * 113.61413 * 89.11519 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7102 2.0893 -1.2793 5 6 2.4485 1.4654 -2.4354 6 8 3.1921 0.5266 -2.2444 7 7 2.2865 1.9542 -3.6810 8 6 3.0089 1.3515 -4.8040 9 6 2.6500 2.0887 -6.0958 10 7 3.3718 1.4857 -7.2189 11 6 2.7681 0.3824 -7.9701 12 6 4.6111 1.9534 -7.5665 13 1 5.2094 2.4872 -6.8430 14 6 5.0983 1.7412 -8.8490 15 7 4.2984 1.2865 -9.7900 16 14 6.8894 2.1012 -9.2390 17 1 7.5717 2.5987 -8.0175 18 1 7.5540 0.8575 -9.7049 19 1 6.9663 3.1326 -10.3045 20 6 1.7408 2.1017 1.2877 21 6 3.0254 1.4720 1.8521 22 6 3.4960 1.3183 0.3963 23 1 -0.3634 0.4616 0.9182 24 1 -0.3634 0.5642 -0.8589 25 1 -0.3633 -1.0260 -0.0592 26 1 2.0342 3.1228 -1.1565 27 1 0.6386 2.0656 -1.4771 28 1 1.6918 2.7051 -3.8338 29 1 4.0819 1.4276 -4.6287 30 1 2.7291 0.3018 -4.8946 31 1 1.5770 2.0130 -6.2713 32 1 2.9300 3.1382 -6.0048 33 1 2.2362 0.7797 -8.8347 34 1 3.5496 -0.2991 -8.3060 35 1 2.0690 -0.1542 -7.3286 36 1 4.6388 1.1387 -10.6862 37 1 1.8059 3.1816 1.1551 38 1 0.8364 1.7922 1.8113 39 1 2.8592 0.5219 2.3600 40 1 3.6312 2.1648 2.4361 41 1 4.0083 0.3764 0.2002 42 1 4.0408 2.1840 0.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492236218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:52 Heat of formation + Delta-G solvation = -58.596771 kcal Electronic energy + Delta-G solvation = -21126.046525 eV Core-core repulsion = 17914.064510 eV Total energy + Delta-G solvation = -3211.982016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44059 -39.82220 -37.81754 -36.49435 -35.62852 -33.34337 -31.66049 -29.39493 -27.96642 -27.91151 -26.38108 -25.29978 -23.81154 -22.37581 -21.33644 -20.34242 -18.80588 -17.99914 -17.52314 -17.04389 -16.84815 -16.42067 -16.12898 -15.97489 -15.54254 -15.14080 -14.98246 -14.77158 -14.66971 -14.25173 -14.09998 -13.24268 -13.12181 -12.97259 -12.82531 -12.69503 -12.52887 -12.50419 -12.25397 -12.15503 -11.97753 -11.92827 -11.78137 -11.66787 -11.10845 -10.78731 -10.66600 -10.28603 -10.00071 -8.85765 -7.86516 -5.36003 1.44748 1.46979 1.57018 1.76833 2.21171 2.51939 2.82728 3.28480 3.48985 3.69224 3.72858 3.79268 3.96016 4.14523 4.22022 4.32517 4.37392 4.43812 4.51526 4.60577 4.65801 4.66363 4.80323 4.81395 4.87651 4.91601 5.04923 5.07488 5.13658 5.21380 5.29369 5.33770 5.42614 5.54615 5.60190 5.68462 6.29533 6.41108 6.69054 7.11566 7.40822 7.81964 8.24601 9.17503 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.003427 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.851940 B = 8169.504209 C = 8636.404249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.385 6.385 3 C 0.097 3.903 4 C -0.151 4.151 5 C 0.502 3.498 6 O -0.577 6.577 7 N -0.717 5.717 8 C 0.118 3.882 9 C 0.148 3.852 10 N -0.619 5.619 11 C 0.176 3.824 12 C -0.267 4.267 13 H 0.071 0.929 14 C -0.052 4.052 15 N -0.938 5.938 16 Si 0.970 3.030 17 H -0.268 1.268 18 H -0.292 1.292 19 H -0.287 1.287 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.125 4.125 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.118 0.882 28 H 0.415 0.585 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.009 0.991 34 H 0.017 0.983 35 H 0.026 0.974 36 H 0.249 0.751 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 5.334 22.465 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.304 6.304 3 C 0.057 3.943 4 C -0.190 4.190 5 C 0.290 3.710 6 O -0.456 6.456 7 N -0.371 5.371 8 C -0.010 4.010 9 C 0.021 3.979 10 N -0.342 5.342 11 C 0.031 3.969 12 C -0.397 4.397 13 H 0.088 0.912 14 C -0.247 4.247 15 N -0.585 5.585 16 Si 0.798 3.202 17 H -0.193 1.193 18 H -0.219 1.219 19 H -0.214 1.214 20 C -0.182 4.182 21 C -0.171 4.171 22 C -0.162 4.162 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.104 0.896 26 H 0.154 0.846 27 H 0.136 0.864 28 H 0.252 0.748 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.133 0.867 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.759 4.458 22.411 24.846 hybrid contribution 0.695 0.079 -1.017 1.234 sum -9.064 4.537 21.394 23.673 Atomic orbital electron populations 1.22937 0.80231 1.03322 1.01190 1.88001 1.20882 1.26757 1.94809 1.22414 0.95485 0.83621 0.92780 1.22281 1.02748 1.02195 0.91820 1.21295 0.81970 0.83144 0.84586 1.90715 1.39790 1.29970 1.85085 1.45920 1.47848 1.36652 1.06636 1.21767 0.95322 0.96957 0.86912 1.20947 0.95807 0.95840 0.85300 1.44049 1.18273 1.37681 1.34193 1.20576 0.94802 0.88708 0.92770 1.19563 0.93003 1.32354 0.94763 0.91163 1.25796 1.02168 1.01317 0.95411 1.70231 1.35005 1.51403 1.01814 0.85167 0.80132 0.77047 0.77872 1.19261 1.21917 1.21372 1.23524 0.98836 1.01070 0.94780 1.22785 0.97653 1.01261 0.95423 1.22924 0.94577 1.01821 0.96904 0.91919 0.93276 0.89585 0.84633 0.86395 0.74847 0.94739 0.94541 0.91749 0.92114 0.97230 0.96389 0.95525 0.94150 0.86666 0.89867 0.90865 0.89631 0.93694 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.63 113.37 1.20 1.52 16 2 O -0.39 -9.85 10.28 -146.99 -1.51 -11.36 16 3 C 0.10 1.99 0.39 -10.27 0.00 1.99 16 4 C -0.15 -2.66 5.15 29.85 0.15 -2.51 16 5 C 0.50 14.50 7.62 87.66 0.67 15.16 16 6 O -0.58 -22.85 14.70 -1.05 -0.02 -22.87 16 7 N -0.72 -19.53 5.56 -463.05 -2.57 -22.10 16 8 C 0.12 4.36 6.00 86.38 0.52 4.88 16 9 C 0.15 5.71 5.76 86.38 0.50 6.21 16 10 N -0.62 -31.36 2.93 -726.94 -2.13 -33.49 16 11 C 0.18 8.93 8.96 127.77 1.15 10.08 16 12 C -0.27 -14.85 9.67 84.04 0.81 -14.04 16 13 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 14 C -0.05 -2.94 5.13 84.87 0.44 -2.51 16 15 N -0.94 -55.91 10.56 21.65 0.23 -55.68 16 16 Si 0.97 45.72 29.57 68.60 2.03 47.75 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 20 C -0.14 -1.89 7.21 31.12 0.22 -1.66 16 21 C -0.13 -2.22 8.02 31.12 0.25 -1.97 16 22 C -0.12 -2.89 6.07 31.12 0.19 -2.70 16 23 H 0.06 0.75 6.84 -2.39 -0.02 0.74 16 24 H 0.05 0.72 6.52 -2.39 -0.02 0.71 16 25 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.14 1.52 7.99 -2.39 -0.02 1.50 16 27 H 0.12 1.50 6.54 -2.39 -0.02 1.48 16 28 H 0.41 7.90 8.47 -92.71 -0.79 7.11 16 29 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 31 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 32 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 33 H 0.01 0.51 7.46 -2.39 -0.02 0.49 16 34 H 0.02 0.98 7.12 -2.39 -0.02 0.96 16 35 H 0.03 1.15 8.05 -2.38 -0.02 1.13 16 36 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.12 0.94 7.99 -2.39 -0.02 0.92 16 38 H 0.08 0.93 6.81 -2.39 -0.02 0.91 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 1.37 7.98 -2.39 -0.02 1.35 16 42 H 0.09 1.98 8.10 -2.39 -0.02 1.96 16 Total: -1.00 -74.98 338.39 2.34 -72.65 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.21 Total: 10.64 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.10 Total: 14.46 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.47 Total: -111.27 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.53 Total: -34.23 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -74.98 2.34 -72.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492236218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.049 kcal (2) G-P(sol) polarization free energy of solvation -74.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds