Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47357 * 2 1 4 4 C 1.42903 * 113.99980 * 180.02562 * 3 2 1 5 5 H 1.08995 * 115.55869 * 355.68585 * 4 3 2 6 6 C 1.53002 * 117.49742 * 141.38062 * 4 3 2 7 7 C 1.53002 * 60.00094 * 107.48608 * 6 4 3 8 8 H 1.09002 * 117.49791 * 252.48574 * 7 6 4 9 9 C 1.50698 * 117.49803 * 107.48682 * 7 6 4 10 10 O 1.21279 * 120.00123 * 291.39588 * 9 7 6 11 11 N 1.34778 * 119.99736 * 111.39283 * 9 7 6 12 12 C 1.46491 * 120.00350 * 359.97438 * 11 9 7 13 13 C 1.46504 * 119.99678 * 180.02562 * 11 9 7 14 14 C 1.52995 * 109.47794 * 89.99685 * 13 11 9 15 15 N 1.46499 * 109.47327 * 179.97438 * 14 13 11 16 16 C 1.46498 * 119.99879 * 269.99939 * 15 14 13 17 17 C 1.36931 * 119.99621 * 90.00079 * 15 14 13 18 18 H 1.08000 * 120.00670 * 336.27137 * 17 15 14 19 19 C 1.38818 * 119.99805 * 156.27305 * 17 15 14 20 20 N 1.31624 * 119.99539 * 330.10341 * 19 17 15 21 21 Si 1.86793 * 119.99970 * 150.38069 * 19 17 15 22 22 H 1.48501 * 109.47106 * 179.72536 * 21 19 17 23 23 H 1.48498 * 109.47322 * 299.72642 * 21 19 17 24 24 H 1.48498 * 109.47186 * 59.72663 * 21 19 17 25 25 H 1.09001 * 109.46826 * 299.99732 * 1 2 3 26 26 H 1.08995 * 109.47176 * 59.99475 * 1 2 3 27 27 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47347 * 239.99490 * 2 1 3 29 29 H 1.09008 * 109.47115 * 120.00182 * 2 1 3 30 30 H 1.08997 * 117.49554 * 359.97438 * 6 4 3 31 31 H 1.08999 * 117.49800 * 214.97791 * 6 4 3 32 32 H 1.09001 * 109.47669 * 270.00576 * 12 11 9 33 33 H 1.09004 * 109.47045 * 30.00029 * 12 11 9 34 34 H 1.09000 * 109.47313 * 150.00002 * 12 11 9 35 35 H 1.09001 * 109.46959 * 329.98922 * 13 11 9 36 36 H 1.09000 * 109.46581 * 209.99735 * 13 11 9 37 37 H 1.09002 * 109.46768 * 59.99742 * 14 13 11 38 38 H 1.09001 * 109.46740 * 300.00424 * 14 13 11 39 39 H 1.08999 * 109.47509 * 272.93434 * 16 15 14 40 40 H 1.09005 * 109.47062 * 32.93447 * 16 15 14 41 41 H 1.08996 * 109.47092 * 152.93655 * 16 15 14 42 42 H 0.96996 * 120.00214 * 354.90894 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9771 0.5197 0.0730 6 6 4.0511 2.5730 -0.8478 7 6 4.0427 2.6874 0.6780 8 1 3.3588 3.4091 1.1247 9 6 5.3543 2.5036 1.3968 10 8 5.8847 1.4132 1.4215 11 7 5.9380 3.5510 2.0122 12 6 5.2977 4.8682 1.9819 13 6 7.2134 3.3724 2.7105 14 6 8.3672 3.6285 1.7390 15 7 9.6426 3.4505 2.4375 16 6 10.2767 4.5893 3.1061 17 6 10.2419 2.2196 2.4655 18 1 9.6487 1.3269 2.3321 19 6 11.6119 2.1190 2.6653 20 7 12.4089 3.0839 2.2575 21 14 12.3250 0.6110 3.5057 22 1 13.8016 0.7438 3.5914 23 1 11.7585 0.4920 4.8732 24 1 11.9819 -0.6019 2.7206 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.3725 3.2188 -1.4049 31 1 5.0054 2.3648 -1.3316 32 1 5.6450 5.4212 1.1092 33 1 4.2160 4.7452 1.9271 34 1 5.5554 5.4184 2.8869 35 1 7.2791 2.3536 3.0923 36 1 7.2746 4.0761 3.5408 37 1 8.3015 4.6474 1.3573 38 1 8.3059 2.9249 0.9087 39 1 10.8993 5.1291 2.3926 40 1 9.5075 5.2568 3.4949 41 1 10.8951 4.2296 3.9285 42 1 12.0487 3.8297 1.7526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496667692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -49.154878 kcal Electronic energy + Delta-G solvation = -20928.691567 eV Core-core repulsion = 17717.118982 eV Total energy + Delta-G solvation = -3211.572585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31455 -39.34038 -38.08656 -36.59510 -36.13157 -33.53325 -31.75566 -30.43078 -28.01612 -27.60360 -26.16701 -23.99762 -23.82621 -23.14360 -22.31530 -20.00374 -19.45355 -18.86346 -17.45547 -17.32927 -16.61789 -16.52885 -16.25960 -16.05651 -15.61876 -15.31639 -15.05488 -14.51483 -14.15042 -13.96504 -13.74916 -13.70781 -13.46226 -13.14990 -13.07216 -13.06007 -12.86963 -12.79707 -12.48806 -12.19481 -12.00753 -11.91240 -11.87832 -11.66074 -11.52271 -10.95783 -10.53638 -10.25068 -9.86183 -8.99747 -8.32495 -5.43415 1.37936 1.54995 1.61542 1.78695 1.82562 2.46174 2.63497 2.78175 3.13458 3.47921 3.58894 3.68410 3.87342 3.98147 4.05555 4.15230 4.22761 4.32190 4.34528 4.42525 4.47689 4.49017 4.59698 4.68760 4.74228 4.78893 4.86187 4.88774 4.92868 4.99029 5.00921 5.09266 5.13024 5.25826 5.48145 5.79267 6.13086 6.32516 6.36627 6.99062 7.10552 7.73241 8.08136 8.91915 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.003668 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.404176 B = 7631.960784 C = 8348.939718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.364 6.364 4 C 0.044 3.956 5 H 0.107 0.893 6 C -0.136 4.136 7 C -0.188 4.188 8 H 0.156 0.844 9 C 0.530 3.470 10 O -0.591 6.591 11 N -0.607 5.607 12 C 0.072 3.928 13 C 0.113 3.887 14 C 0.150 3.850 15 N -0.621 5.621 16 C 0.145 3.855 17 C -0.367 4.367 18 H 0.038 0.962 19 C -0.067 4.067 20 N -0.933 5.933 21 Si 1.109 2.891 22 H -0.285 1.285 23 H -0.279 1.279 24 H -0.282 1.282 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.016 0.984 39 H -0.002 1.002 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.253 2.416 -3.627 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.283 6.283 4 C -0.015 4.015 5 H 0.124 0.876 6 C -0.173 4.173 7 C -0.209 4.209 8 H 0.174 0.826 9 C 0.319 3.681 10 O -0.472 6.472 11 N -0.338 5.338 12 C -0.069 4.069 13 C -0.012 4.012 14 C 0.023 3.977 15 N -0.345 5.345 16 C 0.000 4.000 17 C -0.497 4.497 18 H 0.056 0.944 19 C -0.265 4.265 20 N -0.574 5.574 21 Si 0.934 3.066 22 H -0.210 1.210 23 H -0.205 1.205 24 H -0.208 1.208 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.016 0.984 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.706 1.366 -3.029 22.948 hybrid contribution -0.773 0.409 -0.587 1.053 sum -23.479 1.775 -3.616 23.822 Atomic orbital electron populations 1.21759 0.91799 1.03658 1.03102 1.22801 0.96857 0.82354 1.00899 1.87768 1.17894 1.28509 1.94093 1.22524 0.82246 0.94079 1.02685 0.87575 1.23484 1.02880 1.01185 0.89784 1.22695 0.95759 1.05132 0.97360 0.82636 1.20302 0.86110 0.83385 0.78291 1.90705 1.66751 1.27537 1.62176 1.47927 1.21946 1.11001 1.52969 1.22153 0.99150 0.81835 1.03791 1.21924 0.82331 1.01397 0.95572 1.21004 0.85284 0.98356 0.93067 1.44107 1.22006 1.07490 1.60939 1.20874 0.95644 0.88807 0.94692 1.20045 0.92839 0.84986 1.51794 0.94382 1.27103 0.92761 1.06195 1.00435 1.70921 1.36671 1.13468 1.36301 0.82943 0.75201 0.72236 0.76256 1.21040 1.20493 1.20792 0.92058 0.91526 0.89077 0.92203 0.93317 0.84445 0.88363 0.91332 0.88479 0.89568 0.93816 0.89233 0.92517 0.96564 0.98360 0.92485 0.95365 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.80 6.53 71.98 0.47 1.27 16 3 O -0.36 -7.86 10.60 -148.98 -1.58 -9.44 16 4 C 0.04 1.03 5.96 30.60 0.18 1.21 16 5 H 0.11 2.88 7.45 -2.39 -0.02 2.87 16 6 C -0.14 -2.72 10.18 30.60 0.31 -2.41 16 7 C -0.19 -4.36 5.24 -11.54 -0.06 -4.42 16 8 H 0.16 2.70 6.44 -2.39 -0.02 2.68 16 9 C 0.53 17.43 7.46 87.66 0.65 18.08 16 10 O -0.59 -25.82 15.84 -3.03 -0.05 -25.86 16 11 N -0.61 -18.09 2.87 -846.78 -2.43 -20.53 16 12 C 0.07 1.29 10.31 127.77 1.32 2.61 16 13 C 0.11 4.26 5.77 86.38 0.50 4.76 16 14 C 0.15 6.62 6.00 86.38 0.52 7.14 16 15 N -0.62 -32.73 2.80 -726.95 -2.03 -34.76 16 16 C 0.14 6.93 8.99 127.77 1.15 8.08 16 17 C -0.37 -22.08 9.46 84.04 0.80 -21.28 16 18 H 0.04 2.42 7.98 -2.91 -0.02 2.39 16 19 C -0.07 -4.02 4.60 84.86 0.39 -3.63 16 20 N -0.93 -58.32 12.75 21.65 0.28 -58.04 16 21 Si 1.11 53.58 30.01 68.60 2.06 55.64 16 22 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.22 5.99 -2.38 -0.01 1.21 16 34 H 0.09 1.32 7.89 -2.39 -0.02 1.30 16 35 H 0.04 2.00 7.42 -2.39 -0.02 1.98 16 36 H 0.09 2.96 7.89 -2.39 -0.02 2.94 16 37 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16 38 H 0.02 0.80 8.04 -2.39 -0.02 0.78 16 39 H 0.00 -0.08 6.87 -2.39 -0.02 -0.10 16 40 H 0.06 2.20 8.09 -2.38 -0.02 2.18 16 41 H 0.03 1.45 7.28 -2.39 -0.02 1.44 16 42 H 0.26 16.22 6.38 -92.71 -0.59 15.63 16 Total: -1.00 -77.45 347.92 4.36 -73.09 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.16 Total: 9.54 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.97 Total: 10.36 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -4.19 Total: -113.33 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.63 Total: -35.30 kcal Atomic # 14 Polarization: 53.58 SS G_CDS: 2.06 Total: 55.64 kcal Total: -77.45 4.36 -73.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496667692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.932 kcal (2) G-P(sol) polarization free energy of solvation -77.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds