Wall clock time and date at job start Mon Mar 30 2020 01:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47231 * 2 1 4 4 C 1.42901 * 113.99717 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46994 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00262 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99767 * 179.72194 * 5 4 3 8 8 C 1.46504 * 119.99503 * 180.27489 * 7 5 4 9 9 C 1.53006 * 109.46674 * 180.02562 * 8 7 5 10 10 C 1.52994 * 109.46958 * 179.97438 * 9 8 7 11 11 H 1.09000 * 110.88335 * 54.30278 * 10 9 8 12 12 C 1.55159 * 111.00592 * 178.17869 * 10 9 8 13 13 C 1.54326 * 102.94257 * 153.57665 * 12 10 9 14 14 N 1.47024 * 107.27032 * 337.81109 * 13 12 10 15 15 C 1.36935 * 125.64518 * 178.97036 * 14 13 12 16 16 H 1.08007 * 120.00140 * 174.79023 * 15 14 13 17 17 C 1.38819 * 120.00137 * 354.79311 * 15 14 13 18 18 N 1.31619 * 119.99836 * 7.05300 * 17 15 14 19 19 Si 1.86799 * 120.00030 * 187.05040 * 17 15 14 20 20 H 1.48505 * 109.46954 * 94.98775 * 19 17 15 21 21 H 1.48491 * 109.47286 * 214.98966 * 19 17 15 22 22 H 1.48504 * 109.47209 * 334.99046 * 19 17 15 23 23 C 1.47465 * 108.72530 * 358.97548 * 14 13 12 24 24 H 1.08996 * 109.46997 * 300.00228 * 1 2 3 25 25 H 1.09005 * 109.47006 * 59.99808 * 1 2 3 26 26 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46835 * 240.00058 * 2 1 3 28 28 H 1.08996 * 109.47147 * 120.00462 * 2 1 3 29 29 H 1.09000 * 109.47395 * 59.99890 * 4 3 2 30 30 H 1.09004 * 109.47325 * 300.00151 * 4 3 2 31 31 H 0.96994 * 120.00115 * 0.28293 * 7 5 4 32 32 H 1.08997 * 109.47326 * 299.99790 * 8 7 5 33 33 H 1.09000 * 109.46909 * 60.00606 * 8 7 5 34 34 H 1.08994 * 109.47438 * 300.00561 * 9 8 7 35 35 H 1.09000 * 109.46571 * 60.00288 * 9 8 7 36 36 H 1.08997 * 110.71936 * 271.94562 * 12 10 9 37 37 H 1.09005 * 110.71314 * 35.04123 * 12 10 9 38 38 H 1.09000 * 109.87701 * 97.22804 * 13 12 10 39 39 H 1.08997 * 109.88174 * 218.23882 * 13 12 10 40 40 H 0.96994 * 119.99382 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.34526 * 265.25613 * 23 14 13 42 42 H 1.08998 * 110.40771 * 142.91474 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9160 -0.0012 6 8 2.9612 3.7728 -0.0016 7 7 5.1211 3.2660 0.0039 8 6 5.4989 4.6815 0.0094 9 6 7.0242 4.8022 0.0138 10 6 7.4187 6.2804 0.0189 11 1 6.9426 6.8068 0.8462 12 6 8.9608 6.4443 0.0695 13 6 9.1847 7.8165 -0.6002 14 7 8.0064 8.0922 -1.4352 15 6 7.8042 9.2220 -2.1820 16 1 6.9428 9.2944 -2.8295 17 6 8.7066 10.2743 -2.1071 18 7 9.8257 10.1344 -1.4287 19 14 8.3325 11.8886 -2.9693 20 1 7.7002 12.8280 -2.0085 21 1 9.5943 12.4799 -3.4821 22 1 7.4052 11.6413 -4.1026 23 6 7.0780 6.9509 -1.3354 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8333 0.9765 -0.8908 30 1 3.8341 0.9762 0.8892 31 1 5.8076 2.5808 0.0038 32 1 5.0989 5.1678 -0.8803 33 1 5.0935 5.1623 0.8997 34 1 7.4246 4.3158 0.9032 35 1 7.4291 4.3215 -0.8767 36 1 9.3137 6.4562 1.1007 37 1 9.4515 5.6517 -0.4955 38 1 9.2876 8.5887 0.1623 39 1 10.0813 7.7851 -1.2191 40 1 10.4563 10.8696 -1.3767 41 1 7.2450 6.2536 -2.1564 42 1 6.0453 7.2997 -1.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493985395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:25 Heat of formation + Delta-G solvation = -95.207123 kcal Electronic energy + Delta-G solvation = -20312.514888 eV Core-core repulsion = 17098.945328 eV Total energy + Delta-G solvation = -3213.569560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83678 -39.43751 -38.59296 -36.42815 -34.75667 -32.76977 -32.23895 -30.80116 -29.12038 -27.61887 -26.28557 -23.70719 -23.54958 -21.94052 -21.74832 -20.80317 -18.86741 -18.16711 -17.88324 -17.43841 -16.89513 -16.58117 -16.45782 -16.07224 -15.57069 -15.19205 -15.10790 -14.25274 -13.97006 -13.87381 -13.81150 -13.62179 -13.33627 -13.20827 -13.06491 -12.80432 -12.66109 -12.31295 -12.21065 -12.15928 -12.00340 -11.82989 -11.55104 -11.38007 -11.32148 -10.83665 -10.69365 -10.64246 -10.10344 -8.88930 -7.87647 -5.21367 1.43318 1.45770 1.54542 1.58555 1.85636 2.48332 3.06319 3.30101 3.67229 3.76189 3.83382 3.99518 4.16555 4.18349 4.21154 4.32479 4.35029 4.37410 4.40567 4.52736 4.62822 4.70463 4.77431 4.84314 4.91753 5.01488 5.04298 5.13782 5.18069 5.27068 5.27881 5.43269 5.44196 5.54185 5.70652 5.79591 6.13939 6.20537 6.60267 7.10389 7.26994 7.78490 8.42982 9.23236 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036410 B = 0.002761 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.832289 B =10140.023489 C =10773.300992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.407 6.407 4 C 0.049 3.951 5 C 0.502 3.498 6 O -0.583 6.583 7 N -0.710 5.710 8 C 0.123 3.877 9 C -0.097 4.097 10 C -0.086 4.086 11 H 0.070 0.930 12 C -0.121 4.121 13 C 0.179 3.821 14 N -0.632 5.632 15 C -0.245 4.245 16 H 0.078 0.922 17 C -0.068 4.068 18 N -0.949 5.949 19 Si 0.977 3.023 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.269 1.269 23 C 0.132 3.868 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.421 0.579 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.008 0.992 39 H 0.002 0.998 40 H 0.247 0.753 41 H 0.026 0.974 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 -25.385 5.447 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.327 6.327 4 C -0.031 4.031 5 C 0.289 3.711 6 O -0.462 6.462 7 N -0.364 5.364 8 C -0.001 4.001 9 C -0.135 4.135 10 C -0.106 4.106 11 H 0.088 0.912 12 C -0.159 4.159 13 C 0.054 3.946 14 N -0.359 5.359 15 C -0.374 4.374 16 H 0.096 0.904 17 C -0.261 4.261 18 N -0.598 5.598 19 Si 0.805 3.195 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.194 1.194 23 C 0.007 3.993 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.026 0.974 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.030 -24.444 5.393 26.966 hybrid contribution 0.476 1.134 -0.581 1.361 sum -9.554 -23.309 4.812 25.647 Atomic orbital electron populations 1.21795 0.93633 1.03443 1.02276 1.22772 0.95989 0.81956 1.01890 1.87994 1.20048 1.28840 1.95819 1.22332 0.83315 0.91868 1.05542 1.21084 0.82614 0.91921 0.75506 1.90730 1.51157 1.53809 1.50552 1.45742 1.06901 1.08971 1.74801 1.21279 0.96073 0.81500 1.01256 1.21582 0.92653 0.94638 1.04622 1.22158 0.95895 0.95837 0.96736 0.91151 1.22756 0.95473 0.96668 1.01030 1.20959 0.88498 0.93140 0.91993 1.44868 1.19495 1.17657 1.53837 1.19459 1.07196 0.92547 1.18233 0.90448 1.25683 0.96816 1.01655 1.01897 1.70204 1.10380 1.31722 1.47531 0.85075 0.76842 0.79588 0.77954 1.21422 1.21835 1.19358 1.21854 0.92682 0.88786 0.95936 0.92870 0.93004 0.88485 0.91442 0.91259 0.87180 0.86863 0.74079 0.93426 0.92567 0.88172 0.89813 0.89919 0.90307 0.97380 0.97940 0.94370 0.95643 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.41 -8.65 9.88 -129.94 -1.28 -9.94 16 4 C 0.05 0.70 6.42 71.24 0.46 1.15 16 5 C 0.50 11.78 7.91 87.66 0.69 12.47 16 6 O -0.58 -21.13 16.50 16.01 0.26 -20.87 16 7 N -0.71 -12.57 5.56 -463.04 -2.57 -15.14 16 8 C 0.12 2.90 5.55 86.38 0.48 3.38 16 9 C -0.10 -2.00 4.84 30.59 0.15 -1.85 16 10 C -0.09 -2.72 3.04 -9.40 -0.03 -2.75 16 11 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 12 C -0.12 -4.15 6.42 31.78 0.20 -3.94 16 13 C 0.18 9.00 5.38 86.73 0.47 9.46 16 14 N -0.63 -33.77 3.40 -691.87 -2.35 -36.12 16 15 C -0.25 -14.41 10.26 84.04 0.86 -13.54 16 16 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 17 C -0.07 -3.99 5.48 84.86 0.46 -3.53 16 18 N -0.95 -58.81 10.36 21.65 0.22 -58.59 16 19 Si 0.98 47.40 29.56 68.60 2.03 49.43 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.13 5.48 6.04 86.85 0.52 6.00 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.42 3.71 8.47 -92.71 -0.79 2.92 16 32 H 0.05 1.38 7.59 -2.39 -0.02 1.37 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.08 2.37 8.04 -2.38 -0.02 2.35 16 38 H 0.01 0.45 7.30 -2.39 -0.02 0.43 16 39 H 0.00 0.13 7.61 -2.39 -0.02 0.12 16 40 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.03 1.02 7.96 -2.39 -0.02 1.00 16 42 H 0.03 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -82.49 343.65 2.00 -80.49 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 0.20 Total: 3.94 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.49 Total: 6.78 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -4.70 Total: -109.84 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.02 Total: -30.80 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -82.49 2.00 -80.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493985395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.714 kcal (2) G-P(sol) polarization free energy of solvation -82.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds