Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47357 * 2 1 4 4 C 1.42903 * 113.99980 * 180.02562 * 3 2 1 5 5 H 1.08995 * 115.55869 * 355.68585 * 4 3 2 6 6 C 1.53002 * 117.49742 * 141.38062 * 4 3 2 7 7 C 1.53002 * 60.00094 * 107.48608 * 6 4 3 8 8 H 1.09002 * 117.49791 * 252.48574 * 7 6 4 9 9 C 1.50698 * 117.49803 * 107.48682 * 7 6 4 10 10 O 1.21279 * 120.00123 * 291.39588 * 9 7 6 11 11 N 1.34778 * 119.99736 * 111.39283 * 9 7 6 12 12 C 1.46491 * 120.00350 * 359.97438 * 11 9 7 13 13 C 1.46504 * 119.99678 * 180.02562 * 11 9 7 14 14 C 1.52995 * 109.47794 * 89.99685 * 13 11 9 15 15 N 1.46499 * 109.47327 * 179.97438 * 14 13 11 16 16 C 1.46498 * 119.99879 * 269.99939 * 15 14 13 17 17 C 1.36931 * 119.99621 * 90.00079 * 15 14 13 18 18 H 1.08000 * 120.00670 * 336.27137 * 17 15 14 19 19 C 1.38818 * 119.99805 * 156.27305 * 17 15 14 20 20 N 1.31624 * 119.99539 * 330.10341 * 19 17 15 21 21 Si 1.86793 * 119.99970 * 150.38069 * 19 17 15 22 22 H 1.48501 * 109.47106 * 179.72536 * 21 19 17 23 23 H 1.48498 * 109.47322 * 299.72642 * 21 19 17 24 24 H 1.48498 * 109.47186 * 59.72663 * 21 19 17 25 25 H 1.09001 * 109.46826 * 299.99732 * 1 2 3 26 26 H 1.08995 * 109.47176 * 59.99475 * 1 2 3 27 27 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47347 * 239.99490 * 2 1 3 29 29 H 1.09008 * 109.47115 * 120.00182 * 2 1 3 30 30 H 1.08997 * 117.49554 * 359.97438 * 6 4 3 31 31 H 1.08999 * 117.49800 * 214.97791 * 6 4 3 32 32 H 1.09001 * 109.47669 * 270.00576 * 12 11 9 33 33 H 1.09004 * 109.47045 * 30.00029 * 12 11 9 34 34 H 1.09000 * 109.47313 * 150.00002 * 12 11 9 35 35 H 1.09001 * 109.46959 * 329.98922 * 13 11 9 36 36 H 1.09000 * 109.46581 * 209.99735 * 13 11 9 37 37 H 1.09002 * 109.46768 * 59.99742 * 14 13 11 38 38 H 1.09001 * 109.46740 * 300.00424 * 14 13 11 39 39 H 1.08999 * 109.47509 * 272.93434 * 16 15 14 40 40 H 1.09005 * 109.47062 * 32.93447 * 16 15 14 41 41 H 1.08996 * 109.47092 * 152.93655 * 16 15 14 42 42 H 0.96996 * 120.00214 * 354.90894 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9771 0.5197 0.0730 6 6 4.0511 2.5730 -0.8478 7 6 4.0427 2.6874 0.6780 8 1 3.3588 3.4091 1.1247 9 6 5.3543 2.5036 1.3968 10 8 5.8847 1.4132 1.4215 11 7 5.9380 3.5510 2.0122 12 6 5.2977 4.8682 1.9819 13 6 7.2134 3.3724 2.7105 14 6 8.3672 3.6285 1.7390 15 7 9.6426 3.4505 2.4375 16 6 10.2767 4.5893 3.1061 17 6 10.2419 2.2196 2.4655 18 1 9.6487 1.3269 2.3321 19 6 11.6119 2.1190 2.6653 20 7 12.4089 3.0839 2.2575 21 14 12.3250 0.6110 3.5057 22 1 13.8016 0.7438 3.5914 23 1 11.7585 0.4920 4.8732 24 1 11.9819 -0.6019 2.7206 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.3725 3.2188 -1.4049 31 1 5.0054 2.3648 -1.3316 32 1 5.6450 5.4212 1.1092 33 1 4.2160 4.7452 1.9271 34 1 5.5554 5.4184 2.8869 35 1 7.2791 2.3536 3.0923 36 1 7.2746 4.0761 3.5408 37 1 8.3015 4.6474 1.3573 38 1 8.3059 2.9249 0.9087 39 1 10.8993 5.1291 2.3926 40 1 9.5075 5.2568 3.4949 41 1 10.8951 4.2296 3.9285 42 1 12.0487 3.8297 1.7526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496667692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -26.547084 kcal Electronic energy + Delta-G solvation = -20927.711220 eV Core-core repulsion = 17717.118982 eV Total energy + Delta-G solvation = -3210.592237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09308 -38.35019 -36.32213 -35.17004 -35.00814 -31.52719 -31.03742 -28.75389 -26.54868 -25.95026 -24.57440 -23.15586 -22.57212 -22.12772 -20.45167 -18.79567 -17.83842 -17.28408 -16.27770 -16.16629 -15.78818 -15.20398 -14.95995 -14.10480 -14.05579 -13.71503 -13.41086 -13.14653 -12.93283 -12.80817 -12.76271 -12.71913 -12.36760 -12.25178 -11.97491 -11.47221 -11.37601 -11.17855 -10.94142 -10.73168 -10.66580 -10.55239 -10.15670 -9.95911 -9.67275 -9.40965 -9.33604 -8.63630 -8.19460 -6.87971 -6.02911 -3.14656 2.60296 2.91496 3.42196 3.56699 3.58806 3.77221 3.78149 4.56055 4.59983 4.68256 4.75965 4.80930 4.86221 4.98724 5.10968 5.16361 5.28165 5.33967 5.42838 5.48901 5.57515 5.59695 5.61129 5.62288 5.72964 5.81423 5.83777 6.08536 6.16781 6.45596 6.56719 6.64382 6.84815 6.97498 7.02383 7.10182 7.58387 8.08968 8.37850 8.63367 9.16458 9.91581 10.28270 11.25080 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.003668 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.404176 B = 7631.960784 C = 8348.939718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.358 6.358 4 C 0.050 3.950 5 H 0.125 0.875 6 C -0.154 4.154 7 C -0.192 4.192 8 H 0.128 0.872 9 C 0.538 3.462 10 O -0.534 6.534 11 N -0.608 5.608 12 C 0.080 3.920 13 C 0.095 3.905 14 C 0.144 3.856 15 N -0.602 5.602 16 C 0.135 3.865 17 C -0.358 4.358 18 H 0.060 0.940 19 C -0.021 4.021 20 N -0.912 5.912 21 Si 1.060 2.940 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.292 1.292 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.010 0.990 40 H 0.013 0.987 41 H 0.052 0.948 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.144 1.260 -3.760 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.277 6.277 4 C -0.008 4.008 5 H 0.143 0.857 6 C -0.192 4.192 7 C -0.213 4.213 8 H 0.146 0.854 9 C 0.326 3.674 10 O -0.411 6.411 11 N -0.341 5.341 12 C -0.064 4.064 13 C -0.029 4.029 14 C 0.016 3.984 15 N -0.326 5.326 16 C -0.010 4.010 17 C -0.487 4.487 18 H 0.078 0.922 19 C -0.224 4.224 20 N -0.552 5.552 21 Si 0.890 3.110 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.219 1.219 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.533 0.158 -3.155 20.775 hybrid contribution -1.347 0.746 -0.498 1.618 sum -21.880 0.904 -3.653 22.201 Atomic orbital electron populations 1.21753 0.93583 1.02398 1.03087 1.22573 0.95424 0.83269 1.00722 1.87784 1.18726 1.27137 1.94034 1.22619 0.81740 0.94558 1.01925 0.85737 1.23423 1.03052 1.01888 0.90801 1.22735 0.97732 1.04137 0.96700 0.85414 1.19520 0.85016 0.84101 0.78801 1.90730 1.64989 1.25230 1.60171 1.47852 1.23229 1.09060 1.53961 1.21803 0.97744 0.84427 1.02394 1.22460 0.81495 1.03167 0.95771 1.20971 0.85806 0.98053 0.93566 1.43899 1.20783 1.07932 1.59990 1.20968 0.94942 0.89132 0.95954 1.19974 0.92699 0.84081 1.51946 0.92178 1.25777 0.92243 1.04077 1.00270 1.70799 1.36551 1.12936 1.34902 0.83597 0.75860 0.75018 0.76522 1.21197 1.22088 1.21918 0.91837 0.91848 0.90911 0.92897 0.92841 0.87257 0.87362 0.92574 0.91283 0.91128 0.89816 0.91509 0.95076 0.93137 0.97174 0.96839 0.92939 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.51 6.53 37.16 0.24 0.75 16 3 O -0.36 -4.14 10.60 -35.23 -0.37 -4.52 16 4 C 0.05 0.61 5.96 -26.73 -0.16 0.45 16 5 H 0.13 1.63 7.45 -51.93 -0.39 1.24 16 6 C -0.15 -1.69 10.18 -26.73 -0.27 -1.96 16 7 C -0.19 -2.39 5.24 -91.77 -0.48 -2.87 16 8 H 0.13 1.35 6.44 -51.93 -0.33 1.01 16 9 C 0.54 8.91 7.46 -10.99 -0.08 8.83 16 10 O -0.53 -11.16 15.84 5.56 0.09 -11.07 16 11 N -0.61 -9.48 2.87 -181.58 -0.52 -10.00 16 12 C 0.08 0.86 10.31 59.84 0.62 1.48 16 13 C 0.10 1.81 5.77 -4.04 -0.02 1.79 16 14 C 0.14 3.18 6.00 -4.04 -0.02 3.15 16 15 N -0.60 -15.71 2.80 -181.12 -0.51 -16.22 16 16 C 0.14 3.27 8.99 59.85 0.54 3.81 16 17 C -0.36 -10.50 9.46 -15.06 -0.14 -10.64 16 18 H 0.06 1.82 7.98 -52.49 -0.42 1.40 16 19 C -0.02 -0.62 4.60 -17.43 -0.08 -0.70 16 20 N -0.91 -28.10 12.75 55.49 0.71 -27.40 16 21 Si 1.06 26.26 30.01 -169.99 -5.10 21.16 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.59 5.99 -51.93 -0.31 0.28 16 34 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 35 H 0.08 1.86 7.42 -51.93 -0.39 1.47 16 36 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 37 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 38 H 0.05 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.01 0.26 6.87 -51.93 -0.36 -0.10 16 40 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 41 H 0.05 1.36 7.28 -51.93 -0.38 0.98 16 42 H 0.27 8.32 6.38 -40.82 -0.26 8.06 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -34.42 347.92 -7.04 -41.46 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.09 Total: -2.06 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 0.52 Total: 3.41 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.32 Total: -53.61 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.29 Total: -15.59 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.10 Total: 21.16 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.42 -7.04 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496667692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.909 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds