Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47147 * 2 1 4 4 C 1.42904 * 113.99834 * 180.02562 * 3 2 1 5 5 H 1.08993 * 115.55346 * 4.41199 * 4 3 2 6 6 C 1.53001 * 117.49615 * 218.74794 * 4 3 2 7 7 C 1.52999 * 117.49969 * 150.08804 * 4 3 2 8 8 H 1.09005 * 117.49930 * 0.02562 * 7 4 3 9 9 C 1.50701 * 117.49971 * 214.99879 * 7 4 3 10 10 O 1.21277 * 120.00060 * 0.02562 * 9 7 4 11 11 N 1.34774 * 119.99993 * 179.97438 * 9 7 4 12 12 C 1.46495 * 120.00239 * 0.02562 * 11 9 7 13 13 C 1.46504 * 119.99869 * 180.02562 * 11 9 7 14 14 C 1.53001 * 109.47079 * 90.00757 * 13 11 9 15 15 N 1.46499 * 109.47391 * 180.02562 * 14 13 11 16 16 C 1.46504 * 120.00019 * 89.99613 * 15 14 13 17 17 C 1.36932 * 119.99983 * 269.99930 * 15 14 13 18 18 H 1.08001 * 119.99765 * 23.04133 * 17 15 14 19 19 C 1.38815 * 120.00088 * 203.04681 * 17 15 14 20 20 N 1.31617 * 119.99676 * 12.91943 * 19 17 15 21 21 Si 1.86804 * 119.99743 * 192.92531 * 19 17 15 22 22 H 1.48501 * 109.47257 * 59.99786 * 21 19 17 23 23 H 1.48498 * 109.46714 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46962 * 299.99405 * 21 19 17 25 25 H 1.08994 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46833 * 300.00253 * 1 2 3 27 27 H 1.09002 * 109.47062 * 59.99778 * 1 2 3 28 28 H 1.09004 * 109.46871 * 240.00054 * 2 1 3 29 29 H 1.09002 * 109.47062 * 120.00222 * 2 1 3 30 30 H 1.08996 * 117.49988 * 359.97155 * 6 4 3 31 31 H 1.08999 * 117.49774 * 144.97719 * 6 4 3 32 32 H 1.09002 * 109.47256 * 89.99453 * 12 11 9 33 33 H 1.09006 * 109.47448 * 209.99528 * 12 11 9 34 34 H 1.09000 * 109.46989 * 329.99593 * 12 11 9 35 35 H 1.09000 * 109.47221 * 209.99929 * 13 11 9 36 36 H 1.08995 * 109.47167 * 330.00603 * 13 11 9 37 37 H 1.09009 * 109.46592 * 299.99915 * 14 13 11 38 38 H 1.08998 * 109.47529 * 59.99446 * 14 13 11 39 39 H 1.08996 * 109.47350 * 95.12743 * 16 15 14 40 40 H 1.09001 * 109.46920 * 215.12571 * 16 15 14 41 41 H 1.08996 * 109.47079 * 335.12005 * 16 15 14 42 42 H 0.97003 * 119.99437 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9770 0.5198 -0.0766 6 6 4.0519 2.5708 0.8488 7 6 4.0421 2.6885 -0.6774 8 1 3.3575 3.4110 -1.1219 9 6 5.3529 2.5060 -1.3982 10 8 5.8827 1.4154 -1.4264 11 7 5.9358 3.5544 -2.0125 12 6 5.2957 4.8717 -1.9790 13 6 7.2099 3.3768 -2.7137 14 6 6.9411 2.9999 -4.1720 15 7 8.2151 2.8216 -4.8731 16 6 8.8547 1.5040 -4.9065 17 6 8.8080 3.8865 -5.4971 18 1 8.5735 4.8938 -5.1858 19 6 9.7103 3.6715 -6.5298 20 7 9.8085 2.4801 -7.0804 21 14 10.7853 5.0731 -7.1377 22 1 11.6293 5.5698 -6.0214 23 1 11.6563 4.5874 -8.2380 24 1 9.9252 6.1759 -7.6368 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3739 3.2158 1.4076 31 1 5.0064 2.3612 1.3317 32 1 5.6442 5.4230 -1.1056 33 1 5.5523 5.4236 -2.8833 34 1 4.2141 4.7486 -1.9231 35 1 7.7772 4.3068 -2.6775 36 1 7.7817 2.5833 -2.2327 37 1 6.3737 2.0698 -4.2081 38 1 6.3692 3.7933 -4.6529 39 1 8.5770 0.9885 -5.8258 40 1 9.9374 1.6247 -4.8705 41 1 8.5257 0.9186 -4.0480 42 1 10.4394 2.3298 -7.8018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496667690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = -24.160252 kcal Electronic energy + Delta-G solvation = -20855.101908 eV Core-core repulsion = 17644.613172 eV Total energy + Delta-G solvation = -3210.488736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07703 -38.33399 -36.17693 -35.11810 -34.84227 -31.49380 -31.02326 -28.73524 -26.52258 -25.78921 -24.73235 -23.14206 -22.57042 -22.14025 -20.41884 -18.79869 -17.79016 -16.68609 -16.24742 -16.10077 -15.77545 -15.43807 -14.70629 -14.58556 -13.92295 -13.60275 -13.18181 -13.10642 -12.91870 -12.77395 -12.67831 -12.41212 -12.33192 -12.14545 -11.92222 -11.44853 -11.26366 -11.16715 -10.83606 -10.80332 -10.68408 -10.49629 -10.18084 -9.88754 -9.78915 -9.64967 -9.32238 -8.66090 -8.34871 -6.68810 -5.68516 -3.16589 2.59409 2.96116 3.39536 3.43868 3.45608 3.47151 3.76682 4.52316 4.57722 4.60899 4.77323 4.82460 4.88354 5.01392 5.13143 5.21781 5.31579 5.43523 5.47064 5.50675 5.58938 5.63209 5.68421 5.73325 5.80479 5.83778 5.86629 6.19357 6.33230 6.58488 6.69645 6.91230 6.98274 7.00982 7.44529 7.63167 7.78076 7.83895 8.37339 8.44343 9.26764 9.90293 10.40632 11.35842 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.003336 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.040916 B = 8391.924940 C = 8759.103969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.358 6.358 4 C 0.051 3.949 5 H 0.125 0.875 6 C -0.155 4.155 7 C -0.191 4.191 8 H 0.129 0.871 9 C 0.539 3.461 10 O -0.542 6.542 11 N -0.605 5.605 12 C 0.078 3.922 13 C 0.092 3.908 14 C 0.143 3.857 15 N -0.600 5.600 16 C 0.162 3.838 17 C -0.258 4.258 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.906 5.906 21 Si 0.906 3.094 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.040 0.960 41 H 0.001 0.999 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 0.081 15.739 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.276 6.276 4 C -0.008 4.008 5 H 0.142 0.858 6 C -0.193 4.193 7 C -0.212 4.212 8 H 0.147 0.853 9 C 0.326 3.674 10 O -0.419 6.419 11 N -0.338 5.338 12 C -0.065 4.065 13 C -0.032 4.032 14 C 0.015 3.985 15 N -0.323 5.323 16 C 0.017 3.983 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.551 5.551 21 Si 0.735 3.265 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.210 1.210 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.311 -0.408 15.535 21.816 hybrid contribution 0.765 0.779 -0.518 1.208 sum -14.546 0.371 15.018 20.910 Atomic orbital electron populations 1.21754 0.93571 1.02407 1.03121 1.22574 0.95462 0.83246 1.00687 1.87790 1.18682 1.27151 1.94015 1.22607 0.81824 0.94526 1.01831 0.85792 1.23419 1.02907 1.02079 0.90903 1.22754 0.97868 1.04146 0.96471 0.85291 1.19505 0.85077 0.84122 0.78652 1.90693 1.64857 1.25095 1.61285 1.47882 1.23922 1.09058 1.52915 1.21816 0.97859 0.84351 1.02476 1.22548 0.82977 1.02336 0.95321 1.20974 0.88883 0.98725 0.89951 1.43838 1.20109 1.07724 1.60618 1.20806 0.96624 0.84920 0.95924 1.19129 1.21292 0.86926 1.11445 0.91532 1.25045 1.01276 0.96747 0.96584 1.70077 1.37928 1.21160 1.25916 0.86327 0.80457 0.81582 0.78090 1.21088 1.21624 1.20956 0.90912 0.91888 0.91755 0.92762 0.92983 0.87306 0.87575 0.92757 0.90601 0.91272 0.90725 0.90567 0.94389 0.93667 0.95103 0.94124 0.98023 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.51 6.53 37.16 0.24 0.75 16 3 O -0.36 -4.11 10.60 -35.23 -0.37 -4.48 16 4 C 0.05 0.60 5.95 -26.73 -0.16 0.44 16 5 H 0.12 1.54 7.45 -51.93 -0.39 1.15 16 6 C -0.16 -1.57 10.19 -26.69 -0.27 -1.84 16 7 C -0.19 -2.33 5.24 -91.73 -0.48 -2.81 16 8 H 0.13 1.38 6.44 -51.93 -0.33 1.05 16 9 C 0.54 8.65 7.46 -10.99 -0.08 8.57 16 10 O -0.54 -10.74 15.84 5.56 0.09 -10.65 16 11 N -0.61 -9.39 2.87 -181.57 -0.52 -9.91 16 12 C 0.08 0.88 10.27 59.84 0.61 1.49 16 13 C 0.09 1.74 5.73 -4.04 -0.02 1.72 16 14 C 0.14 3.15 5.97 -4.04 -0.02 3.13 16 15 N -0.60 -15.79 2.92 -181.12 -0.53 -16.32 16 16 C 0.16 4.26 8.98 59.85 0.54 4.80 16 17 C -0.26 -7.21 9.65 -15.06 -0.15 -7.35 16 18 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 19 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 20 N -0.91 -27.09 10.71 55.49 0.59 -26.50 16 21 Si 0.91 22.01 29.57 -169.99 -5.03 16.98 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.85 8.07 -51.93 -0.42 0.44 16 34 H 0.07 0.63 5.99 -51.93 -0.31 0.32 16 35 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 36 H 0.08 1.59 7.42 -51.93 -0.39 1.20 16 37 H 0.04 0.87 8.07 -51.92 -0.42 0.45 16 38 H 0.04 0.97 8.04 -51.93 -0.42 0.55 16 39 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 40 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 41 H 0.00 0.03 8.03 -51.93 -0.42 -0.39 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -33.08 348.76 -7.21 -40.29 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.20 Total: -2.83 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 0.50 Total: 8.17 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.46 Total: -52.73 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.29 Total: -15.14 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.08 -7.21 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496667690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.134 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds