Wall clock time and date at job start Mon Mar 30 2020 01:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46872 * 2 1 4 4 C 1.42901 * 113.99909 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47212 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99625 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00109 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99934 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47190 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47503 * 180.02562 * 9 8 7 11 11 H 1.09009 * 110.63830 * 303.31399 * 10 9 8 12 12 C 1.55153 * 110.87552 * 180.02562 * 10 9 8 13 13 C 1.55129 * 101.48424 * 205.89691 * 12 10 9 14 14 N 1.47418 * 104.72416 * 37.29543 * 13 12 10 15 15 C 1.36943 * 125.64844 * 155.81202 * 14 13 12 16 16 H 1.07999 * 119.99806 * 189.59350 * 15 14 13 17 17 C 1.38813 * 119.99714 * 9.87031 * 15 14 13 18 18 N 1.31614 * 120.00178 * 9.33601 * 17 15 14 19 19 Si 1.86799 * 119.99836 * 189.33476 * 17 15 14 20 20 H 1.48500 * 109.47124 * 94.11057 * 19 17 15 21 21 H 1.48497 * 109.47029 * 214.11167 * 19 17 15 22 22 H 1.48500 * 109.47132 * 334.11387 * 19 17 15 23 23 C 1.47022 * 108.70410 * 335.55349 * 14 13 12 24 24 H 1.08996 * 109.46859 * 60.00171 * 1 2 3 25 25 H 1.09006 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47082 * 299.99819 * 1 2 3 27 27 H 1.09001 * 109.47535 * 240.00454 * 2 1 3 28 28 H 1.09004 * 109.47469 * 119.99794 * 2 1 3 29 29 H 1.08996 * 109.47178 * 60.00273 * 4 3 2 30 30 H 1.09000 * 109.47348 * 300.00134 * 4 3 2 31 31 H 0.96995 * 120.00265 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.46860 * 60.00200 * 8 7 5 33 33 H 1.09000 * 109.47214 * 300.00337 * 8 7 5 34 34 H 1.09000 * 109.47051 * 59.99476 * 9 8 7 35 35 H 1.09000 * 109.47083 * 300.00130 * 9 8 7 36 36 H 1.08994 * 111.00165 * 324.13699 * 12 10 9 37 37 H 1.09003 * 110.99954 * 87.95300 * 12 10 9 38 38 H 1.09005 * 110.49825 * 278.44970 * 13 12 10 39 39 H 1.09001 * 110.33876 * 156.06316 * 13 12 10 40 40 H 0.97002 * 120.00219 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.88219 * 120.70403 * 23 14 13 42 42 H 1.08997 * 109.87921 * 241.86846 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9163 0.0012 6 8 2.9609 3.7729 0.0006 7 7 5.1208 3.2664 0.0023 8 6 5.4985 4.6820 0.0023 9 6 7.0237 4.8028 0.0030 10 6 7.4182 6.2811 0.0037 11 1 6.9764 6.7970 -0.8489 12 6 8.9615 6.4414 0.0038 13 6 9.1273 7.8333 0.6684 14 7 8.0798 7.8810 1.7045 15 6 8.1052 8.6610 2.8298 16 1 7.3681 8.5140 3.6054 17 6 9.0747 9.6443 2.9709 18 7 9.8519 9.9529 1.9545 19 14 9.2764 10.5296 4.6034 20 1 10.3251 9.8523 5.4075 21 1 9.6749 11.9387 4.3564 22 1 7.9895 10.5016 5.3440 23 6 7.0003 6.9571 1.3265 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8340 0.9766 -0.8891 30 1 3.8333 0.9768 0.8908 31 1 5.8074 2.5813 0.0024 32 1 5.0949 5.1656 0.8918 33 1 5.0965 5.1653 -0.8882 34 1 7.4270 4.3191 -0.8866 35 1 7.4261 4.3194 0.8933 36 1 9.4352 5.6613 0.5996 37 1 9.3538 6.4461 -1.0132 38 1 8.9735 8.6264 -0.0634 39 1 10.1143 7.9212 1.1224 40 1 10.5291 10.6403 2.0530 41 1 6.8689 6.2033 2.1027 42 1 6.0722 7.5103 1.1831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493985394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:24 Heat of formation + Delta-G solvation = -70.947447 kcal Electronic energy + Delta-G solvation = -20331.171815 eV Core-core repulsion = 17118.654234 eV Total energy + Delta-G solvation = -3212.517581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88985 -38.11297 -37.62349 -35.18117 -33.04070 -31.90534 -30.91929 -29.13170 -28.00994 -26.17588 -24.53320 -23.14244 -22.29580 -20.84814 -20.12210 -19.30095 -17.31626 -17.16652 -16.77994 -16.75832 -15.66567 -15.54606 -14.93742 -14.63352 -14.35952 -13.96700 -13.67137 -13.12306 -13.09510 -12.75658 -12.51747 -12.27378 -11.97284 -11.74374 -11.64324 -11.61569 -11.56530 -11.14381 -10.81942 -10.72102 -10.15188 -10.10443 -10.05063 -9.93586 -9.80622 -9.72376 -9.58415 -9.12282 -8.54521 -6.75194 -5.70879 -3.03000 2.50823 2.63011 3.42239 3.47618 3.49786 3.72728 4.51893 4.53487 4.65373 4.74163 4.87102 4.88350 4.94963 4.97763 5.10780 5.28716 5.31043 5.49934 5.55128 5.61438 5.63553 5.77699 5.78943 5.89994 6.01728 6.17477 6.22484 6.37083 6.39114 6.59955 6.64390 6.71672 6.79437 7.00895 7.37713 7.55088 7.62841 7.82276 8.12342 8.31052 9.24154 9.86118 10.54291 11.42323 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035195 B = 0.002778 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.384032 B =10075.008154 C =10638.876838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.045 3.955 5 C 0.509 3.491 6 O -0.518 6.518 7 N -0.728 5.728 8 C 0.118 3.882 9 C -0.115 4.115 10 C -0.097 4.097 11 H 0.073 0.927 12 C -0.140 4.140 13 C 0.172 3.828 14 N -0.605 5.605 15 C -0.227 4.227 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.920 5.920 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.139 3.861 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.399 0.601 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.252 0.748 41 H 0.023 0.977 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 -21.682 -6.603 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.035 4.035 5 C 0.294 3.706 6 O -0.393 6.393 7 N -0.382 5.382 8 C -0.005 4.005 9 C -0.153 4.153 10 C -0.117 4.117 11 H 0.092 0.908 12 C -0.179 4.179 13 C 0.047 3.953 14 N -0.331 5.331 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.013 3.987 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.233 0.767 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.053 -20.696 -6.511 23.912 hybrid contribution 0.699 -0.050 0.808 1.069 sum -9.354 -20.746 -5.704 23.461 Atomic orbital electron populations 1.21735 0.93367 1.02230 1.03565 1.22554 0.96054 0.83360 1.00155 1.88041 1.18493 1.26341 1.95416 1.22191 0.84037 0.94788 1.02496 1.20229 0.82840 0.90501 0.77070 1.90755 1.49322 1.51749 1.47451 1.45959 1.06731 1.09444 1.76073 1.21523 0.95755 0.80218 1.02961 1.21776 0.93337 0.97957 1.02278 1.22079 0.97333 0.93228 0.99023 0.90842 1.23069 0.93911 1.01001 0.99876 1.21441 0.94089 0.89829 0.89916 1.44519 1.17449 1.47479 1.23639 1.19060 1.12535 1.10112 0.93866 0.90648 1.24825 0.99742 0.98221 0.97789 1.69960 1.24070 1.33926 1.28746 0.86114 0.77839 0.78794 0.83120 1.21654 1.21778 1.20592 1.21376 0.92096 0.92475 0.92780 0.91663 0.90970 0.91609 0.93210 0.93160 0.90353 0.90282 0.76698 0.90779 0.91380 0.91621 0.91179 0.92213 0.92360 0.95661 0.91383 0.93772 0.95950 0.96163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.41 6.66 37.16 0.25 0.66 16 3 O -0.36 -4.18 9.88 -55.14 -0.54 -4.72 16 4 C 0.05 0.40 6.42 36.01 0.23 0.63 16 5 C 0.51 6.43 7.91 -10.99 -0.09 6.35 16 6 O -0.52 -9.30 16.50 -14.35 -0.24 -9.54 16 7 N -0.73 -7.59 5.56 -60.29 -0.33 -7.92 16 8 C 0.12 1.52 5.52 -4.04 -0.02 1.49 16 9 C -0.12 -1.43 4.73 -26.73 -0.13 -1.55 16 10 C -0.10 -1.62 2.97 -88.79 -0.26 -1.88 16 11 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 12 C -0.14 -2.54 6.55 -24.47 -0.16 -2.70 16 13 C 0.17 4.20 5.43 -2.41 -0.01 4.18 16 14 N -0.60 -15.82 3.39 -169.94 -0.58 -16.39 16 15 C -0.23 -6.51 10.24 -15.06 -0.15 -6.66 16 16 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 17 C -0.01 -0.27 5.40 -17.43 -0.09 -0.36 16 18 N -0.92 -27.46 10.67 55.49 0.59 -26.86 16 19 Si 0.91 22.47 29.56 -169.99 -5.03 17.44 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.14 2.93 5.98 -3.06 -0.02 2.91 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 32 H 0.07 1.11 7.49 -51.93 -0.39 0.72 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 36 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.07 1.84 6.92 -51.93 -0.36 1.48 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 41 H 0.02 0.47 7.76 -51.93 -0.40 0.06 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -35.32 343.66 -8.40 -43.72 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -7.37 Total: -3.32 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.08 Total: 2.41 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.32 Total: -51.18 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.78 Total: -14.25 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.32 -8.40 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493985394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.227 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds