Wall clock time and date at job start Mon Mar 30 2020 01:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47493 * 2 1 4 4 C 1.42901 * 114.00273 * 185.56808 * 3 2 1 5 5 H 1.08999 * 109.47072 * 9.87815 * 4 3 2 6 6 C 1.50694 * 109.47457 * 129.88201 * 4 3 2 7 7 O 1.21284 * 119.99514 * 3.41790 * 6 4 3 8 8 N 1.34770 * 120.00079 * 183.69367 * 6 4 3 9 9 C 1.46503 * 119.99738 * 184.40745 * 8 6 4 10 10 C 1.53953 * 113.74231 * 253.74114 * 9 8 6 11 11 N 1.47817 * 86.03422 * 222.08621 * 10 9 8 12 12 C 1.36935 * 134.45232 * 204.64007 * 11 10 9 13 13 H 1.08001 * 120.00131 * 179.86766 * 12 11 10 14 14 C 1.38816 * 120.00280 * 359.87049 * 12 11 10 15 15 N 1.31621 * 119.99961 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00219 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47007 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47386 * 120.00051 * 16 14 12 19 19 H 1.48497 * 109.47054 * 240.00023 * 16 14 12 20 20 C 1.47576 * 91.05040 * 24.55001 * 11 10 9 21 21 C 1.53002 * 109.46850 * 249.88273 * 4 3 2 22 22 C 1.52999 * 109.47340 * 302.26223 * 21 4 3 23 23 C 1.52996 * 109.47380 * 62.26471 * 21 4 3 24 24 H 1.09003 * 109.46899 * 60.00071 * 1 2 3 25 25 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47474 * 300.00301 * 1 2 3 27 27 H 1.09000 * 109.47474 * 239.99698 * 2 1 3 28 28 H 1.08999 * 109.46977 * 120.00425 * 2 1 3 29 29 H 0.96997 * 120.00084 * 4.40731 * 8 6 4 30 30 H 1.09002 * 112.94964 * 25.33350 * 9 8 6 31 31 H 1.09006 * 113.76418 * 336.34900 * 10 9 8 32 32 H 1.08997 * 113.76732 * 107.74739 * 10 9 8 33 33 H 0.96994 * 120.00488 * 179.97438 * 15 14 12 34 34 H 1.09003 * 113.76464 * 221.15104 * 20 11 10 35 35 H 1.09000 * 113.77325 * 89.75884 * 20 11 10 36 36 H 1.08998 * 109.46890 * 182.26348 * 21 4 3 37 37 H 1.09008 * 109.46833 * 302.20259 * 22 21 4 38 38 H 1.09000 * 109.47055 * 62.19882 * 22 21 4 39 39 H 1.08994 * 109.47128 * 182.19933 * 22 21 4 40 40 H 1.09003 * 109.47450 * 58.89482 * 23 21 4 41 41 H 1.09004 * 109.47583 * 178.89361 * 23 21 4 42 42 H 1.09003 * 109.47266 * 298.89440 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4251 1.4621 -0.1267 5 1 3.8478 0.4884 -0.3743 6 6 3.7539 2.4453 -1.2203 7 8 2.8629 3.0400 -1.7890 8 7 5.0376 2.6596 -1.5702 9 6 5.3643 3.6845 -2.5648 10 6 5.7707 3.1115 -3.9348 11 7 6.8283 4.1442 -3.9381 12 6 7.5392 4.7856 -4.9171 13 1 8.2791 5.5257 -4.6502 14 6 7.3089 4.4846 -6.2525 15 7 6.4075 3.5824 -6.5778 16 14 8.2782 5.3601 -7.5879 17 1 9.2232 6.3210 -6.9644 18 1 9.0395 4.3625 -8.3818 19 1 7.3429 6.0924 -8.4791 20 6 6.8085 4.2079 -2.4639 21 6 4.0170 1.9535 1.1959 22 6 3.3821 3.2938 1.5721 23 6 3.7319 0.9279 2.2947 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8899 29 1 5.7451 2.1354 -1.1636 30 1 4.6147 4.4735 -2.6241 31 1 6.1527 2.0916 -3.8885 32 1 5.0171 3.2502 -4.7099 33 1 6.2462 3.3723 -7.5108 34 1 6.8821 5.2205 -2.0670 35 1 7.4961 3.5110 -1.9847 36 1 5.0942 2.0796 1.0872 37 1 3.5518 4.0137 0.7713 38 1 2.3104 3.1596 1.7189 39 1 3.8317 3.6628 2.4938 40 1 4.1675 -0.0322 2.0176 41 1 4.1705 1.2686 3.2326 42 1 2.6545 0.8163 2.4169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494385460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:57 Heat of formation + Delta-G solvation = -61.908619 kcal Electronic energy + Delta-G solvation = -21452.402783 eV Core-core repulsion = 18240.277155 eV Total energy + Delta-G solvation = -3212.125628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.33878 -39.75598 -38.47405 -35.92296 -35.01281 -33.68585 -32.00203 -29.74377 -28.09130 -27.96296 -26.62955 -24.89970 -23.65867 -22.26135 -21.36858 -20.94861 -18.79073 -18.29914 -17.86332 -17.19928 -16.97444 -16.76448 -15.94528 -15.69391 -15.37622 -15.23565 -14.73695 -14.53336 -13.93472 -13.72944 -13.33050 -13.26008 -13.22971 -13.20555 -13.01127 -12.88789 -12.83836 -12.65723 -12.29858 -12.28600 -12.04664 -11.91430 -11.83787 -11.61169 -11.54152 -11.03243 -10.91547 -10.22631 -9.96208 -8.98754 -7.93223 -5.28804 1.44930 1.46947 1.57244 1.61365 1.95125 2.46873 2.91967 3.24845 3.38376 3.68232 3.73430 3.84300 3.94950 4.18299 4.22618 4.28746 4.33253 4.47057 4.51353 4.51450 4.72324 4.73933 4.83163 4.87409 4.89816 4.99348 5.04870 5.06041 5.16219 5.19992 5.22736 5.28718 5.42316 5.46705 5.48842 5.69276 5.87904 6.17506 6.65416 6.86725 7.31969 7.56917 8.49769 9.23889 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032697 B = 0.003831 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.142423 B = 7306.828251 C = 7838.392112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.378 6.378 4 C 0.082 3.918 5 H 0.114 0.886 6 C 0.501 3.499 7 O -0.578 6.578 8 N -0.699 5.699 9 C 0.122 3.878 10 C 0.152 3.848 11 N -0.639 5.639 12 C -0.234 4.234 13 H 0.092 0.908 14 C -0.070 4.070 15 N -0.957 5.957 16 Si 0.983 3.017 17 H -0.260 1.260 18 H -0.291 1.291 19 H -0.294 1.294 20 C 0.125 3.875 21 C -0.098 4.098 22 C -0.141 4.141 23 C -0.142 4.142 24 H 0.043 0.957 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.416 0.584 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.248 0.752 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.693 -9.428 20.759 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.296 6.296 4 C 0.021 3.979 5 H 0.132 0.868 6 C 0.288 3.712 7 O -0.457 6.457 8 N -0.353 5.353 9 C 0.015 3.985 10 C 0.025 3.975 11 N -0.367 5.367 12 C -0.363 4.363 13 H 0.110 0.890 14 C -0.263 4.263 15 N -0.605 5.605 16 Si 0.811 3.189 17 H -0.184 1.184 18 H -0.218 1.218 19 H -0.222 1.222 20 C 0.000 4.000 21 C -0.117 4.117 22 C -0.198 4.198 23 C -0.199 4.199 24 H 0.062 0.938 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.253 0.747 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.360 -8.749 20.098 22.565 hybrid contribution 0.653 0.045 -1.369 1.518 sum -4.706 -8.704 18.729 21.182 Atomic orbital electron populations 1.21755 0.93316 1.03322 1.02313 1.22902 0.96327 0.82686 1.01213 1.88012 1.19710 1.28120 1.93753 1.22156 0.83976 0.98349 0.93453 0.86835 1.21537 0.82454 0.83459 0.83761 1.90696 1.47940 1.51311 1.55729 1.45833 1.07961 1.38878 1.42639 1.23114 0.96658 0.90781 0.87936 1.22596 0.89810 0.91437 0.93689 1.46059 1.44638 1.44326 1.01642 1.19495 1.14969 1.15928 0.85871 0.89040 1.25731 1.00782 1.00351 0.99419 1.70054 1.37298 1.36682 1.16510 0.84939 0.77650 0.77607 0.78689 1.18404 1.21787 1.22164 1.23010 0.92512 1.00018 0.84493 1.21522 1.00719 0.96630 0.92811 1.21708 1.01146 0.95999 1.00970 1.21817 1.02217 0.98157 0.97674 0.93783 0.88751 0.91798 0.93386 0.90453 0.74663 0.89704 0.95436 0.95277 0.94304 0.91735 0.91168 0.87972 0.95423 0.93030 0.90752 0.91022 0.90879 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.04 0.82 6.10 71.98 0.44 1.26 16 3 O -0.38 -9.76 8.31 -129.96 -1.08 -10.84 16 4 C 0.08 1.85 2.37 29.85 0.07 1.92 16 5 H 0.11 1.88 7.58 -2.39 -0.02 1.87 16 6 C 0.50 16.24 6.00 87.66 0.53 16.77 16 7 O -0.58 -25.50 16.16 15.97 0.26 -25.24 16 8 N -0.70 -20.80 5.26 -447.37 -2.35 -23.15 16 9 C 0.12 4.80 4.37 46.75 0.20 5.01 16 10 C 0.15 7.57 7.33 86.44 0.63 8.20 16 11 N -0.64 -33.17 3.70 -716.62 -2.65 -35.83 16 12 C -0.23 -13.28 10.70 84.03 0.90 -12.38 16 13 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 14 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 15 N -0.96 -59.85 11.39 21.65 0.25 -59.60 16 16 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 20 C 0.12 4.76 8.69 86.49 0.75 5.51 16 21 C -0.10 -1.64 2.74 -10.79 -0.03 -1.67 16 22 C -0.14 -2.98 8.81 71.98 0.63 -2.34 16 23 C -0.14 -1.65 8.49 71.98 0.61 -1.04 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 0.87 8.06 -2.39 -0.02 0.86 16 28 H 0.08 0.98 6.99 -2.39 -0.02 0.96 16 29 H 0.42 8.90 8.50 -92.71 -0.79 8.12 16 30 H 0.08 3.81 7.57 -2.39 -0.02 3.80 16 31 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.03 1.71 7.17 -2.39 -0.02 1.69 16 33 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 36 H 0.10 1.35 7.87 -2.39 -0.02 1.33 16 37 H 0.03 0.73 7.22 -2.38 -0.02 0.71 16 38 H 0.05 1.21 7.69 -2.39 -0.02 1.19 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.05 0.74 6.95 -2.39 -0.02 0.73 16 Total: -1.00 -78.15 342.06 2.60 -75.56 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.20 Total: 14.88 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 5.95 Total: 15.80 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -4.76 Total: -118.58 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.82 Total: -36.08 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -78.15 2.60 -75.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494385460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.650 kcal (2) G-P(sol) polarization free energy of solvation -78.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds