Wall clock time and date at job start Mon Mar 30 2020 01:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46957 * 2 1 4 4 C 1.42896 * 113.99877 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47405 * 330.00323 * 4 3 2 6 6 C 1.53002 * 109.47217 * 90.00036 * 4 3 2 7 7 C 1.50696 * 109.47216 * 210.00000 * 4 3 2 8 8 O 1.21284 * 120.00109 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00137 * 180.02562 * 7 4 3 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 4 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.64305 * 54.29605 * 11 10 9 13 13 C 1.55149 * 110.72213 * 177.43880 * 11 10 9 14 14 C 1.55119 * 101.49014 * 153.72986 * 13 11 10 15 15 N 1.47423 * 104.94123 * 323.22735 * 14 13 11 16 16 C 1.36942 * 125.64859 * 203.96139 * 15 14 13 17 17 H 1.07996 * 120.00129 * 180.02562 * 16 15 14 18 18 C 1.38810 * 119.99626 * 0.04303 * 16 15 14 19 19 N 1.31615 * 120.00336 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99921 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46918 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46785 * 119.99690 * 20 18 16 23 23 H 1.48492 * 109.47304 * 240.00058 * 20 18 16 24 24 C 1.47018 * 108.70436 * 23.99845 * 15 14 13 25 25 H 1.09000 * 109.47486 * 299.99750 * 1 2 3 26 26 H 1.09004 * 109.47043 * 59.99992 * 1 2 3 27 27 H 1.09002 * 109.46782 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47486 * 240.00250 * 2 1 3 29 29 H 1.09004 * 109.47185 * 119.99472 * 2 1 3 30 30 H 1.08992 * 109.47513 * 179.97438 * 6 4 3 31 31 H 1.09002 * 109.46838 * 300.00358 * 6 4 3 32 32 H 1.09004 * 109.47006 * 59.99855 * 6 4 3 33 33 H 0.96999 * 120.00047 * 359.97438 * 9 7 4 34 34 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 35 35 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 36 36 H 1.08996 * 111.00786 * 271.94246 * 13 11 10 37 37 H 1.09002 * 111.00745 * 35.78833 * 13 11 10 38 38 H 1.08994 * 110.42398 * 204.29751 * 14 13 11 39 39 H 1.09010 * 110.29686 * 82.08759 * 14 13 11 40 40 H 0.97003 * 120.00513 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.88360 * 239.52715 * 24 15 14 42 42 H 1.08997 * 110.01473 * 118.43442 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8631 0.6018 0.5146 6 6 3.9399 1.5003 -1.4417 7 6 3.8341 2.7265 0.7109 8 8 2.9853 3.4600 1.1718 9 7 5.1381 3.0441 0.8341 10 6 5.5302 4.2750 1.5253 11 6 7.0554 4.3959 1.5258 12 1 7.4469 4.3254 0.5109 13 6 7.5007 5.7229 2.1950 14 6 8.9185 5.3520 2.7034 15 7 8.8101 3.9487 3.1417 16 6 9.6207 3.3340 4.0585 17 1 9.4589 2.2970 4.3129 18 6 10.6500 4.0441 4.6611 19 7 10.8473 5.3079 4.3510 20 14 11.7554 3.2059 5.9122 21 1 11.3281 1.7939 6.0828 22 1 13.1609 3.2428 5.4342 23 1 11.6562 3.9143 7.2135 24 6 7.6883 3.3181 2.4310 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 5.0263 1.5868 -1.4413 31 1 3.6481 0.5843 -1.9555 32 1 3.5076 2.3587 -1.9559 33 1 5.8171 2.4573 0.4659 34 1 5.0975 5.1336 1.0117 35 1 5.1680 4.2458 2.5529 36 1 7.5431 6.5327 1.4667 37 1 6.8442 5.9810 3.0260 38 1 9.2014 5.9902 3.5405 39 1 9.6453 5.4422 1.8959 40 1 11.5669 5.8040 4.7718 41 1 6.9511 2.9569 3.1482 42 1 8.0505 2.4892 1.8229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493179064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:02 Heat of formation + Delta-G solvation = -89.581754 kcal Electronic energy + Delta-G solvation = -20904.374269 eV Core-core repulsion = 17691.048644 eV Total energy + Delta-G solvation = -3213.325626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09243 -39.43960 -38.61062 -36.07081 -34.44095 -33.32400 -31.70062 -30.96139 -29.70216 -27.37866 -25.89127 -24.56535 -23.54278 -22.20372 -21.40240 -20.99039 -18.92282 -18.30258 -18.05790 -17.06846 -16.90893 -16.64987 -16.36425 -15.77324 -15.58527 -15.22584 -14.51743 -14.27217 -14.21596 -13.96793 -13.55224 -13.45225 -13.31913 -13.18878 -13.12817 -12.85618 -12.80600 -12.69958 -12.28280 -12.05012 -11.97742 -11.85922 -11.82286 -11.57877 -11.36642 -10.96648 -10.74826 -10.45288 -10.12271 -8.87562 -7.77521 -5.21573 1.46788 1.47697 1.55849 1.57878 1.86669 2.49582 2.93795 3.32400 3.60532 3.68747 3.81726 3.93284 3.99351 4.04429 4.07038 4.20796 4.33985 4.45821 4.49516 4.62316 4.65614 4.69895 4.78264 4.83650 4.90369 4.91931 5.02648 5.05839 5.13629 5.21693 5.27360 5.33920 5.42422 5.48891 5.66601 5.83499 6.13088 6.32440 6.55057 7.11568 7.20720 7.79609 8.42883 9.24677 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031181 B = 0.003309 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.765827 B = 8458.774927 C = 8931.898100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.393 6.393 4 C 0.072 3.928 5 H 0.112 0.888 6 C -0.164 4.164 7 C 0.507 3.493 8 O -0.577 6.577 9 N -0.710 5.710 10 C 0.144 3.856 11 C -0.093 4.093 12 H 0.100 0.900 13 C -0.124 4.124 14 C 0.152 3.848 15 N -0.629 5.629 16 C -0.237 4.237 17 H 0.081 0.919 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.979 3.021 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.137 3.863 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.415 0.585 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.069 0.931 39 H -0.008 1.008 40 H 0.247 0.753 41 H 0.019 0.981 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -10.529 -12.958 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.011 3.989 5 H 0.130 0.870 6 C -0.222 4.222 7 C 0.294 3.706 8 O -0.456 6.456 9 N -0.364 5.364 10 C 0.020 3.980 11 C -0.112 4.112 12 H 0.118 0.882 13 C -0.163 4.163 14 C 0.027 3.973 15 N -0.355 5.355 16 C -0.366 4.366 17 H 0.099 0.901 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.190 1.190 22 H -0.219 1.219 23 H -0.220 1.220 24 C 0.012 3.988 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.010 0.990 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.222 -9.837 -12.505 22.019 hybrid contribution 1.286 -0.467 0.796 1.583 sum -13.936 -10.304 -11.709 20.916 Atomic orbital electron populations 1.21770 0.93165 1.03451 1.02421 1.22835 0.96332 0.82286 1.01491 1.88019 1.19417 1.28589 1.95184 1.22010 0.83447 0.95375 0.98096 0.87018 1.22236 1.02725 1.04125 0.93092 1.21078 0.82364 0.87880 0.79285 1.90692 1.51614 1.53401 1.49910 1.45874 1.06987 1.25357 1.58195 1.21203 0.93308 0.86838 0.96648 1.22284 0.93058 0.95841 0.99982 0.88172 1.22887 0.97048 0.96513 0.99837 1.21759 0.92273 0.86139 0.97129 1.44834 1.34232 1.09337 1.47114 1.19493 1.07526 0.95244 1.14348 0.90138 1.25639 1.00878 0.96995 1.02655 1.70061 1.33679 1.09148 1.47090 0.84989 0.78128 0.77962 0.78132 1.19042 1.21857 1.22003 1.21513 0.89106 0.94886 0.93272 0.93251 0.92166 0.88614 0.90927 0.92549 0.88949 0.89258 0.92478 0.74743 0.90828 0.93156 0.89158 0.92139 0.91254 0.99035 0.94364 0.96271 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.05 0.71 6.47 71.98 0.47 1.18 16 3 O -0.39 -9.31 9.52 -129.94 -1.24 -10.54 16 4 C 0.07 1.38 3.14 29.85 0.09 1.47 16 5 H 0.11 1.56 7.79 -2.39 -0.02 1.54 16 6 C -0.16 -2.16 9.42 71.98 0.68 -1.48 16 7 C 0.51 13.74 7.23 87.66 0.63 14.37 16 8 O -0.58 -21.67 16.50 16.00 0.26 -21.41 16 9 N -0.71 -16.53 5.32 -463.04 -2.46 -19.00 16 10 C 0.14 4.00 5.00 86.38 0.43 4.44 16 11 C -0.09 -2.82 2.98 -9.61 -0.03 -2.85 16 12 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.12 -4.41 6.55 32.06 0.21 -4.20 16 14 C 0.15 7.38 5.89 86.93 0.51 7.89 16 15 N -0.63 -31.94 3.40 -691.58 -2.35 -34.29 16 16 C -0.24 -13.22 10.27 84.03 0.86 -12.36 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 19 N -0.95 -56.68 10.09 21.65 0.22 -56.46 16 20 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 C 0.14 5.29 6.64 86.73 0.58 5.87 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.76 7.87 -2.39 -0.02 0.74 16 29 H 0.06 0.78 8.08 -2.38 -0.02 0.76 16 30 H 0.09 0.86 7.56 -2.39 -0.02 0.85 16 31 H 0.09 0.83 7.87 -2.39 -0.02 0.81 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.42 7.20 7.82 -92.71 -0.72 6.48 16 34 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.05 1.63 8.00 -2.39 -0.02 1.61 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 38 H 0.07 3.90 5.87 -2.39 -0.01 3.89 16 39 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.02 0.76 7.73 -2.39 -0.02 0.75 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -74.89 341.13 2.36 -72.52 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.26 Total: 12.11 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.64 Total: 9.49 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -4.59 Total: -109.75 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.97 Total: -31.96 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.89 2.36 -72.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493179064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.060 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds