Wall clock time and date at job start Mon Mar 30 2020 01:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.46946 * 2 1 4 4 C 1.42905 * 113.99681 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46726 * 30.00527 * 4 3 2 6 6 C 1.52995 * 109.47133 * 270.00400 * 4 3 2 7 7 C 1.50703 * 109.47028 * 150.00219 * 4 3 2 8 8 O 1.21278 * 119.99985 * 5.00531 * 7 4 3 9 9 N 1.34779 * 119.99944 * 185.00243 * 7 4 3 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 4 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.64262 * 305.69360 * 11 10 9 13 13 C 1.55164 * 110.71750 * 182.55756 * 11 10 9 14 14 C 1.54908 * 101.57931 * 206.13010 * 13 11 10 15 15 N 1.47430 * 104.83134 * 37.01126 * 14 13 11 16 16 C 1.36934 * 125.64672 * 155.83112 * 15 14 13 17 17 H 1.07998 * 120.00116 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00059 * 0.02779 * 16 15 14 19 19 N 1.31614 * 120.00299 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99658 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47273 * 60.00099 * 20 18 16 22 22 H 1.48500 * 109.46807 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47180 * 299.99690 * 20 18 16 24 24 C 1.47314 * 108.73467 * 335.71446 * 15 14 13 25 25 H 1.09003 * 109.47296 * 60.00049 * 1 2 3 26 26 H 1.09006 * 109.47419 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47188 * 299.99989 * 1 2 3 28 28 H 1.09009 * 109.46834 * 240.00140 * 2 1 3 29 29 H 1.08996 * 109.46859 * 120.00720 * 2 1 3 30 30 H 1.09000 * 109.47338 * 59.99914 * 6 4 3 31 31 H 1.09006 * 109.47237 * 180.02562 * 6 4 3 32 32 H 1.09003 * 109.47419 * 299.99703 * 6 4 3 33 33 H 0.97000 * 119.99708 * 359.97438 * 9 7 4 34 34 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 35 35 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 36 36 H 1.08995 * 111.00450 * 324.20690 * 13 11 10 37 37 H 1.09003 * 111.00051 * 88.02285 * 13 11 10 38 38 H 1.09003 * 110.36036 * 155.84656 * 14 13 11 39 39 H 1.08997 * 110.36915 * 278.16767 * 14 13 11 40 40 H 0.96995 * 120.00420 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.06317 * 241.86989 * 24 15 14 42 42 H 1.08996 * 109.85306 * 120.61548 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6014 -0.5130 6 6 3.9387 1.5004 1.4432 7 6 3.8348 2.7262 -0.7098 8 8 2.9865 3.5046 -1.0911 9 7 5.1387 2.9937 -0.9213 10 6 5.5314 4.2248 -1.6114 11 6 7.0563 4.2837 -1.7213 12 1 7.5169 4.1717 -0.7398 13 6 7.5077 5.6083 -2.3914 14 6 8.8681 5.1972 -3.0078 15 7 8.6685 3.8126 -3.4732 16 6 9.3826 3.1929 -4.4638 17 1 9.1583 2.1713 -4.7328 18 6 10.3947 3.8778 -5.1221 19 7 10.6678 5.1230 -4.7947 20 14 11.3692 3.0321 -6.4729 21 1 10.4488 2.6180 -7.5622 22 1 12.3841 3.9718 -7.0136 23 1 12.0490 1.8346 -5.9173 24 6 7.5757 3.2046 -2.6946 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.6465 0.5846 1.9571 31 1 5.0253 1.5869 1.4437 32 1 3.5061 2.3590 1.9569 33 1 5.8172 2.3713 -0.6160 34 1 5.1737 5.0869 -1.0483 35 1 5.0948 4.2366 -2.6101 36 1 6.8042 5.9139 -3.1659 37 1 7.6363 6.3971 -1.6502 38 1 9.1163 5.8474 -3.8467 39 1 9.6533 5.2343 -2.2528 40 1 11.3747 5.6017 -5.2550 41 1 7.9483 2.3476 -2.1334 42 1 6.7740 2.8920 -3.3636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493179057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:58 Heat of formation + Delta-G solvation = -89.423298 kcal Electronic energy + Delta-G solvation = -20901.630923 eV Core-core repulsion = 17688.312168 eV Total energy + Delta-G solvation = -3213.318754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08971 -39.43400 -38.61074 -36.06278 -34.42771 -33.32531 -31.68819 -30.96547 -29.72367 -27.38065 -25.89308 -24.54688 -23.53474 -22.19895 -21.41158 -20.98938 -18.91654 -18.28986 -18.06734 -17.07069 -16.88120 -16.64624 -16.36378 -15.78430 -15.58992 -15.22733 -14.52252 -14.26947 -14.21721 -13.96829 -13.53743 -13.45265 -13.31575 -13.18828 -13.11649 -12.86218 -12.81685 -12.64259 -12.28607 -12.05840 -12.04590 -11.85818 -11.82001 -11.58086 -11.36124 -10.96634 -10.72969 -10.45328 -10.12351 -8.87524 -7.76854 -5.20954 1.46700 1.49815 1.56013 1.56221 1.86153 2.50112 2.93858 3.32647 3.60392 3.68656 3.81896 3.93411 3.99378 4.04270 4.07730 4.20801 4.33967 4.45894 4.49529 4.62410 4.65606 4.70107 4.78056 4.83648 4.90163 4.91935 5.02572 5.05933 5.13548 5.21301 5.27299 5.33973 5.42275 5.48589 5.66861 5.83496 6.12886 6.32595 6.55293 7.11764 7.20817 7.79766 8.43267 9.24930 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.003329 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.879668 B = 8407.702016 C = 8910.337168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.393 6.393 4 C 0.072 3.928 5 H 0.112 0.888 6 C -0.164 4.164 7 C 0.507 3.493 8 O -0.577 6.577 9 N -0.711 5.711 10 C 0.144 3.856 11 C -0.092 4.092 12 H 0.100 0.900 13 C -0.124 4.124 14 C 0.152 3.848 15 N -0.629 5.629 16 C -0.240 4.240 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.276 1.276 24 C 0.137 3.863 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.416 0.584 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.070 0.930 39 H -0.008 1.008 40 H 0.247 0.753 41 H 0.033 0.967 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 -10.245 13.753 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.312 6.312 4 C 0.011 3.989 5 H 0.130 0.870 6 C -0.221 4.221 7 C 0.294 3.706 8 O -0.456 6.456 9 N -0.364 5.364 10 C 0.020 3.980 11 C -0.112 4.112 12 H 0.118 0.882 13 C -0.163 4.163 14 C 0.027 3.973 15 N -0.356 5.356 16 C -0.369 4.369 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.202 1.202 24 C 0.012 3.988 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.253 0.747 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.010 0.990 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -14.547 -9.508 13.342 21.909 hybrid contribution 1.193 -0.520 -0.886 1.575 sum -13.353 -10.028 12.455 20.833 Atomic orbital electron populations 1.21771 0.93181 1.03451 1.02414 1.22835 0.96322 0.82291 1.01513 1.88024 1.19438 1.28580 1.95194 1.22013 0.83436 0.95376 0.98100 0.87010 1.22222 1.02750 1.04078 0.93064 1.21078 0.82355 0.88275 0.78893 1.90690 1.51631 1.50860 1.52413 1.45869 1.07040 1.24288 1.59226 1.21199 0.93283 0.86895 0.96609 1.22284 0.93482 0.95913 0.99485 0.88157 1.22855 0.97391 0.96446 0.99584 1.21723 0.92359 0.86438 0.96749 1.44898 1.38763 1.11620 1.40291 1.19428 1.11087 0.96626 1.09774 0.90184 1.25638 1.00605 0.97247 1.02605 1.70044 1.33917 1.10959 1.45034 0.85130 0.77958 0.77196 0.78924 1.20470 1.22010 1.20242 1.21571 0.89769 0.95067 0.92412 0.93260 0.88607 0.92178 0.92508 0.90928 0.89222 0.88943 0.92588 0.74733 0.90816 0.93191 0.92158 0.89188 0.91234 0.99021 0.94347 0.94859 0.96212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.71 6.47 71.98 0.47 1.18 16 3 O -0.39 -9.34 9.53 -129.99 -1.24 -10.58 16 4 C 0.07 1.38 3.13 29.85 0.09 1.47 16 5 H 0.11 1.54 7.79 -2.39 -0.02 1.52 16 6 C -0.16 -2.18 9.48 71.98 0.68 -1.50 16 7 C 0.51 13.74 7.18 87.66 0.63 14.37 16 8 O -0.58 -21.69 16.51 15.97 0.26 -21.43 16 9 N -0.71 -16.52 5.39 -463.05 -2.50 -19.02 16 10 C 0.14 4.01 5.00 86.38 0.43 4.44 16 11 C -0.09 -2.82 2.98 -9.60 -0.03 -2.85 16 12 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.12 -4.41 6.54 31.99 0.21 -4.20 16 14 C 0.15 7.40 5.89 86.85 0.51 7.91 16 15 N -0.63 -32.02 3.40 -691.25 -2.35 -34.37 16 16 C -0.24 -13.42 10.28 84.03 0.86 -12.56 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 18 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 19 N -0.95 -56.70 10.09 21.65 0.22 -56.48 16 20 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 C 0.14 5.28 6.67 86.67 0.58 5.86 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.78 8.09 -2.38 -0.02 0.76 16 29 H 0.07 0.76 7.87 -2.39 -0.02 0.74 16 30 H 0.09 0.84 7.87 -2.39 -0.02 0.82 16 31 H 0.09 0.88 7.92 -2.38 -0.02 0.86 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.42 7.17 8.19 -92.71 -0.76 6.41 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 1.62 8.00 -2.39 -0.02 1.60 16 36 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 37 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.07 3.91 5.87 -2.39 -0.01 3.90 16 39 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.02 0.79 7.73 -2.39 -0.02 0.77 16 Total: -1.00 -74.95 341.94 2.29 -72.66 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.23 Total: 12.33 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 5.64 Total: 9.31 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.63 Total: -109.87 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.97 Total: -32.00 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.95 2.29 -72.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493179057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.765 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds