Wall clock time and date at job start Mon Mar 30 2020 01:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47493 * 2 1 4 4 C 1.42901 * 114.00273 * 185.56808 * 3 2 1 5 5 H 1.08999 * 109.47072 * 9.87815 * 4 3 2 6 6 C 1.50694 * 109.47457 * 129.88201 * 4 3 2 7 7 O 1.21284 * 119.99514 * 3.41790 * 6 4 3 8 8 N 1.34770 * 120.00079 * 183.69367 * 6 4 3 9 9 C 1.46503 * 119.99738 * 184.40745 * 8 6 4 10 10 C 1.53953 * 113.74231 * 253.74114 * 9 8 6 11 11 N 1.47817 * 86.03422 * 222.08621 * 10 9 8 12 12 C 1.36935 * 134.45232 * 204.64007 * 11 10 9 13 13 H 1.08001 * 120.00131 * 179.86766 * 12 11 10 14 14 C 1.38816 * 120.00280 * 359.87049 * 12 11 10 15 15 N 1.31621 * 119.99961 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00219 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47007 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47386 * 120.00051 * 16 14 12 19 19 H 1.48497 * 109.47054 * 240.00023 * 16 14 12 20 20 C 1.47576 * 91.05040 * 24.55001 * 11 10 9 21 21 C 1.53002 * 109.46850 * 249.88273 * 4 3 2 22 22 C 1.52999 * 109.47340 * 302.26223 * 21 4 3 23 23 C 1.52996 * 109.47380 * 62.26471 * 21 4 3 24 24 H 1.09003 * 109.46899 * 60.00071 * 1 2 3 25 25 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47474 * 300.00301 * 1 2 3 27 27 H 1.09000 * 109.47474 * 239.99698 * 2 1 3 28 28 H 1.08999 * 109.46977 * 120.00425 * 2 1 3 29 29 H 0.96997 * 120.00084 * 4.40731 * 8 6 4 30 30 H 1.09002 * 112.94964 * 25.33350 * 9 8 6 31 31 H 1.09006 * 113.76418 * 336.34900 * 10 9 8 32 32 H 1.08997 * 113.76732 * 107.74739 * 10 9 8 33 33 H 0.96994 * 120.00488 * 179.97438 * 15 14 12 34 34 H 1.09003 * 113.76464 * 221.15104 * 20 11 10 35 35 H 1.09000 * 113.77325 * 89.75884 * 20 11 10 36 36 H 1.08998 * 109.46890 * 182.26348 * 21 4 3 37 37 H 1.09008 * 109.46833 * 302.20259 * 22 21 4 38 38 H 1.09000 * 109.47055 * 62.19882 * 22 21 4 39 39 H 1.08994 * 109.47128 * 182.19933 * 22 21 4 40 40 H 1.09003 * 109.47450 * 58.89482 * 23 21 4 41 41 H 1.09004 * 109.47583 * 178.89361 * 23 21 4 42 42 H 1.09003 * 109.47266 * 298.89440 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4251 1.4621 -0.1267 5 1 3.8478 0.4884 -0.3743 6 6 3.7539 2.4453 -1.2203 7 8 2.8629 3.0400 -1.7890 8 7 5.0376 2.6596 -1.5702 9 6 5.3643 3.6845 -2.5648 10 6 5.7707 3.1115 -3.9348 11 7 6.8283 4.1442 -3.9381 12 6 7.5392 4.7856 -4.9171 13 1 8.2791 5.5257 -4.6502 14 6 7.3089 4.4846 -6.2525 15 7 6.4075 3.5824 -6.5778 16 14 8.2782 5.3601 -7.5879 17 1 9.2232 6.3210 -6.9644 18 1 9.0395 4.3625 -8.3818 19 1 7.3429 6.0924 -8.4791 20 6 6.8085 4.2079 -2.4639 21 6 4.0170 1.9535 1.1959 22 6 3.3821 3.2938 1.5721 23 6 3.7319 0.9279 2.2947 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8899 29 1 5.7451 2.1354 -1.1636 30 1 4.6147 4.4735 -2.6241 31 1 6.1527 2.0916 -3.8885 32 1 5.0171 3.2502 -4.7099 33 1 6.2462 3.3723 -7.5108 34 1 6.8821 5.2205 -2.0670 35 1 7.4961 3.5110 -1.9847 36 1 5.0942 2.0796 1.0872 37 1 3.5518 4.0137 0.7713 38 1 2.3104 3.1596 1.7189 39 1 3.8317 3.6628 2.4938 40 1 4.1675 -0.0322 2.0176 41 1 4.1705 1.2686 3.2326 42 1 2.6545 0.8163 2.4169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494385460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:58 Heat of formation + Delta-G solvation = -38.273503 kcal Electronic energy + Delta-G solvation = -21451.377888 eV Core-core repulsion = 18240.277155 eV Total energy + Delta-G solvation = -3211.100733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06976 -38.32674 -37.05899 -35.02664 -33.37589 -31.77580 -31.21923 -28.06038 -27.28176 -26.64374 -24.82128 -23.12856 -22.83554 -21.12056 -19.88291 -19.60424 -17.13312 -16.83330 -16.72481 -16.09109 -15.53949 -14.99616 -14.68506 -14.47001 -14.06603 -13.82405 -13.68338 -13.07327 -12.67724 -12.53945 -12.43327 -12.20814 -12.16254 -11.87267 -11.51483 -11.44948 -11.43497 -11.24622 -11.03784 -10.89126 -10.82955 -10.76786 -10.42072 -10.03379 -9.96001 -9.54816 -9.06204 -8.81620 -8.40992 -6.92131 -5.77488 -3.11607 2.90244 3.13704 3.39431 3.44135 3.47228 3.90589 4.45262 4.57217 4.66410 4.81621 4.92048 4.99326 5.06631 5.17840 5.22171 5.29980 5.43440 5.47976 5.51483 5.57380 5.59410 5.69951 5.77899 5.80746 5.92026 6.00228 6.02143 6.11973 6.21193 6.31668 6.41464 6.56119 6.77882 7.03086 7.24437 7.38201 7.57131 7.90717 7.96497 8.60024 9.02521 9.68924 10.55498 11.39287 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032697 B = 0.003831 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.142423 B = 7306.828251 C = 7838.392112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.350 6.350 4 C 0.076 3.924 5 H 0.084 0.916 6 C 0.504 3.496 7 O -0.522 6.522 8 N -0.716 5.716 9 C 0.094 3.906 10 C 0.154 3.846 11 N -0.607 5.607 12 C -0.226 4.226 13 H 0.082 0.918 14 C -0.006 4.006 15 N -0.918 5.918 16 Si 0.914 3.086 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.113 3.887 21 C -0.102 4.102 22 C -0.142 4.142 23 C -0.147 4.147 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.395 0.605 30 H 0.109 0.891 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 -8.448 18.286 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.268 6.268 4 C 0.015 3.985 5 H 0.102 0.898 6 C 0.289 3.711 7 O -0.396 6.396 8 N -0.368 5.368 9 C -0.010 4.010 10 C 0.027 3.973 11 N -0.334 5.334 12 C -0.353 4.353 13 H 0.100 0.900 14 C -0.203 4.203 15 N -0.565 5.565 16 Si 0.744 3.256 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.216 1.216 20 C -0.014 4.014 21 C -0.122 4.122 22 C -0.200 4.200 23 C -0.204 4.204 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.228 0.772 30 H 0.127 0.873 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.926 -7.748 17.549 20.395 hybrid contribution 1.192 -0.246 -0.669 1.388 sum -5.734 -7.994 16.880 19.538 Atomic orbital electron populations 1.21721 0.93657 1.02003 1.03376 1.22658 0.95896 0.83924 0.99944 1.88025 1.19056 1.25924 1.93767 1.22070 0.83831 0.98561 0.94087 0.89774 1.20588 0.83269 0.83661 0.83616 1.90717 1.46329 1.48981 1.53607 1.46122 1.07139 1.39688 1.43873 1.23871 0.96931 0.91011 0.89224 1.22713 0.90788 0.91366 0.92388 1.45729 1.44406 1.44089 0.99177 1.19034 1.15315 1.16044 0.84918 0.89994 1.24823 0.99401 0.99118 0.96977 1.69841 1.35291 1.34664 1.16677 0.86020 0.79040 0.78644 0.81880 1.20398 1.21717 1.21588 1.22867 0.92512 0.98338 0.87669 1.21467 1.00115 0.96991 0.93578 1.21727 1.01551 0.95582 1.01116 1.21851 1.02313 0.98104 0.98126 0.91542 0.91267 0.91926 0.93313 0.93282 0.77188 0.87316 0.95429 0.90527 0.93576 0.93257 0.94742 0.89858 0.92428 0.91693 0.92795 0.92828 0.92203 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.15 0.38 -0.98 16 2 C 0.05 0.53 6.10 37.15 0.23 0.76 16 3 O -0.35 -4.69 8.31 -55.12 -0.46 -5.15 16 4 C 0.08 0.93 2.37 -27.88 -0.07 0.87 16 5 H 0.08 0.84 7.58 -51.93 -0.39 0.45 16 6 C 0.50 8.27 6.00 -10.99 -0.07 8.21 16 7 O -0.52 -11.09 16.16 -14.33 -0.23 -11.33 16 8 N -0.72 -11.10 5.26 -55.33 -0.29 -11.39 16 9 C 0.09 1.86 4.37 -70.13 -0.31 1.56 16 10 C 0.15 3.74 7.33 -2.83 -0.02 3.72 16 11 N -0.61 -15.73 3.70 -177.86 -0.66 -16.39 16 12 C -0.23 -6.39 10.70 -15.06 -0.16 -6.55 16 13 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 14 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 15 N -0.92 -27.77 11.39 55.49 0.63 -27.14 16 16 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 C 0.11 2.26 8.69 -2.97 -0.03 2.23 16 21 C -0.10 -1.01 2.74 -90.62 -0.25 -1.26 16 22 C -0.14 -1.60 8.81 37.16 0.33 -1.28 16 23 C -0.15 -1.15 8.49 37.16 0.32 -0.83 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.49 8.06 -51.93 -0.42 0.07 16 28 H 0.05 0.39 6.99 -51.93 -0.36 0.03 16 29 H 0.39 4.83 8.50 -40.82 -0.35 4.48 16 30 H 0.11 2.36 7.57 -51.93 -0.39 1.97 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 2.13 7.17 -51.93 -0.37 1.76 16 33 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 37 H 0.06 0.78 7.22 -51.92 -0.37 0.40 16 38 H 0.06 0.78 7.69 -51.93 -0.40 0.38 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.52 6.95 -51.93 -0.36 0.16 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -34.20 342.06 -7.80 -41.99 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.18 Total: 0.79 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 0.26 Total: 6.17 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.32 Total: -54.92 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.69 Total: -16.47 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.20 -7.80 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494385460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.719 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds