Wall clock time and date at job start Mon Mar 30 2020 01:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46957 * 2 1 4 4 C 1.42896 * 113.99877 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47405 * 330.00323 * 4 3 2 6 6 C 1.53002 * 109.47217 * 90.00036 * 4 3 2 7 7 C 1.50696 * 109.47216 * 210.00000 * 4 3 2 8 8 O 1.21284 * 120.00109 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00137 * 180.02562 * 7 4 3 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 4 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.64305 * 54.29605 * 11 10 9 13 13 C 1.55149 * 110.72213 * 177.43880 * 11 10 9 14 14 C 1.55119 * 101.49014 * 153.72986 * 13 11 10 15 15 N 1.47423 * 104.94123 * 323.22735 * 14 13 11 16 16 C 1.36942 * 125.64859 * 203.96139 * 15 14 13 17 17 H 1.07996 * 120.00129 * 180.02562 * 16 15 14 18 18 C 1.38810 * 119.99626 * 0.04303 * 16 15 14 19 19 N 1.31615 * 120.00336 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99921 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46918 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46785 * 119.99690 * 20 18 16 23 23 H 1.48492 * 109.47304 * 240.00058 * 20 18 16 24 24 C 1.47018 * 108.70436 * 23.99845 * 15 14 13 25 25 H 1.09000 * 109.47486 * 299.99750 * 1 2 3 26 26 H 1.09004 * 109.47043 * 59.99992 * 1 2 3 27 27 H 1.09002 * 109.46782 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47486 * 240.00250 * 2 1 3 29 29 H 1.09004 * 109.47185 * 119.99472 * 2 1 3 30 30 H 1.08992 * 109.47513 * 179.97438 * 6 4 3 31 31 H 1.09002 * 109.46838 * 300.00358 * 6 4 3 32 32 H 1.09004 * 109.47006 * 59.99855 * 6 4 3 33 33 H 0.96999 * 120.00047 * 359.97438 * 9 7 4 34 34 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 35 35 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 36 36 H 1.08996 * 111.00786 * 271.94246 * 13 11 10 37 37 H 1.09002 * 111.00745 * 35.78833 * 13 11 10 38 38 H 1.08994 * 110.42398 * 204.29751 * 14 13 11 39 39 H 1.09010 * 110.29686 * 82.08759 * 14 13 11 40 40 H 0.97003 * 120.00513 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.88360 * 239.52715 * 24 15 14 42 42 H 1.08997 * 110.01473 * 118.43442 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8631 0.6018 0.5146 6 6 3.9399 1.5003 -1.4417 7 6 3.8341 2.7265 0.7109 8 8 2.9853 3.4600 1.1718 9 7 5.1381 3.0441 0.8341 10 6 5.5302 4.2750 1.5253 11 6 7.0554 4.3959 1.5258 12 1 7.4469 4.3254 0.5109 13 6 7.5007 5.7229 2.1950 14 6 8.9185 5.3520 2.7034 15 7 8.8101 3.9487 3.1417 16 6 9.6207 3.3340 4.0585 17 1 9.4589 2.2970 4.3129 18 6 10.6500 4.0441 4.6611 19 7 10.8473 5.3079 4.3510 20 14 11.7554 3.2059 5.9122 21 1 11.3281 1.7939 6.0828 22 1 13.1609 3.2428 5.4342 23 1 11.6562 3.9143 7.2135 24 6 7.6883 3.3181 2.4310 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 5.0263 1.5868 -1.4413 31 1 3.6481 0.5843 -1.9555 32 1 3.5076 2.3587 -1.9559 33 1 5.8171 2.4573 0.4659 34 1 5.0975 5.1336 1.0117 35 1 5.1680 4.2458 2.5529 36 1 7.5431 6.5327 1.4667 37 1 6.8442 5.9810 3.0260 38 1 9.2014 5.9902 3.5405 39 1 9.6453 5.4422 1.8959 40 1 11.5669 5.8040 4.7718 41 1 6.9511 2.9569 3.1482 42 1 8.0505 2.4892 1.8229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493179064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:03 Heat of formation + Delta-G solvation = -67.065651 kcal Electronic energy + Delta-G solvation = -20903.397898 eV Core-core repulsion = 17691.048644 eV Total energy + Delta-G solvation = -3212.349254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01632 -38.16334 -37.39461 -34.65617 -32.95282 -32.25013 -30.49605 -29.63402 -28.16941 -25.75634 -24.61181 -23.33525 -22.78775 -20.68400 -19.92832 -19.62575 -17.40391 -17.23495 -16.77593 -16.03721 -15.66192 -15.43432 -14.75054 -14.47742 -14.28640 -13.67408 -13.57366 -13.32933 -12.92497 -12.62543 -12.52339 -12.48318 -12.22636 -11.78964 -11.73036 -11.60693 -11.49671 -11.30641 -10.96559 -10.83272 -10.42694 -10.14561 -10.08377 -10.00760 -9.85169 -9.61429 -9.41070 -8.96007 -8.66977 -6.85160 -5.67290 -3.09060 2.63023 2.81762 3.38345 3.43691 3.46306 3.74857 4.46674 4.52992 4.66220 4.73956 4.83132 4.95956 5.06783 5.10046 5.20367 5.25451 5.38813 5.41369 5.46673 5.51513 5.62885 5.69120 5.80656 5.86519 5.87935 6.06589 6.10912 6.33291 6.43416 6.53155 6.58121 6.70085 6.86556 6.89363 7.49915 7.54433 7.61364 7.84322 8.25827 8.34949 9.20396 9.81383 10.46098 11.36759 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031181 B = 0.003309 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.765827 B = 8458.774927 C = 8931.898100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.070 3.930 5 H 0.087 0.913 6 C -0.170 4.170 7 C 0.511 3.489 8 O -0.524 6.524 9 N -0.723 5.723 10 C 0.133 3.867 11 C -0.114 4.114 12 H 0.076 0.924 13 C -0.136 4.136 14 C 0.152 3.848 15 N -0.605 5.605 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.141 3.859 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.024 0.976 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.228 -8.631 -11.570 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.009 3.991 5 H 0.105 0.895 6 C -0.228 4.228 7 C 0.296 3.704 8 O -0.399 6.399 9 N -0.376 5.376 10 C 0.010 3.990 11 C -0.134 4.134 12 H 0.094 0.906 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.015 3.985 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.804 -7.895 -11.084 20.108 hybrid contribution 1.185 -1.027 0.366 1.610 sum -13.619 -8.922 -10.718 19.492 Atomic orbital electron populations 1.21727 0.93468 1.02161 1.03427 1.22593 0.95949 0.83619 1.00098 1.88052 1.18450 1.26244 1.94935 1.21893 0.83698 0.96833 0.96712 0.89510 1.22241 1.01787 1.03654 0.95122 1.20331 0.82782 0.87197 0.80114 1.90717 1.50211 1.51422 1.47566 1.46022 1.06750 1.25884 1.58953 1.21474 0.94729 0.85506 0.97270 1.22446 0.92357 0.98660 0.99895 0.90563 1.23041 1.00847 0.94475 0.99122 1.21968 0.89387 0.86852 0.99091 1.44510 1.33306 1.08397 1.46859 1.19120 1.07157 0.94878 1.13934 0.90486 1.24796 0.99167 0.96263 1.00505 1.69804 1.33323 1.07918 1.46030 0.85998 0.80296 0.78336 0.80865 1.20541 1.21754 1.21702 1.21326 0.90589 0.93558 0.93001 0.91604 0.91801 0.91064 0.93249 0.93172 0.90773 0.91327 0.91076 0.76511 0.91569 0.91195 0.92050 0.91815 0.87532 0.97013 0.93750 0.95824 0.96454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.47 6.47 37.16 0.24 0.71 16 3 O -0.36 -4.49 9.52 -55.14 -0.52 -5.01 16 4 C 0.07 0.76 3.14 -27.88 -0.09 0.67 16 5 H 0.09 0.75 7.79 -51.93 -0.40 0.34 16 6 C -0.17 -1.39 9.42 37.16 0.35 -1.04 16 7 C 0.51 7.29 7.23 -10.99 -0.08 7.21 16 8 O -0.52 -9.86 16.50 -14.36 -0.24 -10.10 16 9 N -0.72 -9.25 5.32 -60.29 -0.32 -9.57 16 10 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 11 C -0.11 -1.87 2.98 -88.79 -0.26 -2.14 16 12 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.14 -2.50 6.55 -24.47 -0.16 -2.66 16 14 C 0.15 3.64 5.89 -2.42 -0.01 3.63 16 15 N -0.60 -15.35 3.40 -169.94 -0.58 -15.92 16 16 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.82 10.09 55.49 0.56 -26.26 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 C 0.14 2.83 6.64 -3.07 -0.02 2.81 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.34 7.87 -51.93 -0.41 -0.07 16 29 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 31 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.40 4.15 7.82 -40.82 -0.32 3.83 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.16 8.00 -51.93 -0.42 0.74 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 38 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 39 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -33.49 341.13 -8.15 -41.64 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.24 Total: -0.50 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.08 Total: 3.61 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.34 Total: -51.75 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.76 Total: -15.11 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.49 -8.15 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493179064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.425 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds