Wall clock time and date at job start Mon Mar 30 2020 01:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47147 * 2 1 4 4 C 1.42904 * 113.99834 * 180.02562 * 3 2 1 5 5 H 1.08993 * 115.55346 * 4.41199 * 4 3 2 6 6 C 1.53001 * 117.49615 * 218.74794 * 4 3 2 7 7 C 1.52999 * 117.49969 * 150.08804 * 4 3 2 8 8 H 1.09005 * 117.49930 * 0.02562 * 7 4 3 9 9 C 1.50701 * 117.49971 * 214.99879 * 7 4 3 10 10 O 1.21277 * 120.00060 * 0.02562 * 9 7 4 11 11 N 1.34774 * 119.99993 * 179.97438 * 9 7 4 12 12 C 1.46495 * 120.00239 * 0.02562 * 11 9 7 13 13 C 1.46504 * 119.99869 * 180.02562 * 11 9 7 14 14 C 1.53001 * 109.47079 * 90.00757 * 13 11 9 15 15 N 1.46499 * 109.47391 * 180.02562 * 14 13 11 16 16 C 1.46504 * 120.00019 * 89.99613 * 15 14 13 17 17 C 1.36932 * 119.99983 * 269.99930 * 15 14 13 18 18 H 1.08001 * 119.99765 * 23.04133 * 17 15 14 19 19 C 1.38815 * 120.00088 * 203.04681 * 17 15 14 20 20 N 1.31617 * 119.99676 * 12.91943 * 19 17 15 21 21 Si 1.86804 * 119.99743 * 192.92531 * 19 17 15 22 22 H 1.48501 * 109.47257 * 59.99786 * 21 19 17 23 23 H 1.48498 * 109.46714 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46962 * 299.99405 * 21 19 17 25 25 H 1.08994 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46833 * 300.00253 * 1 2 3 27 27 H 1.09002 * 109.47062 * 59.99778 * 1 2 3 28 28 H 1.09004 * 109.46871 * 240.00054 * 2 1 3 29 29 H 1.09002 * 109.47062 * 120.00222 * 2 1 3 30 30 H 1.08996 * 117.49988 * 359.97155 * 6 4 3 31 31 H 1.08999 * 117.49774 * 144.97719 * 6 4 3 32 32 H 1.09002 * 109.47256 * 89.99453 * 12 11 9 33 33 H 1.09006 * 109.47448 * 209.99528 * 12 11 9 34 34 H 1.09000 * 109.46989 * 329.99593 * 12 11 9 35 35 H 1.09000 * 109.47221 * 209.99929 * 13 11 9 36 36 H 1.08995 * 109.47167 * 330.00603 * 13 11 9 37 37 H 1.09009 * 109.46592 * 299.99915 * 14 13 11 38 38 H 1.08998 * 109.47529 * 59.99446 * 14 13 11 39 39 H 1.08996 * 109.47350 * 95.12743 * 16 15 14 40 40 H 1.09001 * 109.46920 * 215.12571 * 16 15 14 41 41 H 1.08996 * 109.47079 * 335.12005 * 16 15 14 42 42 H 0.97003 * 119.99437 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9770 0.5198 -0.0766 6 6 4.0519 2.5708 0.8488 7 6 4.0421 2.6885 -0.6774 8 1 3.3575 3.4110 -1.1219 9 6 5.3529 2.5060 -1.3982 10 8 5.8827 1.4154 -1.4264 11 7 5.9358 3.5544 -2.0125 12 6 5.2957 4.8717 -1.9790 13 6 7.2099 3.3768 -2.7137 14 6 6.9411 2.9999 -4.1720 15 7 8.2151 2.8216 -4.8731 16 6 8.8547 1.5040 -4.9065 17 6 8.8080 3.8865 -5.4971 18 1 8.5735 4.8938 -5.1858 19 6 9.7103 3.6715 -6.5298 20 7 9.8085 2.4801 -7.0804 21 14 10.7853 5.0731 -7.1377 22 1 11.6293 5.5698 -6.0214 23 1 11.6563 4.5874 -8.2380 24 1 9.9252 6.1759 -7.6368 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3739 3.2158 1.4076 31 1 5.0064 2.3612 1.3317 32 1 5.6442 5.4230 -1.1056 33 1 5.5523 5.4236 -2.8833 34 1 4.2141 4.7486 -1.9231 35 1 7.7772 4.3068 -2.6775 36 1 7.7817 2.5833 -2.2327 37 1 6.3737 2.0698 -4.2081 38 1 6.3692 3.7933 -4.6529 39 1 8.5770 0.9885 -5.8258 40 1 9.9374 1.6247 -4.8705 41 1 8.5257 0.9186 -4.0480 42 1 10.4394 2.3298 -7.8018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496667690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:56 Heat of formation + Delta-G solvation = -45.143201 kcal Electronic energy + Delta-G solvation = -20856.011797 eV Core-core repulsion = 17644.613172 eV Total energy + Delta-G solvation = -3211.398625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25706 -39.29213 -37.86013 -36.42728 -36.08093 -33.47340 -31.73390 -30.41288 -28.01351 -27.53880 -26.25766 -23.97941 -23.80241 -23.08922 -22.25530 -19.96427 -18.87657 -18.66701 -17.47325 -17.26660 -16.88082 -16.50332 -16.37359 -15.70712 -15.54400 -15.31518 -14.68314 -14.41802 -14.04553 -13.90852 -13.71109 -13.65001 -13.42271 -13.07721 -13.05656 -13.02228 -12.76548 -12.71152 -12.49012 -12.18328 -12.16531 -11.93745 -11.88778 -11.67816 -11.59175 -10.91109 -10.68385 -10.20603 -9.79520 -8.78393 -7.83617 -5.35830 1.41720 1.47421 1.50950 1.57299 1.87106 2.47540 2.55636 2.82036 3.29928 3.53667 3.69402 3.76244 3.93910 4.02754 4.15381 4.17751 4.26654 4.38409 4.41203 4.46973 4.51792 4.62816 4.73888 4.77680 4.78710 4.86061 4.91039 4.96321 5.02843 5.03564 5.09581 5.26575 5.27602 5.52914 5.59127 5.63678 6.17363 6.29369 6.41579 7.10006 7.14436 7.80402 8.28396 9.20117 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.003336 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.040916 B = 8391.924940 C = 8759.103969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.367 6.367 4 C 0.041 3.959 5 H 0.109 0.891 6 C -0.130 4.130 7 C -0.194 4.194 8 H 0.150 0.850 9 C 0.533 3.467 10 O -0.589 6.589 11 N -0.606 5.606 12 C 0.072 3.928 13 C 0.112 3.888 14 C 0.149 3.851 15 N -0.617 5.617 16 C 0.179 3.821 17 C -0.267 4.267 18 H 0.080 0.920 19 C -0.057 4.057 20 N -0.942 5.942 21 Si 0.977 3.023 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.271 1.271 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.023 0.977 38 H 0.052 0.948 39 H 0.005 0.995 40 H 0.020 0.980 41 H 0.018 0.982 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.976 2.165 17.202 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.286 6.286 4 C -0.018 4.018 5 H 0.127 0.873 6 C -0.167 4.167 7 C -0.215 4.215 8 H 0.167 0.833 9 C 0.322 3.678 10 O -0.470 6.470 11 N -0.338 5.338 12 C -0.069 4.069 13 C -0.014 4.014 14 C 0.021 3.979 15 N -0.341 5.341 16 C 0.034 3.966 17 C -0.397 4.397 18 H 0.097 0.903 19 C -0.252 4.252 20 N -0.589 5.589 21 Si 0.804 3.196 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.196 1.196 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.153 0.847 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.729 1.724 17.035 23.938 hybrid contribution 1.103 0.086 -0.938 1.451 sum -15.626 1.809 16.097 22.507 Atomic orbital electron populations 1.21763 0.92020 1.03618 1.03025 1.22785 0.96730 0.82383 1.00916 1.87771 1.18196 1.28485 1.94109 1.22577 0.82152 0.94211 1.02820 0.87288 1.23504 1.03029 1.00774 0.89401 1.22708 0.95929 1.05186 0.97693 0.83290 1.20211 0.86011 0.83329 0.78211 1.90671 1.66357 1.26995 1.63020 1.47936 1.22866 1.10872 1.52076 1.22111 0.99131 0.82102 1.03564 1.21969 0.84615 1.01678 0.93108 1.21029 0.87099 0.98223 0.91523 1.44077 1.21476 1.07283 1.61266 1.20504 0.95414 0.85423 0.95272 1.19552 1.21179 0.87783 1.11172 0.90267 1.25940 1.02841 0.99321 0.97068 1.70262 1.38685 1.23370 1.26562 0.85202 0.78477 0.78600 0.77303 1.20197 1.22280 1.19631 0.89099 0.91450 0.92313 0.93483 0.91905 0.84715 0.87554 0.90489 0.90584 0.88811 0.89924 0.92977 0.95855 0.92983 0.97690 0.96088 0.96391 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.81 6.53 71.98 0.47 1.28 16 3 O -0.37 -7.84 10.60 -148.98 -1.58 -9.42 16 4 C 0.04 0.92 5.95 30.59 0.18 1.10 16 5 H 0.11 2.74 7.45 -2.39 -0.02 2.72 16 6 C -0.13 -2.28 10.19 30.62 0.31 -1.96 16 7 C -0.19 -4.33 5.24 -11.51 -0.06 -4.39 16 8 H 0.15 2.70 6.44 -2.38 -0.02 2.68 16 9 C 0.53 16.69 7.46 87.66 0.65 17.34 16 10 O -0.59 -23.82 15.84 -3.02 -0.05 -23.87 16 11 N -0.61 -17.93 2.87 -846.76 -2.43 -20.36 16 12 C 0.07 1.40 10.27 127.77 1.31 2.71 16 13 C 0.11 4.17 5.73 86.38 0.50 4.66 16 14 C 0.15 6.55 5.97 86.38 0.52 7.07 16 15 N -0.62 -32.87 2.92 -726.93 -2.12 -34.99 16 16 C 0.18 9.73 8.98 127.77 1.15 10.88 16 17 C -0.27 -14.84 9.65 84.04 0.81 -14.03 16 18 H 0.08 4.11 7.86 -2.91 -0.02 4.09 16 19 C -0.06 -3.24 5.10 84.86 0.43 -2.81 16 20 N -0.94 -57.51 10.71 21.65 0.23 -57.28 16 21 Si 0.98 45.13 29.57 68.60 2.03 47.16 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.49 8.07 -2.38 -0.02 1.47 16 34 H 0.09 1.36 5.99 -2.39 -0.01 1.35 16 35 H 0.08 2.95 8.07 -2.39 -0.02 2.93 16 36 H 0.05 2.20 7.42 -2.39 -0.02 2.18 16 37 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 38 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 39 H 0.00 0.28 7.34 -2.39 -0.02 0.27 16 40 H 0.02 1.18 7.34 -2.39 -0.02 1.16 16 41 H 0.02 0.88 8.03 -2.39 -0.02 0.86 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -72.31 348.76 4.06 -68.25 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.98 Total: 9.77 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 7.01 Total: 20.74 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.33 Total: -112.63 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.63 Total: -33.29 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.31 4.06 -68.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496667690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.106 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds