Wall clock time and date at job start Mon Mar 30 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.46946 * 2 1 4 4 C 1.42905 * 113.99681 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46726 * 30.00527 * 4 3 2 6 6 C 1.52995 * 109.47133 * 270.00400 * 4 3 2 7 7 C 1.50703 * 109.47028 * 150.00219 * 4 3 2 8 8 O 1.21278 * 119.99985 * 5.00531 * 7 4 3 9 9 N 1.34779 * 119.99944 * 185.00243 * 7 4 3 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 4 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.64262 * 305.69360 * 11 10 9 13 13 C 1.55164 * 110.71750 * 182.55756 * 11 10 9 14 14 C 1.54908 * 101.57931 * 206.13010 * 13 11 10 15 15 N 1.47430 * 104.83134 * 37.01126 * 14 13 11 16 16 C 1.36934 * 125.64672 * 155.83112 * 15 14 13 17 17 H 1.07998 * 120.00116 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00059 * 0.02779 * 16 15 14 19 19 N 1.31614 * 120.00299 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99658 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47273 * 60.00099 * 20 18 16 22 22 H 1.48500 * 109.46807 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47180 * 299.99690 * 20 18 16 24 24 C 1.47314 * 108.73467 * 335.71446 * 15 14 13 25 25 H 1.09003 * 109.47296 * 60.00049 * 1 2 3 26 26 H 1.09006 * 109.47419 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47188 * 299.99989 * 1 2 3 28 28 H 1.09009 * 109.46834 * 240.00140 * 2 1 3 29 29 H 1.08996 * 109.46859 * 120.00720 * 2 1 3 30 30 H 1.09000 * 109.47338 * 59.99914 * 6 4 3 31 31 H 1.09006 * 109.47237 * 180.02562 * 6 4 3 32 32 H 1.09003 * 109.47419 * 299.99703 * 6 4 3 33 33 H 0.97000 * 119.99708 * 359.97438 * 9 7 4 34 34 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 35 35 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 36 36 H 1.08995 * 111.00450 * 324.20690 * 13 11 10 37 37 H 1.09003 * 111.00051 * 88.02285 * 13 11 10 38 38 H 1.09003 * 110.36036 * 155.84656 * 14 13 11 39 39 H 1.08997 * 110.36915 * 278.16767 * 14 13 11 40 40 H 0.96995 * 120.00420 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.06317 * 241.86989 * 24 15 14 42 42 H 1.08996 * 109.85306 * 120.61548 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6014 -0.5130 6 6 3.9387 1.5004 1.4432 7 6 3.8348 2.7262 -0.7098 8 8 2.9865 3.5046 -1.0911 9 7 5.1387 2.9937 -0.9213 10 6 5.5314 4.2248 -1.6114 11 6 7.0563 4.2837 -1.7213 12 1 7.5169 4.1717 -0.7398 13 6 7.5077 5.6083 -2.3914 14 6 8.8681 5.1972 -3.0078 15 7 8.6685 3.8126 -3.4732 16 6 9.3826 3.1929 -4.4638 17 1 9.1583 2.1713 -4.7328 18 6 10.3947 3.8778 -5.1221 19 7 10.6678 5.1230 -4.7947 20 14 11.3692 3.0321 -6.4729 21 1 10.4488 2.6180 -7.5622 22 1 12.3841 3.9718 -7.0136 23 1 12.0490 1.8346 -5.9173 24 6 7.5757 3.2046 -2.6946 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.6465 0.5846 1.9571 31 1 5.0253 1.5869 1.4437 32 1 3.5061 2.3590 1.9569 33 1 5.8172 2.3713 -0.6160 34 1 5.1737 5.0869 -1.0483 35 1 5.0948 4.2366 -2.6101 36 1 6.8042 5.9139 -3.1659 37 1 7.6363 6.3971 -1.6502 38 1 9.1163 5.8474 -3.8467 39 1 9.6533 5.2343 -2.2528 40 1 11.3747 5.6017 -5.2550 41 1 7.9483 2.3476 -2.1334 42 1 6.7740 2.8920 -3.3636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493179057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:59 Heat of formation + Delta-G solvation = -66.842774 kcal Electronic energy + Delta-G solvation = -20900.651758 eV Core-core repulsion = 17688.312168 eV Total energy + Delta-G solvation = -3212.339589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01314 -38.16215 -37.38953 -34.64513 -32.93442 -32.25691 -30.48889 -29.63250 -28.18711 -25.76475 -24.59978 -23.32740 -22.77031 -20.68833 -19.92943 -19.62224 -17.39095 -17.24046 -16.76818 -16.02800 -15.67589 -15.41260 -14.74429 -14.48151 -14.28569 -13.67923 -13.57683 -13.33543 -12.93119 -12.60837 -12.52015 -12.47644 -12.23052 -11.77845 -11.72685 -11.60893 -11.48839 -11.30911 -10.96696 -10.79871 -10.42648 -10.16752 -10.10114 -10.02106 -9.84678 -9.60656 -9.40836 -8.96079 -8.66012 -6.84994 -5.66437 -3.08258 2.63806 2.80565 3.39526 3.43676 3.45107 3.75030 4.47171 4.53091 4.67065 4.73467 4.83376 4.96141 5.06917 5.10266 5.20566 5.25513 5.39005 5.41289 5.46755 5.51820 5.63012 5.69161 5.80752 5.86688 5.88044 6.06855 6.11036 6.33652 6.43498 6.53343 6.58142 6.70380 6.86549 6.89549 7.50156 7.54451 7.60687 7.84616 8.25851 8.35393 9.20926 9.81714 10.46705 11.37486 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.003329 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.879668 B = 8407.702016 C = 8910.337168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.070 3.930 5 H 0.086 0.914 6 C -0.170 4.170 7 C 0.511 3.489 8 O -0.524 6.524 9 N -0.723 5.723 10 C 0.133 3.867 11 C -0.114 4.114 12 H 0.076 0.924 13 C -0.135 4.135 14 C 0.152 3.848 15 N -0.605 5.605 16 C -0.224 4.224 17 H 0.076 0.924 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.141 3.859 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.253 0.747 41 H 0.018 0.982 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 -8.346 12.363 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.009 3.991 5 H 0.104 0.896 6 C -0.227 4.227 7 C 0.296 3.704 8 O -0.399 6.399 9 N -0.376 5.376 10 C 0.010 3.990 11 C -0.134 4.134 12 H 0.094 0.906 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.352 4.352 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.015 3.985 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.193 -7.563 11.920 20.018 hybrid contribution 1.114 -1.079 -0.456 1.616 sum -13.080 -8.641 11.464 19.421 Atomic orbital electron populations 1.21728 0.93465 1.02164 1.03429 1.22593 0.95953 0.83629 1.00104 1.88056 1.18452 1.26223 1.94944 1.21894 0.83697 0.96792 0.96746 0.89606 1.22227 1.01807 1.03646 0.95055 1.20331 0.82775 0.87600 0.79718 1.90715 1.50223 1.48844 1.50097 1.46018 1.06793 1.24755 1.60054 1.21472 0.94792 0.85541 0.97170 1.22447 0.92557 0.98745 0.99616 0.90572 1.23010 1.00854 0.94528 0.99061 1.21933 0.89802 0.87141 0.98394 1.44571 1.37840 1.10716 1.39980 1.19031 1.10850 0.96226 1.09136 0.90606 1.24790 0.99231 0.96488 1.00161 1.69779 1.33605 1.09720 1.44023 0.86146 0.79536 0.78171 0.81606 1.21146 1.21544 1.21238 1.21385 0.91338 0.93651 0.92157 0.91616 0.91060 0.91790 0.93169 0.93248 0.91321 0.90772 0.91079 0.76521 0.91580 0.91188 0.91809 0.92088 0.87514 0.97021 0.93648 0.96396 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.47 6.47 37.16 0.24 0.71 16 3 O -0.36 -4.50 9.53 -55.09 -0.52 -5.02 16 4 C 0.07 0.76 3.13 -27.88 -0.09 0.67 16 5 H 0.09 0.74 7.79 -51.93 -0.40 0.33 16 6 C -0.17 -1.39 9.48 37.15 0.35 -1.04 16 7 C 0.51 7.29 7.18 -10.98 -0.08 7.21 16 8 O -0.52 -9.86 16.51 -14.30 -0.24 -10.09 16 9 N -0.72 -9.25 5.39 -60.29 -0.33 -9.57 16 10 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 11 C -0.11 -1.87 2.98 -88.78 -0.26 -2.14 16 12 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.14 -2.50 6.54 -24.58 -0.16 -2.66 16 14 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 15 N -0.60 -15.37 3.40 -169.84 -0.58 -15.95 16 16 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.14 2.82 6.67 -2.91 -0.02 2.80 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.40 8.09 -51.92 -0.42 -0.02 16 29 H 0.05 0.34 7.87 -51.93 -0.41 -0.07 16 30 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 31 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 4.14 8.19 -40.82 -0.33 3.81 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.16 8.00 -51.93 -0.42 0.75 16 36 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.50 7.73 -51.93 -0.40 0.10 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -33.49 341.94 -8.17 -41.67 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.28 Total: -0.44 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 0.08 Total: 3.57 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.34 Total: -51.81 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.76 Total: -15.12 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.49 -8.17 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493179057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.175 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds