Wall clock time and date at job start Mon Mar 30 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47231 * 2 1 4 4 C 1.42901 * 113.99717 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46994 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00262 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99767 * 179.72194 * 5 4 3 8 8 C 1.46504 * 119.99503 * 180.27489 * 7 5 4 9 9 C 1.53006 * 109.46674 * 180.02562 * 8 7 5 10 10 C 1.52994 * 109.46958 * 179.97438 * 9 8 7 11 11 H 1.09000 * 110.88335 * 54.30278 * 10 9 8 12 12 C 1.55159 * 111.00592 * 178.17869 * 10 9 8 13 13 C 1.54326 * 102.94257 * 153.57665 * 12 10 9 14 14 N 1.47024 * 107.27032 * 337.81109 * 13 12 10 15 15 C 1.36935 * 125.64518 * 178.97036 * 14 13 12 16 16 H 1.08007 * 120.00140 * 174.79023 * 15 14 13 17 17 C 1.38819 * 120.00137 * 354.79311 * 15 14 13 18 18 N 1.31619 * 119.99836 * 7.05300 * 17 15 14 19 19 Si 1.86799 * 120.00030 * 187.05040 * 17 15 14 20 20 H 1.48505 * 109.46954 * 94.98775 * 19 17 15 21 21 H 1.48491 * 109.47286 * 214.98966 * 19 17 15 22 22 H 1.48504 * 109.47209 * 334.99046 * 19 17 15 23 23 C 1.47465 * 108.72530 * 358.97548 * 14 13 12 24 24 H 1.08996 * 109.46997 * 300.00228 * 1 2 3 25 25 H 1.09005 * 109.47006 * 59.99808 * 1 2 3 26 26 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46835 * 240.00058 * 2 1 3 28 28 H 1.08996 * 109.47147 * 120.00462 * 2 1 3 29 29 H 1.09000 * 109.47395 * 59.99890 * 4 3 2 30 30 H 1.09004 * 109.47325 * 300.00151 * 4 3 2 31 31 H 0.96994 * 120.00115 * 0.28293 * 7 5 4 32 32 H 1.08997 * 109.47326 * 299.99790 * 8 7 5 33 33 H 1.09000 * 109.46909 * 60.00606 * 8 7 5 34 34 H 1.08994 * 109.47438 * 300.00561 * 9 8 7 35 35 H 1.09000 * 109.46571 * 60.00288 * 9 8 7 36 36 H 1.08997 * 110.71936 * 271.94562 * 12 10 9 37 37 H 1.09005 * 110.71314 * 35.04123 * 12 10 9 38 38 H 1.09000 * 109.87701 * 97.22804 * 13 12 10 39 39 H 1.08997 * 109.88174 * 218.23882 * 13 12 10 40 40 H 0.96994 * 119.99382 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.34526 * 265.25613 * 23 14 13 42 42 H 1.08998 * 110.40771 * 142.91474 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9160 -0.0012 6 8 2.9612 3.7728 -0.0016 7 7 5.1211 3.2660 0.0039 8 6 5.4989 4.6815 0.0094 9 6 7.0242 4.8022 0.0138 10 6 7.4187 6.2804 0.0189 11 1 6.9426 6.8068 0.8462 12 6 8.9608 6.4443 0.0695 13 6 9.1847 7.8165 -0.6002 14 7 8.0064 8.0922 -1.4352 15 6 7.8042 9.2220 -2.1820 16 1 6.9428 9.2944 -2.8295 17 6 8.7066 10.2743 -2.1071 18 7 9.8257 10.1344 -1.4287 19 14 8.3325 11.8886 -2.9693 20 1 7.7002 12.8280 -2.0085 21 1 9.5943 12.4799 -3.4821 22 1 7.4052 11.6413 -4.1026 23 6 7.0780 6.9509 -1.3354 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8333 0.9765 -0.8908 30 1 3.8341 0.9762 0.8892 31 1 5.8076 2.5808 0.0038 32 1 5.0989 5.1678 -0.8803 33 1 5.0935 5.1623 0.8997 34 1 7.4246 4.3158 0.9032 35 1 7.4291 4.3215 -0.8767 36 1 9.3137 6.4562 1.1007 37 1 9.4515 5.6517 -0.4955 38 1 9.2876 8.5887 0.1623 39 1 10.0813 7.7851 -1.2191 40 1 10.4563 10.8696 -1.3767 41 1 7.2450 6.2536 -2.1564 42 1 6.0453 7.2997 -1.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493985395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:26 Heat of formation + Delta-G solvation = -70.054705 kcal Electronic energy + Delta-G solvation = -20311.424197 eV Core-core repulsion = 17098.945328 eV Total energy + Delta-G solvation = -3212.478869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89151 -38.10082 -37.61326 -35.19163 -33.03282 -31.90898 -30.91364 -29.13662 -28.02030 -26.17242 -24.52692 -23.14714 -22.29783 -20.85241 -19.97472 -19.43979 -17.32550 -17.18638 -16.78713 -16.76550 -15.57867 -15.54871 -14.92006 -14.57975 -14.34405 -14.05687 -13.63806 -13.19420 -13.10161 -12.76081 -12.45333 -12.24303 -11.93892 -11.83321 -11.73959 -11.61709 -11.50432 -11.06496 -10.84797 -10.74780 -10.10697 -10.06999 -10.05529 -9.93534 -9.79820 -9.69982 -9.59390 -9.12554 -8.53263 -6.77545 -5.68231 -2.99884 2.50408 2.62531 3.43590 3.48953 3.50657 3.72270 4.51467 4.54528 4.64949 4.73608 4.86570 4.87789 4.93710 4.97361 5.11206 5.28474 5.31061 5.51400 5.54757 5.63645 5.67110 5.77699 5.78683 5.89792 6.03601 6.13135 6.22622 6.36405 6.41343 6.57920 6.62919 6.71181 6.76989 7.00506 7.37246 7.60415 7.68299 7.87093 8.11945 8.30994 9.26943 9.87637 10.54491 11.44088 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036410 B = 0.002761 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.832289 B =10140.023489 C =10773.300992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.045 3.955 5 C 0.509 3.491 6 O -0.518 6.518 7 N -0.729 5.729 8 C 0.119 3.881 9 C -0.115 4.115 10 C -0.101 4.101 11 H 0.076 0.924 12 C -0.138 4.138 13 C 0.176 3.824 14 N -0.607 5.607 15 C -0.227 4.227 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.921 5.921 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.139 3.861 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.399 0.601 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.251 0.749 41 H 0.017 0.983 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 -22.524 5.073 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.035 4.035 5 C 0.293 3.707 6 O -0.392 6.392 7 N -0.382 5.382 8 C -0.004 4.004 9 C -0.154 4.154 10 C -0.121 4.121 11 H 0.094 0.906 12 C -0.176 4.176 13 C 0.051 3.949 14 N -0.333 5.333 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.013 3.987 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.233 0.767 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.069 -21.511 5.020 24.275 hybrid contribution 0.503 0.275 -0.443 0.724 sum -9.566 -21.236 4.577 23.736 Atomic orbital electron populations 1.21735 0.93365 1.02231 1.03571 1.22551 0.96057 0.83360 1.00151 1.88040 1.18492 1.26342 1.95414 1.22193 0.84038 0.94790 1.02489 1.20233 0.82847 0.90498 0.77079 1.90757 1.49335 1.51730 1.47419 1.45965 1.06723 1.09451 1.76094 1.21516 0.95732 0.80182 1.02972 1.21743 0.93351 0.98058 1.02216 1.22271 0.97094 0.92993 0.99710 0.90557 1.22895 0.94301 1.00344 1.00090 1.21134 0.90023 0.90258 0.93455 1.44504 1.17846 1.16913 1.54086 1.19086 1.07350 0.91170 1.17945 0.90453 1.24826 0.96830 0.98348 1.00548 1.69985 1.09639 1.31190 1.46093 0.86120 0.77067 0.83972 0.78783 1.21626 1.21824 1.20631 1.21629 0.94065 0.89911 0.93089 0.91651 0.91619 0.90969 0.93169 0.93208 0.90298 0.90347 0.76711 0.90829 0.91334 0.91638 0.91282 0.92366 0.92600 0.93568 0.94299 0.93836 0.96553 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.36 -4.14 9.88 -55.14 -0.54 -4.69 16 4 C 0.05 0.39 6.42 36.01 0.23 0.62 16 5 C 0.51 6.37 7.91 -10.98 -0.09 6.28 16 6 O -0.52 -9.25 16.50 -14.35 -0.24 -9.49 16 7 N -0.73 -7.47 5.56 -60.29 -0.33 -7.80 16 8 C 0.12 1.51 5.55 -4.04 -0.02 1.48 16 9 C -0.12 -1.41 4.84 -26.73 -0.13 -1.54 16 10 C -0.10 -1.68 3.04 -88.47 -0.27 -1.95 16 11 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 12 C -0.14 -2.51 6.42 -24.89 -0.16 -2.67 16 13 C 0.18 4.32 5.38 -3.06 -0.02 4.31 16 14 N -0.61 -15.89 3.40 -170.03 -0.58 -16.46 16 15 C -0.23 -6.51 10.26 -15.06 -0.15 -6.67 16 16 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 17 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 18 N -0.92 -27.60 10.36 55.49 0.57 -27.02 16 19 Si 0.91 22.60 29.56 -169.99 -5.02 17.57 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.14 2.90 6.04 -2.51 -0.02 2.88 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.40 2.65 8.47 -40.82 -0.35 2.30 16 32 H 0.07 1.08 7.59 -51.93 -0.39 0.69 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 38 H 0.05 1.26 7.30 -51.93 -0.38 0.88 16 39 H 0.04 1.05 7.61 -51.93 -0.40 0.66 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 42 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -35.43 343.65 -8.43 -43.86 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -7.38 Total: -3.56 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.09 Total: 2.40 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.34 Total: -51.29 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.78 Total: -14.17 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.43 -8.43 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493985395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.190 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds