Wall clock time and date at job start Mon Mar 30 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47051 * 2 1 4 4 C 1.46499 * 120.00206 * 263.71569 * 3 2 1 5 5 C 1.52999 * 109.47174 * 270.00271 * 4 3 2 6 6 N 1.46496 * 109.47248 * 179.97438 * 5 4 3 7 7 C 1.36941 * 120.00231 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99718 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99847 * 180.02562 * 7 6 5 10 10 N 1.31611 * 120.00578 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99533 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47275 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47142 * 119.99915 * 11 9 7 14 14 H 1.48501 * 109.47124 * 239.99486 * 11 9 7 15 15 C 1.34778 * 120.00478 * 83.71567 * 3 2 1 16 16 O 1.21273 * 120.00597 * 184.83870 * 15 3 2 17 17 C 1.50703 * 119.99836 * 4.83533 * 15 3 2 18 18 H 1.08999 * 109.57124 * 315.33244 * 17 15 3 19 19 C 1.53170 * 109.52649 * 195.17083 * 17 15 3 20 20 C 1.53174 * 109.04052 * 183.11494 * 19 17 15 21 21 C 1.53088 * 109.16126 * 56.98054 * 20 19 17 22 22 O 1.42904 * 109.41680 * 302.39217 * 21 20 19 23 23 C 1.42897 * 114.09745 * 61.15741 * 22 21 20 24 24 H 1.08990 * 109.47123 * 59.99940 * 1 2 3 25 25 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47031 * 299.99674 * 1 2 3 27 27 H 1.08994 * 109.47060 * 239.99952 * 2 1 3 28 28 H 1.09000 * 109.47261 * 119.99566 * 2 1 3 29 29 H 1.09005 * 109.46608 * 29.99856 * 4 3 2 30 30 H 1.08999 * 109.47423 * 149.99497 * 4 3 2 31 31 H 1.09005 * 109.47015 * 299.99336 * 5 4 3 32 32 H 1.09003 * 109.47148 * 59.99547 * 5 4 3 33 33 H 0.97002 * 120.00407 * 0.02562 * 6 5 4 34 34 H 0.97005 * 120.00778 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.54622 * 302.98567 * 19 17 15 36 36 H 1.09004 * 109.54200 * 63.24884 * 19 17 15 37 37 H 1.09000 * 109.52636 * 176.88562 * 20 19 17 38 38 H 1.09008 * 109.52323 * 297.07709 * 20 19 17 39 39 H 1.08993 * 109.48227 * 62.37872 * 21 20 19 40 40 H 1.09006 * 109.48166 * 182.41509 * 21 20 19 41 41 H 1.08998 * 109.48108 * 178.85956 * 23 22 21 42 42 H 1.08997 * 109.48149 * 58.82949 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3934 2.0256 -1.2611 5 6 3.8758 1.7719 -1.5422 6 7 4.2508 2.4157 -2.8036 7 6 5.5376 2.3243 -3.2630 8 1 6.2759 1.7772 -2.6956 9 6 5.8929 2.9348 -4.4579 10 7 4.9931 3.6012 -5.1496 11 14 7.6481 2.8094 -5.0849 12 1 8.4589 2.0115 -4.1304 13 1 7.6529 2.1467 -6.4139 14 1 8.2280 4.1709 -5.2087 15 6 2.1225 2.0593 1.1601 16 8 2.4425 3.2290 1.1523 17 6 1.8414 1.3638 2.4672 18 1 0.9345 0.7662 2.3751 19 6 1.6567 2.4074 3.5731 20 6 1.4492 1.6880 4.9094 21 6 2.6422 0.7659 5.1742 22 8 2.7761 -0.1597 4.0937 23 6 3.0192 0.4540 2.8264 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7939 1.6126 -2.0724 30 1 2.2158 3.0985 -1.1878 31 1 4.4754 2.1849 -0.7309 32 1 4.0533 0.6989 -1.6155 33 1 3.5878 2.9075 -3.3130 34 1 5.2413 4.0275 -5.9849 35 1 2.5443 3.0372 3.6320 36 1 0.7851 3.0232 3.3513 37 1 1.3721 2.4230 5.7106 38 1 0.5343 1.0969 4.8667 39 1 3.5509 1.3619 5.2570 40 1 2.4798 0.2191 6.1031 41 1 3.1285 -0.3172 2.0639 42 1 3.9329 1.0459 2.8784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497358171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:46 Heat of formation + Delta-G solvation = -77.965311 kcal Electronic energy + Delta-G solvation = -21541.804958 eV Core-core repulsion = 18328.983059 eV Total energy + Delta-G solvation = -3212.821899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60323 -38.74353 -36.25848 -34.66412 -33.77426 -32.07879 -31.27382 -30.30714 -27.64013 -25.32049 -24.79203 -23.68336 -23.11282 -21.62824 -20.51639 -18.95580 -17.27718 -17.04550 -16.67398 -16.39599 -15.78322 -15.26916 -14.88754 -14.42783 -14.15056 -13.91570 -13.84882 -13.55168 -13.23196 -13.11806 -12.95222 -12.87920 -12.43095 -12.14261 -11.69451 -11.40371 -11.29449 -11.27356 -11.05470 -10.96266 -10.86946 -10.66393 -10.58526 -10.06942 -9.91148 -9.75310 -9.50435 -8.87060 -8.52492 -6.92484 -5.75370 -3.04677 2.65649 3.02043 3.44809 3.50328 3.52741 3.60454 4.33089 4.49100 4.61180 4.62396 4.66894 4.78715 4.83222 4.96738 5.08511 5.11392 5.25291 5.39731 5.44366 5.46241 5.53616 5.59795 5.61310 5.65574 5.68024 5.73118 5.82552 5.87504 6.03711 6.05046 6.10137 6.15946 6.56789 6.74247 6.86693 6.91322 7.50475 7.71622 8.27319 8.43097 9.54089 10.10273 10.45274 11.47615 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.003906 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.935592 B = 7167.594099 C = 7538.391253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 N -0.606 5.606 4 C 0.106 3.894 5 C 0.144 3.856 6 N -0.731 5.731 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.518 3.482 16 O -0.530 6.530 17 C -0.144 4.144 18 H 0.102 0.898 19 C -0.105 4.105 20 C -0.155 4.155 21 C 0.056 3.944 22 O -0.377 6.377 23 C 0.070 3.930 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.923 -8.854 19.158 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 N -0.340 5.340 4 C -0.016 4.016 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C 0.305 3.695 16 O -0.406 6.406 17 C -0.165 4.165 18 H 0.120 0.880 19 C -0.143 4.143 20 C -0.193 4.193 21 C -0.021 4.021 22 O -0.295 6.295 23 C -0.007 4.007 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.584 -8.468 19.159 23.469 hybrid contribution 0.657 0.391 -0.738 1.063 sum -9.926 -8.077 18.421 22.430 Atomic orbital electron populations 1.22241 0.95881 1.02315 1.02554 1.21725 0.94422 0.82706 1.03772 1.47962 1.64778 1.14088 1.07144 1.21719 0.97030 0.99232 0.83636 1.20906 0.91816 0.95802 0.89984 1.42222 1.10165 1.63485 1.21656 1.19254 0.87021 1.27545 1.03090 0.91143 1.24746 0.97901 1.00555 0.97764 1.69668 1.32733 1.39369 1.16411 0.86097 0.84274 0.77245 0.78463 1.20543 1.21822 1.21807 1.20364 0.77218 0.86891 0.85020 1.90722 1.46732 1.16104 1.87012 1.22045 1.01899 0.98889 0.93709 0.87981 1.21437 1.03736 0.96720 0.92412 1.22214 0.99579 0.99460 0.97998 1.22643 0.97237 0.92118 0.90061 1.87953 1.92658 1.33041 1.15885 1.22566 0.95453 0.96639 0.86014 0.91951 0.91359 0.92630 0.89430 0.90335 0.90504 0.89681 0.96127 0.96397 0.78258 0.93526 0.90459 0.90983 0.90472 0.91011 0.92894 0.88746 0.87959 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.03 37.16 0.37 -1.11 16 2 C 0.10 0.99 5.75 -4.04 -0.02 0.97 16 3 N -0.61 -8.54 2.49 -173.69 -0.43 -8.97 16 4 C 0.11 1.85 5.53 -4.04 -0.02 1.82 16 5 C 0.14 3.05 6.58 -4.04 -0.03 3.02 16 6 N -0.73 -19.26 5.60 -59.91 -0.34 -19.59 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 C -0.01 -0.41 5.50 -17.44 -0.10 -0.50 16 10 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 11 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 C 0.52 7.74 6.83 -10.98 -0.08 7.67 16 16 O -0.53 -10.21 15.49 5.56 0.09 -10.12 16 17 C -0.14 -1.60 1.88 -91.63 -0.17 -1.77 16 18 H 0.10 0.98 5.94 -51.93 -0.31 0.67 16 19 C -0.11 -1.11 4.78 -26.55 -0.13 -1.24 16 20 C -0.15 -1.23 6.14 -26.60 -0.16 -1.39 16 21 C 0.06 0.47 6.84 37.20 0.25 0.72 16 22 O -0.38 -4.00 10.77 -35.23 -0.38 -4.38 16 23 C 0.07 0.76 5.87 37.21 0.22 0.98 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.48 6.81 -51.93 -0.35 0.12 16 27 H 0.09 0.89 8.02 -51.93 -0.42 0.47 16 28 H 0.08 0.68 4.78 -51.93 -0.25 0.43 16 29 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.08 1.66 7.36 -51.93 -0.38 1.28 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 34 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 0.94 7.84 -51.93 -0.41 0.53 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.01 6.06 -51.93 -0.31 0.69 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 334.11 15.07 5.03 5.03 Total: -1.00 -33.85 334.11 -7.27 -41.12 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.94 Total: 4.99 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.01 Total: 2.13 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.04 Total: -56.59 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.29 Total: -14.50 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.85 -7.27 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497358171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.846 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds